Rh2BG627900

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000317
Physical Location & Seq
Forward (+)
84937150 .. 84938115
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG627900.1

Sequence Viewer

Length: 966 bp
ATGCTCGTCTGCCAGGGCTACCTCACACCAAGATTAGCCTTTCAAACCATTCTTATTTTATTAGTCACGAGTCGGGTCATAGCAGATGCTGGAAGCATGACATCGGACCTTACCAATGGCCGGGAAGCAGTTGGGTCAATTTTCAGTATCTTGGACCGAACCACAAGAATCGAACCCCAAGTTCCAAAAGACTCCCAGGTTGAAAAACTAATGGGCGGGGTCCACTTTTGTGATGTGTACTTTGCATACCTGACTAGGCCCAACGTGATGATCTTCCGAGGCTTCTCAATGAATATTGAAGCCGGAAAATCTACGGCATTGGTGGGGCAAAATAGGTCGGGTAAATCAACCATTATCGGACTGATCGAGAGATTTTATGATCCAATCCACGGCGTGGTGGAGATCGACTGTCATGATGTAAAGTCGTACCACCTTAGGTCATTGAGGAAACACATGGCATTGGTAAGCCAAGAACCTACATTATTTGTTGGGACCATAAGAGAAAACATTGTATTTGGAGCGTCAGATAACGTCGATAAAACTATGATCATTGAGGCAGCAAGGGTGGCCAATGCTCATGATTTCATCAGCGGGTTAAAGGACGGGTACAACACATCGTGTGGGGGTGGAGGATTGCAACTCTCTGGGGGTCAGAAGCAACGCATTGCTATAGCAAGAGCTATACTGAGAAACCCTGCAGTGTTGTTACTTGACGAGGCAACCAGCGCGCTAGATAGCCATTCAGAGAAGGTGGTTCAAGATGCGCTGGAGCATGTCATGGTGGGGAGGACCAGTGTCGTAGTGGCGCACAGGTTGAGTACCATACAGAACTGTGACCTCATTACTGTGCTTGATAAAGGAAAGGTAGTGGAGAATGGGTCTCACTCTTCTCTTTTGGCCAAGGGACCTTCAGGAGCTTACTCCTTGGTCAATATCACAAGAAGTACACAATCTTCAGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

321

Amino Acids

34.76

Weight (kDa)

7.15

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 93 - 242 4.4e-29 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 394
AccII CGCG 1 cut(s) 728
AciI CCGC 2 cut(s) 216, 591
AclWI GGATC 1 cut(s) 374
AcoI YGGCCR 3 cut(s) 118, 567, 897
AcuI CTGAAG 2 cut(s) 894, 939
AdeI CACNNNGTG 2 cut(s) 394, 618
AfaI GTAC 5 cut(s) 239, 428, 608, 820, 946
AfiI CCNNNNNNNGG 3 cut(s) 120, 389, 394
AgsI TTSAA 4 cut(s) 44, 203, 299, 758
AjnI CCWGG 2 cut(s) 12, 195
AleI CACNNNNGTG 1 cut(s) 228
AluBI AGCT 2 cut(s) 680, 917
AluI AGCT 2 cut(s) 680, 917
Alw26I GTCTC 1 cut(s) 885
AlwI GGATC 1 cut(s) 374
AlwNI CAGNNNCTG 1 cut(s) 89
AoxI GGCC 4 cut(s) 118, 257, 567, 897
ApeKI GCWGC 1 cut(s) 557
AspLEI GCGC 4 cut(s) 728, 730, 766, 808
AspS9I GGNCC 7 cut(s) 106, 154, 220, 258, 492, 789, 905
AsuC2I CCSGG 1 cut(s) 122
AvaII GGWCC 6 cut(s) 106, 154, 220, 492, 789, 905
AxyI CCTNAGG 1 cut(s) 434
BalI TGGCCA 2 cut(s) 569, 899
BarI GAAGNNNNNNTAC 1 cut(s) 937
BauI CACGAG 1 cut(s) 67
BbvI GCAGC 1 cut(s) 569
BceAI ACGGC 2 cut(s) 330, 406
BciT130I CCWGG 2 cut(s) 14, 197
BclI TGATCA 1 cut(s) 546
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 885
BfaI CTAG 2 cut(s) 255, 731
BfmI CTRYAG 2 cut(s) 669, 696
BisI GCNGC 1 cut(s) 558
BlsI GCNGC 1 cut(s) 559
Bme1390I CCNGG 3 cut(s) 14, 122, 197
Bme18I GGWCC 6 cut(s) 106, 154, 220, 492, 789, 905
BmgT120I GGNCC 7 cut(s) 106, 154, 220, 258, 492, 789, 905
BmiI GGNNCC 3 cut(s) 221, 493, 906
BmrFI CCNGG 3 cut(s) 14, 122, 197
BmsI GCATC 2 cut(s) 76, 751
BoxI GACNNNNGTC 1 cut(s) 794
BpmI CTGGAG 1 cut(s) 788
BpuMI CCSGG 1 cut(s) 122
BsaI GGTCTC 1 cut(s) 885
BsaJI CCNNGG 6 cut(s) 13, 195, 277, 388, 900, 924
BsaXI ACNNNNNCTCC 4 cut(s) 778, 808, 863, 893
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 389, 394
Bse1I ACTGG 1 cut(s) 792
Bse21I CCTNAGG 1 cut(s) 434
Bse3DI GCAATG 1 cut(s) 663
BseBI CCWGG 2 cut(s) 14, 197
BseDI CCNNGG 6 cut(s) 13, 195, 277, 388, 900, 924
BseLI CCNNNNNNNGG 3 cut(s) 120, 389, 394
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 1 cut(s) 677
BseNI ACTGG 1 cut(s) 792
BsePI GCGCGC 1 cut(s) 726
BseXI GCAGC 1 cut(s) 569
Bsh1236I CGCG 1 cut(s) 728
BshFI GGCC 4 cut(s) 120, 259, 569, 899
BsiSI CCGG 2 cut(s) 121, 303
BslFI GGGAC 2 cut(s) 505, 918
BslI CCNNNNNNNGG 3 cut(s) 120, 389, 394
BsmAI GTCTC 1 cut(s) 885
BsmFI GGGAC 2 cut(s) 505, 918
BsnI GGCC 4 cut(s) 120, 259, 569, 899
Bso31I GGTCTC 1 cut(s) 885
Bsp143I GATC 5 cut(s) 270, 363, 379, 402, 546
BspACI CCGC 2 cut(s) 216, 591
BspANI GGCC 4 cut(s) 120, 259, 569, 899
BspCNI CTCAG 1 cut(s) 678
BspFNI CGCG 1 cut(s) 728
BspHI TCATGA 2 cut(s) 412, 577
BspLI GGNNCC 3 cut(s) 221, 493, 906
BspMAI CTGCAG 1 cut(s) 700
BspPI GGATC 1 cut(s) 374
BspTNI GGTCTC 1 cut(s) 885
BsrDI GCAATG 1 cut(s) 663
BsrI ACTGG 1 cut(s) 792
BssECI CCNNGG 6 cut(s) 13, 195, 277, 388, 900, 924
BssHII GCGCGC 1 cut(s) 726
BssMI GATC 5 cut(s) 270, 363, 379, 402, 546
BssSI CACGAG 1 cut(s) 67
BssT1I CCWWGG 2 cut(s) 900, 924
Bst2BI CACGAG 1 cut(s) 67
Bst2UI CCWGG 2 cut(s) 14, 197
Bst4CI ACNGT 3 cut(s) 410, 833, 847
Bst6I CTCTTC 1 cut(s) 892
BstC8I GCNNGC 1 cut(s) 728
BstDEI CTNAG 2 cut(s) 434, 686
BstDSI CCRYGG 1 cut(s) 388
BstFNI CGCG 1 cut(s) 728
BstHHI GCGC 4 cut(s) 728, 730, 766, 808
BstKTI GATC 5 cut(s) 273, 366, 382, 405, 549
BstMAI GTCTC 1 cut(s) 885
BstMBI GATC 5 cut(s) 270, 363, 379, 402, 546
BstMWI GCNNNNNNNGC 2 cut(s) 566, 725
BstNI CCWGG 2 cut(s) 14, 197
BstNSI RCATGY 1 cut(s) 776
BstPAI GACNNNNGTC 1 cut(s) 794
BstSCI CCNGG 3 cut(s) 12, 120, 195
BstSFI CTRYAG 2 cut(s) 669, 696
BstUI CGCG 1 cut(s) 728
BstV1I GCAGC 1 cut(s) 569
Bsu36I CCTNAGG 1 cut(s) 434
BsuRI GGCC 4 cut(s) 120, 259, 569, 899
BtgI CCRYGG 1 cut(s) 388
BtsI GCAGTG 1 cut(s) 705
BtsIMutI CAGTG 2 cut(s) 705, 799
Cac8I GCNNGC 1 cut(s) 728
CaiI CAGNNNCTG 1 cut(s) 89
CciI TCATGA 2 cut(s) 412, 577
CfoI GCGC 4 cut(s) 728, 730, 766, 808
Cfr13I GGNCC 7 cut(s) 106, 154, 220, 258, 492, 789, 905
CseI GACGC 1 cut(s) 510
Csp6I GTAC 5 cut(s) 238, 427, 607, 819, 945
CviAII CATG 6 cut(s) 97, 413, 454, 578, 773, 778
CviQI GTAC 5 cut(s) 238, 427, 607, 819, 945
DdeI CTNAG 2 cut(s) 434, 686
DpnI GATC 5 cut(s) 272, 365, 381, 404, 548
DpnII GATC 5 cut(s) 270, 363, 379, 402, 546
DraIII CACNNNGTG 2 cut(s) 394, 618
EaeI YGGCCR 3 cut(s) 118, 567, 897
Eam1104I CTCTTC 1 cut(s) 892
EarI CTCTTC 1 cut(s) 892
Eco130I CCWWGG 2 cut(s) 900, 924
Eco31I GGTCTC 1 cut(s) 885
Eco47I GGWCC 6 cut(s) 106, 154, 220, 492, 789, 905
Eco57I CTGAAG 2 cut(s) 894, 939
Eco81I CCTNAGG 1 cut(s) 434
EcoO109I RGGNCCY 1 cut(s) 905
EcoRII CCWGG 2 cut(s) 12, 195
EcoT14I CCWWGG 2 cut(s) 900, 924
ErhI CCWWGG 2 cut(s) 900, 924
FaeI CATG 6 cut(s) 100, 416, 457, 581, 776, 781
FaqI GGGAC 2 cut(s) 505, 918
FatI CATG 6 cut(s) 96, 412, 453, 577, 772, 777
FauI CCCGC 2 cut(s) 209, 584
FbaI TGATCA 1 cut(s) 546
Fnu4HI GCNGC 1 cut(s) 558
Fsp4HI GCNGC 1 cut(s) 558
FspBI CTAG 2 cut(s) 255, 731
GlaI GCGC 4 cut(s) 727, 729, 765, 807
GluI GCNGC 1 cut(s) 558
GsuI CTGGAG 1 cut(s) 788
HaeIII GGCC 4 cut(s) 120, 259, 569, 899
HapII CCGG 2 cut(s) 121, 303
HgaI GACGC 1 cut(s) 510
HhaI GCGC 4 cut(s) 728, 730, 766, 808
Hin1II CATG 6 cut(s) 100, 416, 457, 581, 776, 781
Hin6I GCGC 4 cut(s) 726, 728, 764, 806
HinP1I GCGC 4 cut(s) 726, 728, 764, 806
HinfI GANTC 3 cut(s) 70, 168, 191
HpaII CCGG 2 cut(s) 121, 303
Hpy166II GTNNAC 3 cut(s) 223, 238, 947
Hpy188I TCNGA 7 cut(s) 106, 278, 359, 526, 654, 745, 958
Hpy188III TCNNGA 6 cut(s) 67, 367, 413, 578, 758, 912
Hpy8I GTNNAC 3 cut(s) 223, 238, 947
Hpy99I CGWCG 1 cut(s) 536
HpyAV CCTTC 2 cut(s) 742, 918
HpyCH4III ACNGT 3 cut(s) 410, 833, 847
HpyCH4IV ACGT 2 cut(s) 264, 531
HpyCH4V TGCA 3 cut(s) 245, 637, 698
HpyF10VI GCNNNNNNNGC 2 cut(s) 566, 725
HpyF3I CTNAG 2 cut(s) 434, 686
HpySE526I ACGT 2 cut(s) 264, 531
Hsp92II CATG 6 cut(s) 100, 416, 457, 581, 776, 781
HspAI GCGC 4 cut(s) 726, 728, 764, 806
Ksp22I TGATCA 1 cut(s) 546
Kzo9I GATC 5 cut(s) 270, 363, 379, 402, 546
LmnI GCTCC 3 cut(s) 518, 769, 914
Lsp1109I GCAGC 1 cut(s) 569
LweI GCATC 2 cut(s) 76, 751
MaeI CTAG 2 cut(s) 255, 731
MaeII ACGT 2 cut(s) 264, 531
MaeIII GTNAC 3 cut(s) 64, 705, 833
MalI GATC 5 cut(s) 272, 365, 381, 404, 548
MboI GATC 5 cut(s) 270, 363, 379, 402, 546
MboII GAAGA 3 cut(s) 265, 879, 945
MlsI TGGCCA 2 cut(s) 569, 899
MluCI AATT 1 cut(s) 138
MluNI TGGCCA 2 cut(s) 569, 899
MlyI GAGTC 2 cut(s) 79, 185
MnlI CCTC 8 cut(s) 32, 272, 438, 547, 623, 709, 780, 848
Mox20I TGGCCA 2 cut(s) 569, 899
MscI TGGCCA 2 cut(s) 569, 899
MseI TTAA 2 cut(s) 596, 964
MslI CAYNNNNRTG 2 cut(s) 228, 845
Msp20I TGGCCA 2 cut(s) 569, 899
MspA1I CMGCKG 1 cut(s) 591
MspI CCGG 2 cut(s) 121, 303
MspR9I CCNGG 3 cut(s) 14, 122, 197
MvaI CCWGG 2 cut(s) 14, 197
MvnI CGCG 1 cut(s) 728
MwoI GCNNNNNNNGC 2 cut(s) 566, 725
NciI CCSGG 1 cut(s) 122
NdeII GATC 5 cut(s) 270, 363, 379, 402, 546
NlaIII CATG 6 cut(s) 100, 416, 457, 581, 776, 781
NlaIV GGNNCC 3 cut(s) 221, 493, 906
NmuCI GTSAC 2 cut(s) 64, 833
NspI RCATGY 1 cut(s) 776
OliI CACNNNNGTG 1 cut(s) 228
PagI TCATGA 2 cut(s) 412, 577
PauI GCGCGC 1 cut(s) 726
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PfeI GAWTC 1 cut(s) 168
PflMI CCANNNNNTGG 1 cut(s) 394
PkrI GCNGC 1 cut(s) 559
PleI GAGTC 2 cut(s) 78, 185
PpsI GAGTC 2 cut(s) 78, 185
PpuMI RGGWCCY 1 cut(s) 905
PshAI GACNNNNGTC 1 cut(s) 794
Psp5II RGGWCCY 1 cut(s) 905
Psp6I CCWGG 2 cut(s) 12, 195
PspGI CCWGG 2 cut(s) 12, 195
PspN4I GGNNCC 3 cut(s) 221, 493, 906
PspPI GGNCC 7 cut(s) 106, 154, 220, 258, 492, 789, 905
PspPPI RGGWCCY 1 cut(s) 905
PstI CTGCAG 1 cut(s) 700
PstNI CAGNNNCTG 1 cut(s) 89
PteI GCGCGC 1 cut(s) 726
RsaI GTAC 5 cut(s) 239, 428, 608, 820, 946
RsaNI GTAC 5 cut(s) 238, 427, 607, 819, 945
RseI CAYNNNNRTG 2 cut(s) 228, 845
SaqAI TTAA 2 cut(s) 596, 964
SatI GCNGC 1 cut(s) 558
Sau3AI GATC 5 cut(s) 270, 363, 379, 402, 546
Sau96I GGNCC 7 cut(s) 106, 154, 220, 258, 492, 789, 905
SchI GAGTC 2 cut(s) 79, 185
ScrFI CCNGG 3 cut(s) 14, 122, 197
SfaNI GCATC 2 cut(s) 76, 751
SfcI CTRYAG 2 cut(s) 669, 696
SinI GGWCC 6 cut(s) 106, 154, 220, 492, 789, 905
SmiMI CAYNNNNRTG 2 cut(s) 228, 845
Sse9I AATT 1 cut(s) 138
SsiI CCGC 2 cut(s) 216, 591
SspI AATATT 1 cut(s) 295
SspMI CTAG 2 cut(s) 255, 731
StyD4I CCNGG 3 cut(s) 12, 120, 195
StyI CCWWGG 2 cut(s) 900, 924
TaaI ACNGT 3 cut(s) 410, 833, 847
TaiI ACGT 2 cut(s) 267, 534
TaqI TCGA 4 cut(s) 171, 366, 405, 534
TaqII GACCGA 1 cut(s) 171
TasI AATT 1 cut(s) 138
TatI WGTACW 2 cut(s) 237, 944
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 2 cut(s) 596, 964
Tru9I TTAA 2 cut(s) 596, 964
TscAI CASTG 2 cut(s) 705, 799
TseFI GTSAC 2 cut(s) 64, 833
TseI GCWGC 1 cut(s) 557
Tsp45I GTSAC 2 cut(s) 64, 833
TspDTI ATGAA 2 cut(s) 305, 574
TspRI CASTG 2 cut(s) 705, 799
Van91I CCANNNNNTGG 1 cut(s) 394
VpaK11BI GGWCC 6 cut(s) 106, 154, 220, 492, 789, 905
XceI RCATGY 1 cut(s) 776
XcmI CCANNNNNNNNNTGG 1 cut(s) 799
XspI CTAG 2 cut(s) 255, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.