Rh2DG639000

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000317
Physical Location & Seq
Forward (+)
86742579 .. 86747860
5282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG639000.1

Sequence Viewer

Length: 3738 bp
ATGGGGGGAAAAAAGGAAGATAAGAAGAAAGGTTGTACATCTTCTATGCGCTCCGTTTTCATGCATGCCGATGGTGTCGATAAAGTCCTGATGATCTTTGGATTGTTGGGAGCCATCGGCGATGGCTGCTCTACTCCATTTGTCTTGCTAATCACTGGCCGCTTGATGAACAATGTCGGCGGCGCCTCAAGTGACGCTCAAGATGTTTTCTTGCATAACATCAATATGAATGCAGTGGCGCTATTGTACTTGGCTTGCGGATCATGGGTCAGTTGTTTCCTAGAGGGGTATTGTTGGACAAGAACTGGTGAGAGACAAGCAGCTAGAATGAGAGTAACATATTTGAAAGCAGTTCTAAGGCAAGATGTGGGTTACTTTGATCTGCATGTCACAAGCACATCTGAGGTCATCACCAGCATCTCTAGTGATAGCCTCGTGATTCAAGACTTCCTCAGTGAAAAGGTGCCAAACTTTATAATGAACTGCTCTTTGTTCTTTGGGAGCTATGTGGCGGCATTCATAATGCTGTGGAGGCTAGCCATCGTTGCATTTCCGTTTGTGGTACTTCTGGTAATTCCGGGATTGATTTACGGAAGGATTTTGATGGGACTGGCTAGGCAGATTAGAGATGAATACAACAAGACTGGAACAATAGCAGAACAGGCCCTGTCATCAATCAGAACCGTTTACGCGTTTGTTGGGGAAACGAAAACAATTTCGGAGTTCTCTGCAGCTCTACAAGGCTCAGTGAAGTTGGGATTGAGTCAAGGCCTGGCAAAAGGCTTGGCCATTGGTAGCAGCGGCATCGCTTTTGCTATTTGGTCTTTCATGTCCTACTATGGCAGCAGAATGGTCATGTATCATGGCGCACTTGGAGGCACTGTTGTATCAGCTGGTACTGGAATAATCCTTGGTGGATTGGCATTCGGAAGAGGGCTATCAAACCTGAAGTACTTCTCGGAAGCGTGCTCAGCATCAGAGCGAATAATGGAGGTGATACGGAGAGTCCCCAAGATCGACTCAGACAACATGGAAGGTGAAATGCTAGAGAACGTTTACGGAGAAGTCGAATTCAAGCACGTTGACTTCGCTTACCCTTCAAGGCCAGAAAGCATCATCTGCAACAACTTTAACTTGACGGTTCCAGCTGGGAAAACTGTGGCATTGGTGGGTGGGAGTGGCTCGGGAAAGTCGACAGTGATTTCTTTGCTGCAGAGATTTTATGATCCACTTGGAGGTGAGATACTCATTGATGGGGTGGCCATAAAAAATTGTCAGCTCAAGTGGCTTAGGTCCCAGATGGGGCAGGTGAGCCAAGAGCCTGCTCTTTTTGCAACCAGCATAAAAGAGAACATACTGTTTGGGAAAGAAGATGCTGACATTGAAGAGGTTATAGAGGCTGGTAAAGCTTCTAATGCTCACAATTTCATCTCTCAGTTGCCTCTGGGATATGACACACAGGTTGGTGAGAGAGGTATTCAGATTTCGGGAGGACAGAAGCAAAGAATAGCCATTGCACGAGCAATCATCAAGAAACCACGAATACTCCTTCTAGATGAAGCCACCAGCGCGTTAGACTCCGAATCGGAGCGTGTAGTCCAAGAAGCTCTGGACAAAGCAGCGGTGGGACGTACGACCATCATCATCGCCCACCGCCTCTCCACCATCCGAAACGCCGACGTCATTGTTGTCGTTCAAAACGGGCAGGTCATGGAGACAGGCTCACACGACGAACTATTCCAACGTGAAAATGGCCTCTACACTTCGCTTGTCCGTTTACAACAAACAGATCAAGCACATTGTGCATCATCCTCTATTTCAAACATGGACATTCATGACACGAGCAGTCGTCGGCTTTCGATGGTTAGCCGTTCGAGTTCTGCCAACTCATTTGAGGGTCGAGCTTCGTCGGTTCATGGTGGGGAAGATGAGACCGTAGAAGTTAAGAAGCTGCCTGTCCCGTCTTTTCAAAGATTGATGGCTTTGAACCTTCCGGAGTGGAAACAAGCGCTTTTGGGGTGCTTCGGTGCGATATTGTTCGGTGCAGTTCAGCCGCTGTTTGCATTCACTCTGGGGTCGACGGTGTCAGTTTACTTCTTGGTGGAGCACGATGAGATCAAGGAGAAGACAAGAATCTATTCTCTGTGTTTTGTTGGGTTGGCTATTCTCTCCTTTCTAGTTAACCTTTGCCAGCATTACAACTTTGCCTACATGGGAGAGTACTTGACTAAGAGAATTAGAGAGAAGATGCTTTCAAAGATACTTACATTTGAAGCTGGGTGGTTTGATCAGGATGAGAATTCCAGTGGTGCCATATGCTCTAGACTCGCCAAAGATGCCAATGTGGTGAGATCTTTAGTGGGTGATCGGCTTTCTCTACTTGTACAAACCTTCTCAGCTGTGACAGTAGCAGGCACAATGGGTTTGGTCATTGCATGGAGGCTGGCCTCAGTTATGATAGCACTGCAACCCATCACTATTCTGTGCTACTACACCAGGAGTATCCTTCTCCAAAGCATGTCAAGCAAAGCCACCAAAGCTCAAGATGAAAGTAGCAAGCTAGCTGCAGAGGCAGTCTCCAACCTCAGAACCATCACTGCTTTCTCGTCTCAAGACCGCCTGTTGAAAATGCTCGAAAAGGCCCAAGAAGGCCCGCGTAAGGAGAGCATTCGACAATCATGGTTTGCGGGTATTGCTCTTGGTTGTTCTCAAGGTCTTAACACTATCACCTGGGCTTTTGACTTTTGGTACGGAGGCAAGCTCGTCGCCAAGGGCTACATAACTGCGAAAGCACTGTTTCGGACGTACATGATATTGCTGAGCACGGGTCGGGTCATTGCGGAAGCCGGAAGTATGACTTCGGACCTTGTGAAAGGCTCGGACGCTGTTGCGTCCGTATTTGCCGTGTTGGACCGGTACACAAATATAGAACCAGAAGACCCGGAAGGTTGCAAACCCAAAAGTATAACGGGTCATATAGAACTTCATGACATACATTTTGCGTACCCCACTAGGCCCGATGTGATGATCTTGAAGGGATTCTCAATAAATATCGAAGCGAGAAAATCAACAGCTTTGGTGGGAAAAAGTGGGTCCGGAAAATCAACAATCATCGGATTAATTGAGAGATTTTACGATCCACTCAAAGGAGAAGTAAGAATCGATGGTCGAGATATAAAGTCGTACCATCTCAGGATGTTAAGGAAACACATAGCCTTGGTTAGCCAAGAGCCAACATTATTTTCAGGCACCATAAGAGAAAACATCATATACGGCATGTCAGATAAGATTGACGAATTGGAGATAATCGAAGCAGCTAAGGCAGCCAATGCTCATGATTTCATCTCGGGACTCAAGGAGGGATACAACACCTCATGTGGTAACAGAGGAGTACAACTGTCTGGGGGACAGAAGCAACGCATTGCTATAGCCAGAGCTATATTGAGGAACCCGGTGGTGTTACTATTAGATGAGGCGACCAGCTCTCTTGATAGTCAATCAGAGAAGGTGGTGCAAGATGCGCTAGAGCGCGTGATGGTGGGGAGGACTAGTGTGGTGGTGGCACACAGGTTAAGTACCATACAACACTGTGATCTTATCACTGTCCTTGATAAAGGGAGGGTAGTCGAGAAAGGGAGTCACCCGTCTCTTTTGGCCAAAGGGCCTAAGGGTTCTTACTACTCATTGGTTAGCCTGCAGAGGACACCATCTGTATCAGAGCTTACCAAATTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1245

Amino Acids

135.94

Weight (kDa)

8.53

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 31 - 290 6.2e-44 ABC transporter transmembrane region
ABC_tran PF00005 375 - 523 6e-33 ABC transporter
ABC_membrane PF00664 671 - 941 4.6e-50 ABC transporter transmembrane region
ABC_tran PF00005 1011 - 1161 5e-32 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 476
AarI CACCTGC 1 cut(s) 1297
AatII GACGTC 1 cut(s) 1683
Acc36I ACCTGC 2 cut(s) 1297, 1696
AccB1I GGYRCC 4 cut(s) 182, 463, 2309, 3248
AccI GTMKAC 2 cut(s) 1193, 2078
AccII CGCG 4 cut(s) 692, 1571, 2656, 3531
AccIII TCCGGA 2 cut(s) 1993, 3095
AclI AACGTT 1 cut(s) 1053
AclWI GGATC 3 cut(s) 268, 1220, 3131
AcoI YGGCCR 4 cut(s) 157, 786, 1260, 3654
AcsI RAATTY 2 cut(s) 1070, 2299
AcuI CTGAAG 1 cut(s) 968
AcyI GRCGYC 2 cut(s) 183, 1680
AdeI CACNNNGTG 1 cut(s) 1802
AfeI AGCGCT 1 cut(s) 2010
AfiI CCNNNNNNNGG 4 cut(s) 1235, 1302, 2659, 3146
AflIII ACRYGT 1 cut(s) 690
AgeI ACCGGT 1 cut(s) 2913
AhlI ACTAGT 1 cut(s) 3548
AjnI CCWGG 3 cut(s) 771, 2495, 2729
AjuI GAANNNNNNNTTGG 2 cut(s) 3226, 3258
Alw21I GWGCWC 3 cut(s) 971, 2109, 2825
Alw26I GTCTC 6 cut(s) 307, 1709, 1925, 2581, 2613, 3651
AlwI GGATC 3 cut(s) 268, 1220, 3131
AlwNI CAGNNNCTG 2 cut(s) 667, 2056
Ama87I CYCGRG 2 cut(s) 1183, 3346
Aor13HI TCCGGA 2 cut(s) 1993, 3095
Aor51HI AGCGCT 1 cut(s) 2010
ApoI RAATTY 2 cut(s) 1070, 2299
ArsI GACNNNNNNTTYG 2 cut(s) 2981, 3013
AseI ATTAAT 1 cut(s) 3119
AsiGI ACCGGT 1 cut(s) 2913
Asp700I GAANNNNTTC 3 cut(s) 953, 2137, 3038
AspLEI GCGC 8 cut(s) 51, 185, 241, 869, 1571, 2011, 3523, 3531
AspS9I GGNCC 9 cut(s) 664, 1293, 2641, 2651, 2863, 2911, 3015, 3093, 3662
AsuC2I CCSGG 3 cut(s) 579, 2942, 3452
AsuNHI GCTAGC 2 cut(s) 535, 2560
AvaI CYCGRG 2 cut(s) 1183, 3346
AvaII GGWCC 4 cut(s) 1293, 2863, 2911, 3093
AxyI CCTNAGG 1 cut(s) 3666
BaeI ACNNNNGTAYC 2 cut(s) 870, 903
BalI TGGCCA 3 cut(s) 788, 1262, 3656
BanI GGYRCC 4 cut(s) 182, 463, 2309, 3248
BauI CACGAG 3 cut(s) 434, 1518, 1840
BbsI GAAGAC 2 cut(s) 2132, 2943
Bbv12I GWGCWC 3 cut(s) 971, 2109, 2825
BceAI ACGGC 3 cut(s) 1854, 2888, 3289
BcgI CGANNNNNNTGC 4 cut(s) 787, 821, 2746, 2780
BciT130I CCWGG 3 cut(s) 773, 2497, 2731
BciVI GTATCC 2 cut(s) 2513, 3356
BclI TGATCA 1 cut(s) 2287
BcnI CCSGG 3 cut(s) 579, 2942, 3452
BcoDI GTCTC 6 cut(s) 307, 1709, 1925, 2581, 2613, 3651
BcuI ACTAGT 1 cut(s) 3548
BfmI CTRYAG 5 cut(s) 729, 1211, 2565, 3426, 3695
BfoI RGCGCY 3 cut(s) 186, 242, 2012
BfuAI ACCTGC 2 cut(s) 1297, 1696
BfuI GTATCC 2 cut(s) 2513, 3356
BglII AGATCT 1 cut(s) 2351
BlpI GCTNAGC 2 cut(s) 970, 2819
BmcAI AGTACT 2 cut(s) 953, 2222
Bme1390I CCNGG 6 cut(s) 579, 773, 2497, 2731, 2942, 3452
Bme18I GGWCC 4 cut(s) 1293, 2863, 2911, 3093
BmeT110I CYCGRG 2 cut(s) 1183, 3346
BmgT120I GGNCC 9 cut(s) 664, 1293, 2641, 2651, 2863, 2911, 3015, 3093, 3662
BmiI GGNNCC 9 cut(s) 112, 184, 465, 1143, 1295, 2311, 3094, 3250, 3449
BmrFI CCNGG 6 cut(s) 579, 773, 2497, 2731, 2942, 3452
BmsI GCATC 9 cut(s) 426, 813, 983, 1122, 1363, 1814, 2238, 2326, 3508
BmtI GCTAGC 2 cut(s) 539, 2564
BpiI GAAGAC 2 cut(s) 2132, 2943
BplI GAGNNNNNCTC 6 cut(s) 1706, 1738, 2561, 2593, 2745, 2777
Bpu10I CCTNAGC 2 cut(s) 1289, 3318
Bpu1102I GCTNAGC 2 cut(s) 970, 2819
BpuEI CTTGAG 7 cut(s) 172, 183, 1265, 2526, 2595, 2694, 3338
BpuMI CCSGG 3 cut(s) 579, 2942, 3452
Bsa29I ATCGAT 1 cut(s) 3162
BsaHI GRCGYC 2 cut(s) 183, 1680
BsaI GGTCTC 1 cut(s) 1925
BsaJI CCNNGG 4 cut(s) 910, 2730, 2769, 3216
BsaWI WCCGGW 3 cut(s) 1993, 2913, 3095
BsaXI ACNNNNNCTCC 8 cut(s) 867, 897, 1530, 1560, 1643, 1673, 3535, 3565
Bsc4I CCNNNNNNNGG 4 cut(s) 1235, 1302, 2659, 3146
Bse118I RCCGGY 1 cut(s) 2913
Bse1I ACTGG 6 cut(s) 160, 310, 615, 649, 904, 2304
Bse21I CCTNAGG 1 cut(s) 3666
Bse3DI GCAATG 4 cut(s) 1512, 2430, 2835, 3420
BseAI TCCGGA 2 cut(s) 1993, 3095
BseBI CCWGG 3 cut(s) 773, 2497, 2731
BseCI ATCGAT 1 cut(s) 3162
BseDI CCNNGG 4 cut(s) 910, 2730, 2769, 3216
BseGI GGATG 4 cut(s) 1665, 1808, 2299, 3201
BseLI CCNNNNNNNGG 4 cut(s) 1235, 1302, 2659, 3146
BseMI GCAATG 4 cut(s) 1512, 2430, 2835, 3420
BseNI ACTGG 6 cut(s) 160, 310, 615, 649, 904, 2304
BseRI GAGGAG 1 cut(s) 3402
BseYI CCCAGC 2 cut(s) 1148, 2276
BsgI GTGCAG 1 cut(s) 2064
Bsh1236I CGCG 4 cut(s) 692, 1571, 2656, 3531
BshNI GGYRCC 4 cut(s) 182, 463, 2309, 3248
BshTI ACCGGT 1 cut(s) 2913
BshVI ATCGAT 1 cut(s) 3162
BsiHKAI GWGCWC 3 cut(s) 971, 2109, 2825
BsiHKCI CYCGRG 2 cut(s) 1183, 3346
BsiSI CCGG 7 cut(s) 578, 1994, 2847, 2914, 2942, 3096, 3452
BsiWI CGTACG 1 cut(s) 1631
BslFI GGGAC 7 cut(s) 621, 992, 1279, 1641, 1943, 3363, 3420
BslI CCNNNNNNNGG 4 cut(s) 1235, 1302, 2659, 3146
BsmAI GTCTC 6 cut(s) 307, 1709, 1925, 2581, 2613, 3651
BsmBI CGTCTC 2 cut(s) 2613, 3651
BsmFI GGGAC 7 cut(s) 621, 992, 1279, 1641, 1943, 3363, 3420
BsmI GAATGC 5 cut(s) 235, 515, 923, 2063, 2667
Bso31I GGTCTC 1 cut(s) 1925
BsoBI CYCGRG 2 cut(s) 1183, 3346
Bsp1286I GDGCHC 3 cut(s) 971, 2109, 2825
Bsp13I TCCGGA 2 cut(s) 1993, 3095
Bsp1407I TGTACA 2 cut(s) 35, 2383
Bsp1720I GCTNAGC 2 cut(s) 970, 2819
BspDI ATCGAT 1 cut(s) 3162
BspEI TCCGGA 2 cut(s) 1993, 3095
BspFNI CGCG 4 cut(s) 692, 1571, 2656, 3531
BspHI TCATGA 3 cut(s) 1834, 2986, 3334
BspLI GGNNCC 9 cut(s) 112, 184, 465, 1143, 1295, 2311, 3094, 3250, 3449
BspMAI CTGCAG 4 cut(s) 733, 1215, 2569, 3699
BspMI ACCTGC 2 cut(s) 1297, 1696
BspOI GCTAGC 2 cut(s) 539, 2564
BspPI GGATC 3 cut(s) 268, 1220, 3131
BspT107I GGYRCC 4 cut(s) 182, 463, 2309, 3248
BspTNI GGTCTC 1 cut(s) 1925
BsrDI GCAATG 4 cut(s) 1512, 2430, 2835, 3420
BsrFI RCCGGY 1 cut(s) 2913
BsrGI TGTACA 2 cut(s) 35, 2383
BsrI ACTGG 6 cut(s) 160, 310, 615, 649, 904, 2304
BssAI RCCGGY 1 cut(s) 2913
BssECI CCNNGG 4 cut(s) 910, 2730, 2769, 3216
BssNI GRCGYC 2 cut(s) 183, 1680
BssSI CACGAG 3 cut(s) 434, 1518, 1840
BssT1I CCWWGG 3 cut(s) 910, 2769, 3216
Bst2BI CACGAG 3 cut(s) 434, 1518, 1840
Bst2UI CCWGG 3 cut(s) 773, 2497, 2731
Bst6I CTCTTC 2 cut(s) 925, 1380
BstACI GRCGYC 2 cut(s) 183, 1680
BstAPI GCANNNNNTGC 3 cut(s) 1119, 1802, 3329
BstAUI TGTACA 2 cut(s) 35, 2383
BstF5I GGATG 4 cut(s) 1665, 1808, 2299, 3201
BstFNI CGCG 4 cut(s) 692, 1571, 2656, 3531
BstH2I RGCGCY 3 cut(s) 186, 242, 2012
BstHHI GCGC 8 cut(s) 51, 185, 241, 869, 1571, 2011, 3523, 3531
BstMAI GTCTC 6 cut(s) 307, 1709, 1925, 2581, 2613, 3651
BstNI CCWGG 3 cut(s) 773, 2497, 2731
BstNSI RCATGY 4 cut(s) 68, 389, 2521, 3280
BstSCI CCNGG 6 cut(s) 577, 771, 2495, 2729, 2940, 3450
BstSFI CTRYAG 5 cut(s) 729, 1211, 2565, 3426, 3695
BstUI CGCG 4 cut(s) 692, 1571, 2656, 3531
BstV2I GAAGAC 2 cut(s) 2132, 2943
BstX2I RGATCY 1 cut(s) 2351
BstYI RGATCY 1 cut(s) 2351
Bsu15I ATCGAT 1 cut(s) 3162
Bsu36I CCTNAGG 1 cut(s) 3666
BsuI GTATCC 2 cut(s) 2513, 3356
BsuTUI ATCGAT 1 cut(s) 3162
BtgZI GCGATG 3 cut(s) 135, 790, 1630
BtsCI GGATG 4 cut(s) 1665, 1808, 2299, 3201
BtsI GCAGTG 3 cut(s) 240, 2462, 2595
BveI ACCTGC 2 cut(s) 1297, 1696
CaiI CAGNNNCTG 2 cut(s) 667, 2056
CciI TCATGA 3 cut(s) 1834, 2986, 3334
CfoI GCGC 8 cut(s) 51, 185, 241, 869, 1571, 2011, 3523, 3531
Cfr10I RCCGGY 1 cut(s) 2913
Cfr13I GGNCC 9 cut(s) 664, 1293, 2641, 2651, 2863, 2911, 3015, 3093, 3662
ClaI ATCGAT 1 cut(s) 3162
CseI GACGC 3 cut(s) 203, 2880, 2891
CspAI ACCGGT 1 cut(s) 2913
DinI GGCGCC 1 cut(s) 184
DraIII CACNNNGTG 1 cut(s) 1802
EaeI YGGCCR 4 cut(s) 157, 786, 1260, 3654
Eam1104I CTCTTC 2 cut(s) 925, 1380
EarI CTCTTC 2 cut(s) 925, 1380
Eco130I CCWWGG 3 cut(s) 910, 2769, 3216
Eco147I AGGCCT 1 cut(s) 771
Eco31I GGTCTC 1 cut(s) 1925
Eco47I GGWCC 4 cut(s) 1293, 2863, 2911, 3093
Eco47III AGCGCT 1 cut(s) 2010
Eco57I CTGAAG 1 cut(s) 968
Eco81I CCTNAGG 1 cut(s) 3666
Eco88I CYCGRG 2 cut(s) 1183, 3346
EcoO109I RGGNCCY 3 cut(s) 664, 1293, 3662
EcoRI GAATTC 2 cut(s) 1070, 2299
EcoRII CCWGG 3 cut(s) 771, 2495, 2729
EcoT14I CCWWGG 3 cut(s) 910, 2769, 3216
EcoT22I ATGCAT 1 cut(s) 66
EgeI GGCGCC 1 cut(s) 184
EheI GGCGCC 1 cut(s) 184
ErhI CCWWGG 3 cut(s) 910, 2769, 3216
Esp3I CGTCTC 2 cut(s) 2613, 3651
FalI AAGNNNNNCTT 2 cut(s) 2842, 2874
FaqI GGGAC 7 cut(s) 621, 992, 1279, 1641, 1943, 3363, 3420
FauI CCCGC 2 cut(s) 2661, 2680
FauNDI CATATG 1 cut(s) 2315
FbaI TGATCA 1 cut(s) 2287
FblI GTMKAC 2 cut(s) 1193, 2078
FokI GGATG 4 cut(s) 1652, 1795, 2306, 3208
GlaI GCGC 8 cut(s) 50, 184, 240, 868, 1570, 2010, 3522, 3530
GsaI CCCAGC 2 cut(s) 1152, 2280
HaeII RGCGCY 3 cut(s) 186, 242, 2012
HapII CCGG 7 cut(s) 578, 1994, 2847, 2914, 2942, 3096, 3452
HgaI GACGC 3 cut(s) 203, 2880, 2891
HhaI GCGC 8 cut(s) 51, 185, 241, 869, 1571, 2011, 3523, 3531
Hin1I GRCGYC 2 cut(s) 183, 1680
Hin6I GCGC 8 cut(s) 49, 183, 239, 867, 1569, 2009, 3521, 3529
HinP1I GCGC 8 cut(s) 49, 183, 239, 867, 1569, 2009, 3521, 3529
HincII GTYRAC 4 cut(s) 1084, 1194, 2079, 2182
HindII GTYRAC 4 cut(s) 1084, 1194, 2079, 2182
HindIII AAGCTT 1 cut(s) 1407
HpaI GTTAAC 1 cut(s) 2182
HpaII CCGG 7 cut(s) 578, 1994, 2847, 2914, 2942, 3096, 3452
Hpy166II GTNNAC 9 cut(s) 688, 1057, 1084, 1194, 1778, 2079, 2092, 2182, 2919
Hpy8I GTNNAC 9 cut(s) 688, 1057, 1084, 1194, 1778, 2079, 2092, 2182, 2919
Hpy99I CGWCG 6 cut(s) 1682, 1733, 1854, 1912, 2083, 2768
HpyCH4IV ACGT 6 cut(s) 1053, 1080, 1630, 1680, 1744, 2804
HpySE526I ACGT 6 cut(s) 1053, 1080, 1630, 1680, 1744, 2804
Hsp92I GRCGYC 2 cut(s) 183, 1680
HspAI GCGC 8 cut(s) 49, 183, 239, 867, 1569, 2009, 3521, 3529
KasI GGCGCC 1 cut(s) 182
Kpn2I TCCGGA 2 cut(s) 1993, 3095
Ksp22I TGATCA 1 cut(s) 2287
KspAI GTTAAC 1 cut(s) 2182
LmnI GCTCC 5 cut(s) 56, 110, 501, 1588, 2104
LweI GCATC 9 cut(s) 426, 813, 983, 1122, 1363, 1814, 2238, 2326, 3508
MaeII ACGT 6 cut(s) 1053, 1080, 1630, 1680, 1744, 2804
MaeIII GTNAC 8 cut(s) 191, 334, 371, 388, 2401, 3380, 3459, 3638
MflI RGATCY 1 cut(s) 2351
MhlI GDGCHC 3 cut(s) 971, 2109, 2825
MlsI TGGCCA 3 cut(s) 788, 1262, 3656
MluI ACGCGT 1 cut(s) 690
MluNI TGGCCA 3 cut(s) 788, 1262, 3656
Mly113I GGCGCC 1 cut(s) 183
MlyI GAGTC 7 cut(s) 772, 1013, 1014, 1571, 2319, 3345, 3646
MmeI TCCRAC 4 cut(s) 275, 1765, 2604, 2889
Mox20I TGGCCA 3 cut(s) 788, 1262, 3656
Mph1103I ATGCAT 1 cut(s) 66
MroI TCCGGA 2 cut(s) 1993, 3095
MroXI GAANNNNTTC 3 cut(s) 953, 2137, 3038
MscI TGGCCA 3 cut(s) 788, 1262, 3656
MseI TTAA 7 cut(s) 1131, 1944, 2181, 2718, 3119, 3200, 3572
MslI CAYNNNNRTG 2 cut(s) 69, 224
Msp20I TGGCCA 3 cut(s) 788, 1262, 3656
MspA1I CMGCKG 6 cut(s) 801, 893, 1148, 1622, 2056, 2399
MspI CCGG 7 cut(s) 578, 1994, 2847, 2914, 2942, 3096, 3452
MspR9I CCNGG 6 cut(s) 579, 773, 2497, 2731, 2942, 3452
Mva1269I GAATGC 5 cut(s) 235, 515, 923, 2063, 2667
MvaI CCWGG 3 cut(s) 773, 2497, 2731
MvnI CGCG 4 cut(s) 692, 1571, 2656, 3531
NarI GGCGCC 1 cut(s) 183
NciI CCSGG 3 cut(s) 579, 2942, 3452
NdeI CATATG 1 cut(s) 2315
NheI GCTAGC 2 cut(s) 535, 2560
NlaIV GGNNCC 9 cut(s) 112, 184, 465, 1143, 1295, 2311, 3094, 3250, 3449
NmuCI GTSAC 4 cut(s) 191, 388, 2401, 3638
NsiI ATGCAT 1 cut(s) 66
NspI RCATGY 4 cut(s) 68, 389, 2521, 3280
PaeI GCATGC 1 cut(s) 68
PagI TCATGA 3 cut(s) 1834, 2986, 3334
PaqCI CACCTGC 1 cut(s) 1297
PceI AGGCCT 1 cut(s) 771
PcsI WCGNNNNNNNCGW 2 cut(s) 1065, 1190
PctI GAATGC 5 cut(s) 235, 515, 923, 2063, 2667
PdmI GAANNNNTTC 3 cut(s) 953, 2137, 3038
PfeI GAWTC 5 cut(s) 439, 1583, 2133, 3039, 3159
Pfl23II CGTACG 1 cut(s) 1631
PflFI GACNNNGTC 1 cut(s) 2083
PfoI TCCNGGA 1 cut(s) 577
PinAI ACCGGT 1 cut(s) 2913
PleI GAGTC 7 cut(s) 771, 1013, 1013, 1571, 2319, 3345, 3645
PluTI GGCGCC 1 cut(s) 186
PpsI GAGTC 7 cut(s) 771, 1013, 1013, 1571, 2319, 3345, 3645
PpuMI RGGWCCY 1 cut(s) 1293
PshBI ATTAAT 1 cut(s) 3119
PsiI TTATAA 1 cut(s) 476
Psp1406I AACGTT 1 cut(s) 1053
Psp5II RGGWCCY 1 cut(s) 1293
Psp6I CCWGG 3 cut(s) 771, 2495, 2729
PspFI CCCAGC 2 cut(s) 1148, 2276
PspGI CCWGG 3 cut(s) 771, 2495, 2729
PspLI CGTACG 1 cut(s) 1631
PspN4I GGNNCC 9 cut(s) 112, 184, 465, 1143, 1295, 2311, 3094, 3250, 3449
PspPI GGNCC 9 cut(s) 664, 1293, 2641, 2651, 2863, 2911, 3015, 3093, 3662
PspPPI RGGWCCY 1 cut(s) 1293
PstI CTGCAG 4 cut(s) 733, 1215, 2569, 3699
PstNI CAGNNNCTG 2 cut(s) 667, 2056
PsuI RGATCY 1 cut(s) 2351
PsyI GACNNNGTC 1 cut(s) 2083
PvuII CAGCTG 3 cut(s) 893, 1148, 2399
RseI CAYNNNNRTG 2 cut(s) 69, 224
SalI GTCGAC 2 cut(s) 1192, 2077
SaqAI TTAA 7 cut(s) 1131, 1944, 2181, 2718, 3119, 3200, 3572
Sau96I GGNCC 9 cut(s) 664, 1293, 2641, 2651, 2863, 2911, 3015, 3093, 3662
ScaI AGTACT 2 cut(s) 953, 2222
SchI GAGTC 7 cut(s) 772, 1013, 1014, 1571, 2319, 3345, 3646
ScrFI CCNGG 6 cut(s) 579, 773, 2497, 2731, 2942, 3452
SduI GDGCHC 3 cut(s) 971, 2109, 2825
SfaNI GCATC 9 cut(s) 426, 813, 983, 1122, 1363, 1814, 2238, 2326, 3508
SfcI CTRYAG 5 cut(s) 729, 1211, 2565, 3426, 3695
SfoI GGCGCC 1 cut(s) 184
SinI GGWCC 4 cut(s) 1293, 2863, 2911, 3093
SmiMI CAYNNNNRTG 2 cut(s) 69, 224
SmlI CTYRAG 7 cut(s) 187, 198, 1280, 2541, 2610, 2709, 3353
SmoI CTYRAG 7 cut(s) 187, 198, 1280, 2541, 2610, 2709, 3353
SpeI ACTAGT 1 cut(s) 3548
SphI GCATGC 1 cut(s) 68
SseBI AGGCCT 1 cut(s) 771
SspDI GGCGCC 1 cut(s) 182
StuI AGGCCT 1 cut(s) 771
StyD4I CCNGG 6 cut(s) 577, 771, 2495, 2729, 2940, 3450
StyI CCWWGG 3 cut(s) 910, 2769, 3216
TaiI ACGT 6 cut(s) 1056, 1083, 1633, 1683, 1747, 2807
TatI WGTACW 6 cut(s) 35, 246, 951, 2220, 2383, 3391
TauI GCSGC 5 cut(s) 162, 183, 515, 804, 2056
TfiI GAWTC 5 cut(s) 439, 1583, 2133, 3039, 3159
Tru1I TTAA 7 cut(s) 1131, 1944, 2181, 2718, 3119, 3200, 3572
Tru9I TTAA 7 cut(s) 1131, 1944, 2181, 2718, 3119, 3200, 3572
TseFI GTSAC 4 cut(s) 191, 388, 2401, 3638
Tsp45I GTSAC 4 cut(s) 191, 388, 2401, 3638
TspGWI ACGGA 8 cut(s) 43, 543, 606, 1015, 1074, 1763, 2766, 2884
Tth111I GACNNNGTC 1 cut(s) 2083
VpaK11BI GGWCC 4 cut(s) 1293, 2863, 2911, 3093
VspI ATTAAT 1 cut(s) 3119
XapI RAATTY 2 cut(s) 1070, 2299
XbaI TCTAGA 2 cut(s) 1552, 2321
XceI RCATGY 4 cut(s) 68, 389, 2521, 3280
XcmI CCANNNNNNNNNTGG 1 cut(s) 1748
XmiI GTMKAC 2 cut(s) 1193, 2078
XmnI GAANNNNTTC 3 cut(s) 953, 2137, 3038
ZraI GACGTC 1 cut(s) 1681
ZrmI AGTACT 2 cut(s) 953, 2222
Zsp2I ATGCAT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.