Rh2AG615800

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000317
Physical Location & Seq
Forward (+)
84060979 .. 84062339
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG615800.1

Sequence Viewer

Length: 687 bp
ATGGAAGACAAAATGGAGAGCAAGAAGAAAGCTGGCTCTTCTATACGCTCCGTTTTCATGCACGCTGATGGTGTTGATAAACTCTTGATGGCGTTGGGGCTGTTCGGAAGCATCGGAGACTGCTGCACAACGCCTCTGGTCTTGTTGATCACTAGCCGCTTGATGAACAATGTCGGCGGCGCCTCATCCAACGCTCAAGATGCTTTCTTGCATAACATCAATAAGGTGCCAAACTTTGTAATGAACTGCTCTATGTTCCTTGGGAGCTATGTTGCGGCGTTCATAATGCTGTGGAGGCTAGCCATCGTTGGGTTTCCGTTTGTGGTGCTTCTGGTGATTCCGGGTTTGATATACGGACGGACTTTGATGGGACTGGCTAGGCAGATTAGAGATGAATACACCAAGGCTGGCACAATAGCAGAACAGGCACTGTCATCAATTAGAACCGTGTATGCATTTGTTGGAGAAAAGAAGACTATAACAGAGTTCTCTGCAGCTCTACAAGGCTCAGTGAAGTTGGGGTTGAGTCAGGGCCTAGCAAAAGGCTTGGCCATTGGAAGCAACGGTGTCGTTTTCGCGATTTGGTCGTTCATGTCCTACTATGGCAGCAGAATGGTCATGTACCATGGCGCTAAGGGAGGCACTGTTTTCGCTGTTGGTGCTGCAATAGCTGTTGGTGGATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

228

Amino Acids

24.24

Weight (kDa)

9.51

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 76 - 219 1.4e-20 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 179, 226
AccII CGCG 1 cut(s) 578
AciI CCGC 3 cut(s) 157, 177, 275
AcoI YGGCCR 1 cut(s) 549
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 1 cut(s) 623
AfiI CCNNNNNNNGG 1 cut(s) 309
AluBI AGCT 4 cut(s) 32, 267, 497, 671
AluI AGCT 4 cut(s) 32, 267, 497, 671
Alw26I GTCTC 1 cut(s) 111
AlwNI CAGNNNCTG 1 cut(s) 430
AoxI GGCC 2 cut(s) 532, 549
ApeKI GCWGC 4 cut(s) 123, 494, 606, 662
AspLEI GCGC 2 cut(s) 182, 632
AspS9I GGNCC 1 cut(s) 532
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 1 cut(s) 346
AsuNHI GCTAGC 1 cut(s) 298
BalI TGGCCA 1 cut(s) 551
BanI GGYRCC 2 cut(s) 179, 226
BbsI GAAGAC 2 cut(s) 12, 479
BbvI GCAGC 4 cut(s) 110, 506, 618, 649
BccI CCATC 4 cut(s) 62, 82, 311, 361
BcgI CGANNNNNNTGC 4 cut(s) 550, 584, 631, 665
BclI TGATCA 1 cut(s) 147
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 4 cut(s) 153, 299, 378, 536
BfmI CTRYAG 1 cut(s) 492
BfoI RGCGCY 2 cut(s) 183, 633
BisI GCNGC 7 cut(s) 124, 157, 178, 276, 495, 607, 663
BlsI GCNGC 7 cut(s) 125, 158, 179, 277, 496, 608, 664
Bme1390I CCNGG 1 cut(s) 342
BmgT120I GGNCC 1 cut(s) 532
BmiI GGNNCC 2 cut(s) 181, 228
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 2 cut(s) 120, 190
BmtI GCTAGC 1 cut(s) 302
BpiI GAAGAC 2 cut(s) 12, 479
Bpu10I CCTNAGC 1 cut(s) 633
BpuEI CTTGAG 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 3 cut(s) 259, 402, 625
BsaXI ACNNNNNCTCC 2 cut(s) 630, 660
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 378
BseDI CCNNGG 3 cut(s) 259, 402, 625
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 1 cut(s) 378
BseXI GCAGC 4 cut(s) 110, 506, 618, 649
BsgI GTGCAG 1 cut(s) 109
Bsh1236I CGCG 1 cut(s) 578
BshFI GGCC 2 cut(s) 534, 551
BshNI GGYRCC 2 cut(s) 179, 226
BsiSI CCGG 1 cut(s) 341
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 1 cut(s) 309
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 2 cut(s) 534, 551
Bsp143I GATC 1 cut(s) 147
Bsp19I CCATGG 1 cut(s) 625
Bsp68I TCGCGA 1 cut(s) 578
BspACI CCGC 3 cut(s) 157, 177, 275
BspANI GGCC 2 cut(s) 534, 551
BspCNI CTCAG 1 cut(s) 521
BspFNI CGCG 1 cut(s) 578
BspLI GGNNCC 2 cut(s) 181, 228
BspMAI CTGCAG 1 cut(s) 496
BspOI GCTAGC 1 cut(s) 302
BspQI GCTCTTC 1 cut(s) 43
BspT107I GGYRCC 2 cut(s) 179, 226
BsrI ACTGG 1 cut(s) 378
BssECI CCNNGG 3 cut(s) 259, 402, 625
BssMI GATC 1 cut(s) 147
BssNI GRCGYC 1 cut(s) 180
BssT1I CCWWGG 3 cut(s) 259, 402, 625
Bst4CI ACNGT 4 cut(s) 432, 448, 566, 646
Bst6I CTCTTC 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 180
BstC8I GCNNGC 4 cut(s) 34, 63, 300, 409
BstDEI CTNAG 2 cut(s) 508, 633
BstDSI CCRYGG 1 cut(s) 625
BstF5I GGATG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 578
BstH2I RGCGCY 2 cut(s) 183, 633
BstHHI GCGC 2 cut(s) 182, 632
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 5 cut(s) 200, 295, 425, 659, 668
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 1 cut(s) 492
BstUI CGCG 1 cut(s) 578
BstV1I GCAGC 4 cut(s) 110, 506, 618, 649
BstV2I GAAGAC 2 cut(s) 12, 479
BsuRI GGCC 2 cut(s) 534, 551
BtgI CCRYGG 1 cut(s) 625
BtsCI GGATG 1 cut(s) 185
BtsIMutI CAGTG 3 cut(s) 428, 516, 642
BtuMI TCGCGA 1 cut(s) 578
Cac8I GCNNGC 4 cut(s) 34, 63, 300, 409
CaiI CAGNNNCTG 1 cut(s) 430
CfoI GCGC 2 cut(s) 182, 632
Cfr13I GGNCC 1 cut(s) 532
Csp6I GTAC 1 cut(s) 622
CviAII CATG 4 cut(s) 58, 592, 619, 626
CviQI GTAC 1 cut(s) 622
DdeI CTNAG 2 cut(s) 508, 633
DinI GGCGCC 1 cut(s) 181
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Eco130I CCWWGG 3 cut(s) 259, 402, 625
EcoO109I RGGNCCY 1 cut(s) 532
EcoT14I CCWWGG 3 cut(s) 259, 402, 625
EcoT22I ATGCAT 1 cut(s) 457
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
ErhI CCWWGG 3 cut(s) 259, 402, 625
FaeI CATG 4 cut(s) 61, 595, 622, 629
FaqI GGGAC 1 cut(s) 384
FatI CATG 4 cut(s) 57, 591, 618, 625
FbaI TGATCA 1 cut(s) 147
Fnu4HI GCNGC 7 cut(s) 124, 157, 178, 276, 495, 607, 663
FokI GGATG 1 cut(s) 172
Fsp4HI GCNGC 7 cut(s) 124, 157, 178, 276, 495, 607, 663
FspBI CTAG 4 cut(s) 153, 299, 378, 536
GlaI GCGC 2 cut(s) 181, 631
GluI GCNGC 7 cut(s) 124, 157, 178, 276, 495, 607, 663
HaeII RGCGCY 2 cut(s) 183, 633
HaeIII GGCC 2 cut(s) 534, 551
HapII CCGG 1 cut(s) 341
HhaI GCGC 2 cut(s) 182, 632
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 4 cut(s) 61, 595, 622, 629
Hin6I GCGC 2 cut(s) 180, 630
HinP1I GCGC 2 cut(s) 180, 630
HinfI GANTC 2 cut(s) 337, 526
HpaII CCGG 1 cut(s) 341
HphI GGTGA 1 cut(s) 346
Hpy188I TCNGA 2 cut(s) 107, 116
Hpy188III TCNNGA 3 cut(s) 85, 197, 577
HpyCH4III ACNGT 4 cut(s) 432, 448, 566, 646
HpyCH4V TGCA 6 cut(s) 61, 126, 211, 455, 494, 665
HpyF10VI GCNNNNNNNGC 5 cut(s) 200, 295, 425, 659, 668
HpyF3I CTNAG 2 cut(s) 508, 633
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 4 cut(s) 61, 595, 622, 629
HspAI GCGC 2 cut(s) 180, 630
KasI GGCGCC 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 1 cut(s) 147
LguI GCTCTTC 1 cut(s) 43
LmnI GCTCC 2 cut(s) 53, 264
LpnPI CCDG 8 cut(s) 18, 122, 317, 354, 359, 393, 410, 515
Lsp1109I GCAGC 4 cut(s) 110, 506, 618, 649
LweI GCATC 2 cut(s) 120, 190
MaeI CTAG 4 cut(s) 153, 299, 378, 536
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 4 cut(s) 17, 30, 37, 484
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 1 cut(s) 438
MluNI TGGCCA 1 cut(s) 551
Mly113I GGCGCC 1 cut(s) 180
MlyI GAGTC 1 cut(s) 535
MmeI TCCRAC 2 cut(s) 213, 442
MnlI CCTC 4 cut(s) 144, 193, 288, 632
Mox20I TGGCCA 1 cut(s) 551
Mph1103I ATGCAT 1 cut(s) 457
MscI TGGCCA 1 cut(s) 551
MslI CAYNNNNRTG 1 cut(s) 66
Msp20I TGGCCA 1 cut(s) 551
MspI CCGG 1 cut(s) 341
MspR9I CCNGG 1 cut(s) 342
MvnI CGCG 1 cut(s) 578
MwoI GCNNNNNNNGC 5 cut(s) 200, 295, 425, 659, 668
NarI GGCGCC 1 cut(s) 180
NciI CCSGG 1 cut(s) 342
NcoI CCATGG 1 cut(s) 625
NdeII GATC 1 cut(s) 147
NheI GCTAGC 1 cut(s) 298
NlaIII CATG 4 cut(s) 61, 595, 622, 629
NlaIV GGNNCC 2 cut(s) 181, 228
NruI TCGCGA 1 cut(s) 578
NsiI ATGCAT 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 337
PkrI GCNGC 7 cut(s) 125, 158, 179, 277, 496, 608, 664
PleI GAGTC 1 cut(s) 534
PluTI GGCGCC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 534
PspN4I GGNNCC 2 cut(s) 181, 228
PspPI GGNCC 1 cut(s) 532
PstI CTGCAG 1 cut(s) 496
PstNI CAGNNNCTG 1 cut(s) 430
RruI TCGCGA 1 cut(s) 578
RsaI GTAC 1 cut(s) 623
RsaNI GTAC 1 cut(s) 622
RseI CAYNNNNRTG 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 43
SatI GCNGC 7 cut(s) 124, 157, 178, 276, 495, 607, 663
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 532
SchI GAGTC 1 cut(s) 535
ScrFI CCNGG 1 cut(s) 342
SetI ASST 5 cut(s) 34, 228, 269, 499, 673
SfaNI GCATC 2 cut(s) 120, 190
SfcI CTRYAG 1 cut(s) 492
SfoI GGCGCC 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
Sse9I AATT 1 cut(s) 438
SsiI CCGC 3 cut(s) 157, 177, 275
SspDI GGCGCC 1 cut(s) 179
SspMI CTAG 4 cut(s) 153, 299, 378, 536
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 3 cut(s) 259, 402, 625
TaaI ACNGT 4 cut(s) 432, 448, 566, 646
TasI AATT 1 cut(s) 438
TauI GCSGC 3 cut(s) 159, 180, 278
TfiI GAWTC 1 cut(s) 337
TscAI CASTG 3 cut(s) 435, 516, 649
TseI GCWGC 4 cut(s) 123, 494, 606, 662
TspDTI ATGAA 6 cut(s) 46, 179, 257, 271, 408, 580
TspGWI ACGGA 4 cut(s) 40, 306, 369, 373
TspRI CASTG 3 cut(s) 435, 516, 649
XspI CTAG 4 cut(s) 153, 299, 378, 536
Zsp2I ATGCAT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.