pycom111g03260

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0000317
Physical Location & Seq
Reverse (-)
1982445 .. 1984793
2349 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g03260.1

Sequence Viewer

Length: 633 bp
ATGATCTTCCAAGACTTCTCATTCAAAATTGAAGCAGAAAAATCTACGGCGTTGGTGGGTCAAAGTGGATCAGGTAAATCGACCATCATTGGATTAATCGAGAGATTCTACGATCCAATCAAAGGTTTATTGGAAATGGACGGTCGAGATTTGAGATCATACAACCTTAGGTCATTGAAGAGACAGATTGCATTGGTCAGCCAGGAACCAACGCTATTTGCCGGAACCATAAAAGACAACATTGCATACGGATCTTCCGACGATAAGGTCGACGAGATGGATCGATCGTGGAGGTGGCCAAGGCGGCCAACGCTCACGATTTCATCAGCGGTGCAGCTATCCGGGGGACAAAAGCAATGGATAGCAATAGCCCGAGCAGTACTAAGAAATCCAACGGTATTGCTGTTGGATGAGGCTACCAGCGCGCTCGACTGCCAATCAGAGAAGGTGGTGCAAGAGGCGCTTGAGAGACTGAGGGTGGGGAGGACTAGCGTGGTGGCGGCGCACATATTGAGTACCATACAGAAGTGCGATGCTGAAGGGGTCCCACTCTTCTCTGCTGGCCAAGGGGCCCGCAGGGTCTTATTACTGCTTGGTCAACATCCCCAAGACTGCGGAAGCCTAGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

211

Amino Acids

23.07

Weight (kDa)

7.71

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 4 - 141 2.4e-30 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AccI GTMKAC 1 cut(s) 270
AccII CGCG 1 cut(s) 425
AciI CCGC 5 cut(s) 304, 329, 500, 574, 615
AclWI GGATC 4 cut(s) 76, 107, 259, 288
AcoI YGGCCR 3 cut(s) 296, 305, 562
AcuI CTGAAG 1 cut(s) 558
AfaI GTAC 2 cut(s) 381, 517
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 3 cut(s) 25, 32, 178
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 2 cut(s) 337, 626
AluI AGCT 2 cut(s) 337, 626
Alw26I GTCTC 2 cut(s) 175, 463
AlwI GGATC 4 cut(s) 76, 107, 259, 288
Ama87I CYCGRG 1 cut(s) 372
AoxI GGCC 4 cut(s) 296, 305, 562, 570
ApaI GGGCCC 1 cut(s) 574
ApeKI GCWGC 1 cut(s) 334
AseI ATTAAT 1 cut(s) 95
AspLEI GCGC 4 cut(s) 425, 427, 463, 505
AspS9I GGNCC 3 cut(s) 544, 570, 571
AsuC2I CCSGG 1 cut(s) 343
AvaI CYCGRG 1 cut(s) 372
AvaII GGWCC 1 cut(s) 544
AxyI CCTNAGG 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 574
BalI TGGCCA 2 cut(s) 298, 564
BanII GRGCYC 1 cut(s) 574
BbvI GCAGC 1 cut(s) 346
BccI CCATC 2 cut(s) 92, 271
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 203
BcnI CCSGG 1 cut(s) 343
BcoDI GTCTC 2 cut(s) 175, 463
BfaI CTAG 3 cut(s) 489, 623, 631
BfoI RGCGCY 1 cut(s) 464
BglI GCCNNNNNGGC 1 cut(s) 304
BisI GCNGC 3 cut(s) 305, 335, 501
BlsI GCNGC 3 cut(s) 306, 336, 502
BmcAI AGTACT 1 cut(s) 381
Bme1390I CCNGG 2 cut(s) 203, 343
Bme18I GGWCC 1 cut(s) 544
BmeT110I CYCGRG 1 cut(s) 372
BmgT120I GGNCC 3 cut(s) 544, 570, 571
BmiI GGNNCC 6 cut(s) 207, 226, 545, 546, 571, 572
BmrFI CCNGG 2 cut(s) 203, 343
BmsI GCATC 1 cut(s) 523
BpuEI CTTGAG 1 cut(s) 485
BpuMI CCSGG 1 cut(s) 343
Bsa29I ATCGAT 1 cut(s) 283
BsaJI CCNNGG 3 cut(s) 299, 342, 565
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse21I CCTNAGG 1 cut(s) 167
Bse3DI GCAATG 2 cut(s) 240, 362
BseBI CCWGG 1 cut(s) 203
BseCI ATCGAT 1 cut(s) 283
BseDI CCNNGG 3 cut(s) 299, 342, 565
BseGI GGATG 2 cut(s) 415, 601
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMI GCAATG 2 cut(s) 240, 362
BseMII CTCAG 1 cut(s) 464
BsePI GCGCGC 1 cut(s) 423
BseSI GKGCMC 1 cut(s) 574
BseXI GCAGC 1 cut(s) 346
BsgI GTGCAG 1 cut(s) 353
Bsh1236I CGCG 1 cut(s) 425
Bsh1285I CGRYCG 2 cut(s) 145, 287
BshFI GGCC 4 cut(s) 298, 307, 564, 572
BshVI ATCGAT 1 cut(s) 283
BsiEI CGRYCG 2 cut(s) 145, 287
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 2 cut(s) 222, 342
BslFI GGGAC 2 cut(s) 360, 530
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 2 cut(s) 175, 463
BsmFI GGGAC 2 cut(s) 360, 530
BsnI GGCC 4 cut(s) 298, 307, 564, 572
BsoBI CYCGRG 1 cut(s) 372
Bsp120I GGGCCC 1 cut(s) 570
Bsp1286I GDGCHC 1 cut(s) 574
Bsp143I GATC 7 cut(s) 3, 68, 112, 155, 251, 280, 284
BspACI CCGC 5 cut(s) 304, 329, 500, 574, 615
BspANI GGCC 4 cut(s) 298, 307, 564, 572
BspCNI CTCAG 1 cut(s) 465
BspDI ATCGAT 1 cut(s) 283
BspFNI CGCG 1 cut(s) 425
BspLI GGNNCC 6 cut(s) 207, 226, 545, 546, 571, 572
BspPI GGATC 4 cut(s) 76, 107, 259, 288
BsrDI GCAATG 2 cut(s) 240, 362
BssECI CCNNGG 3 cut(s) 299, 342, 565
BssHII GCGCGC 1 cut(s) 423
BssMI GATC 7 cut(s) 3, 68, 112, 155, 251, 280, 284
BssT1I CCWWGG 2 cut(s) 299, 565
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 143, 397
Bst6I CTCTTC 2 cut(s) 173, 557
BstC8I GCNNGC 3 cut(s) 425, 562, 574
BstDEI CTNAG 3 cut(s) 167, 383, 473
BstF5I GGATG 2 cut(s) 415, 601
BstFNI CGCG 1 cut(s) 425
BstH2I RGCGCY 1 cut(s) 464
BstHHI GCGC 4 cut(s) 425, 427, 463, 505
BstKTI GATC 7 cut(s) 6, 71, 115, 158, 254, 283, 287
BstMAI GTCTC 2 cut(s) 175, 463
BstMBI GATC 7 cut(s) 3, 68, 112, 155, 251, 280, 284
BstMCI CGRYCG 2 cut(s) 145, 287
BstMWI GCNNNNNNNGC 4 cut(s) 304, 310, 422, 460
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 2 cut(s) 201, 341
BstSLI GKGCMC 1 cut(s) 574
BstUI CGCG 1 cut(s) 425
BstV1I GCAGC 1 cut(s) 346
BstX2I RGATCY 1 cut(s) 251
BstYI RGATCY 1 cut(s) 251
Bsu15I ATCGAT 1 cut(s) 283
Bsu36I CCTNAGG 1 cut(s) 167
BsuRI GGCC 4 cut(s) 298, 307, 564, 572
BsuTUI ATCGAT 1 cut(s) 283
BtgZI GCGATG 1 cut(s) 546
BtsCI GGATG 2 cut(s) 415, 601
Cac8I GCNNGC 3 cut(s) 425, 562, 574
CfoI GCGC 4 cut(s) 425, 427, 463, 505
Cfr13I GGNCC 3 cut(s) 544, 570, 571
ClaI ATCGAT 1 cut(s) 283
Csp6I GTAC 2 cut(s) 380, 516
CviQI GTAC 2 cut(s) 380, 516
DdeI CTNAG 3 cut(s) 167, 383, 473
DpnI GATC 7 cut(s) 5, 70, 114, 157, 253, 282, 286
DpnII GATC 7 cut(s) 3, 68, 112, 155, 251, 280, 284
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 3 cut(s) 296, 305, 562
Eam1104I CTCTTC 2 cut(s) 173, 557
EarI CTCTTC 2 cut(s) 173, 557
Eco130I CCWWGG 2 cut(s) 299, 565
Eco24I GRGCYC 1 cut(s) 574
Eco47I GGWCC 1 cut(s) 544
Eco57I CTGAAG 1 cut(s) 558
Eco81I CCTNAGG 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 372
EcoO109I RGGNCCY 2 cut(s) 544, 570
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 2 cut(s) 299, 565
EcoT38I GRGCYC 1 cut(s) 574
ErhI CCWWGG 2 cut(s) 299, 565
FaiI YATR 5 cut(s) 160, 230, 247, 509, 521
FalI AAGNNNNNCTT 2 cut(s) 447, 479
FaqI GGGAC 2 cut(s) 360, 530
FauI CCCGC 1 cut(s) 581
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 3 cut(s) 305, 335, 501
FokI GGATG 2 cut(s) 422, 588
FriOI GRGCYC 1 cut(s) 574
Fsp4HI GCNGC 3 cut(s) 305, 335, 501
FspBI CTAG 3 cut(s) 489, 623, 631
GlaI GCGC 4 cut(s) 424, 426, 462, 504
GluI GCNGC 3 cut(s) 305, 335, 501
HaeII RGCGCY 1 cut(s) 464
HaeIII GGCC 4 cut(s) 298, 307, 564, 572
HapII CCGG 2 cut(s) 222, 342
HhaI GCGC 4 cut(s) 425, 427, 463, 505
Hin6I GCGC 4 cut(s) 423, 425, 461, 503
HinP1I GCGC 4 cut(s) 423, 425, 461, 503
HincII GTYRAC 2 cut(s) 271, 599
HindII GTYRAC 2 cut(s) 271, 599
HinfI GANTC 1 cut(s) 105
HpaII CCGG 2 cut(s) 222, 342
Hpy166II GTNNAC 2 cut(s) 271, 599
Hpy188I TCNGA 2 cut(s) 259, 442
Hpy188III TCNNGA 3 cut(s) 100, 146, 316
Hpy8I GTNNAC 2 cut(s) 271, 599
Hpy99I CGWCG 2 cut(s) 263, 275
HpyAV CCTTC 2 cut(s) 439, 533
HpyCH4III ACNGT 2 cut(s) 143, 397
HpyCH4V TGCA 4 cut(s) 191, 245, 334, 454
HpyF10VI GCNNNNNNNGC 4 cut(s) 304, 310, 422, 460
HpyF3I CTNAG 3 cut(s) 167, 383, 473
HspAI GCGC 4 cut(s) 423, 425, 461, 503
KflI GGGWCCC 1 cut(s) 544
Kzo9I GATC 7 cut(s) 3, 68, 112, 155, 251, 280, 284
LpnPI CCDG 8 cut(s) 57, 188, 215, 235, 355, 433, 546, 562
Lsp1109I GCAGC 1 cut(s) 346
LweI GCATC 1 cut(s) 523
MaeI CTAG 3 cut(s) 489, 623, 631
MalI GATC 7 cut(s) 5, 70, 114, 157, 253, 282, 286
MboI GATC 7 cut(s) 3, 68, 112, 155, 251, 280, 284
MboII GAAGA 3 cut(s) 190, 246, 544
MflI RGATCY 1 cut(s) 251
MhlI GDGCHC 1 cut(s) 574
MlsI TGGCCA 2 cut(s) 298, 564
MluCI AATT 1 cut(s) 27
MluNI TGGCCA 2 cut(s) 298, 564
MmeI TCCRAC 3 cut(s) 282, 387, 416
MnlI CCTC 5 cut(s) 285, 406, 451, 468, 477
Mox20I TGGCCA 2 cut(s) 298, 564
MscI TGGCCA 2 cut(s) 298, 564
MseI TTAA 1 cut(s) 95
Msp20I TGGCCA 2 cut(s) 298, 564
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 2 cut(s) 222, 342
MspR9I CCNGG 2 cut(s) 203, 343
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 425
MwoI GCNNNNNNNGC 4 cut(s) 304, 310, 422, 460
NciI CCSGG 1 cut(s) 343
NdeII GATC 7 cut(s) 3, 68, 112, 155, 251, 280, 284
NlaIV GGNNCC 6 cut(s) 207, 226, 545, 546, 571, 572
PauI GCGCGC 1 cut(s) 423
PcsI WCGNNNNNNNCGW 2 cut(s) 255, 267
PfeI GAWTC 1 cut(s) 105
PkrI GCNGC 3 cut(s) 306, 336, 502
Ple19I CGATCG 1 cut(s) 287
PpuMI RGGWCCY 1 cut(s) 544
PshBI ATTAAT 1 cut(s) 95
Psp5II RGGWCCY 1 cut(s) 544
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 6 cut(s) 207, 226, 545, 546, 571, 572
PspOMI GGGCCC 1 cut(s) 570
PspPI GGNCC 3 cut(s) 544, 570, 571
PspPPI RGGWCCY 1 cut(s) 544
PsuI RGATCY 1 cut(s) 251
PteI GCGCGC 1 cut(s) 423
PvuI CGATCG 1 cut(s) 287
RsaI GTAC 2 cut(s) 381, 517
RsaNI GTAC 2 cut(s) 380, 516
SalI GTCGAC 1 cut(s) 269
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 3 cut(s) 305, 335, 501
Sau3AI GATC 7 cut(s) 3, 68, 112, 155, 251, 280, 284
Sau96I GGNCC 3 cut(s) 544, 570, 571
ScaI AGTACT 1 cut(s) 381
ScrFI CCNGG 2 cut(s) 203, 343
SduI GDGCHC 1 cut(s) 574
SetI ASST 9 cut(s) 76, 127, 168, 173, 270, 296, 339, 450, 628
SfaNI GCATC 1 cut(s) 523
SfiI GGCCNNNNNGGCC 1 cut(s) 304
SinI GGWCC 1 cut(s) 544
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 1 cut(s) 27
SsiI CCGC 5 cut(s) 304, 329, 500, 574, 615
SspMI CTAG 3 cut(s) 489, 623, 631
StyD4I CCNGG 2 cut(s) 201, 341
StyI CCWWGG 2 cut(s) 299, 565
TaaI ACNGT 2 cut(s) 143, 397
TaqI TCGA 6 cut(s) 80, 99, 145, 270, 283, 429
TasI AATT 1 cut(s) 27
TatI WGTACW 1 cut(s) 379
TauI GCSGC 2 cut(s) 307, 503
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TseI GCWGC 1 cut(s) 334
TspDTI ATGAA 1 cut(s) 312
TspGWI ACGGA 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 544
VspI ATTAAT 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 270
XspI CTAG 3 cut(s) 489, 623, 631
ZrmI AGTACT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.