RchiOBHm_Chr5g0037681

Multidrug pheromone exporter, MDR family, ABC transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000317
Physical Location & Seq
Forward (+)
32324155 .. 32327985
3831 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31638

Sequence Viewer

Length: 2781 bp
ATGATGTTCATTCTTAGTGAGGTGATCAACTCATATGGAAGTTCCAGTGGCGCTTTGACTAATGTTGATGTAGACAAGTTTGCACTCAGGCTATTCTATGTTGCTATTGGAGTTGGACTTGCTGCATTTGTTGAAGGGTTATGTTGGACAAGAACCGCAGAGAGGCAGACTTCAAGAATGAGAATGAAGTATCTTAATTCTGTTCTCAAACAAGAAGTTTCCTTCTTTGACACCCAAACTGCTGGTTCTTCAACAACCTTCCAAGTTATTTCAATCATCTCCTCCGATGCCAATGCAGTGCAAGTTGCTTTATGTGAGAAGATACCTGACTGCATAGCATACATGTCAACTTTCTTCTTCTGCCATATATTTGCCTTCACACTTTCATGGAGGTTGGCCTTGGCTGCGATGCCACTTTCAATCTCGTTCATAGCTCCTGGGCTTTTCTTTGGAAGTATCTTGATGGGCCTTGTAATGAAGGGGATTGGGGCTTATGGAGTTGCCGGAGGGATTGCTGAACAAGCAATTTCTTCGGTAAGAACTGTATATTCATATGTTGGGGAGAACCAAACACTAAAGAGGTTCAGCATTGCACTTCAGACTGTTACAAAAATTGGAATCAAGGTGGGTCTTGTGAAAGGAATCCTGATGGGAAGCATGGGAATCATTTACGTCGGTTGGGGTTTTCAGGCATGGGTTGGGACTTATTTGGTTACTCAAAAAGGAGAAGATGGAGGGCATGTCTTCGTAGCCGGTTTCAATGTCCTCATGGGAGGCCTGAGTATTTTAAGTGCACTTCCAAATTTAACTGCCATCACAGAGGCATTAGCTGCTACAACACGAATTCTTGAAATGATTGACCGTGTTCCTAGTATTGAAACTGAAGACAGAAAGGGGAAGGCTTTGTCACATGTGAGAGGAGAAATAGAGTTCCAAGACATATACTTCAGTTACCCATCAAGACCTGACAGCCAAGTTTTACAAGGCTTGAATCTTAAGATTCCGGCTGGTAAGAGTGTAGGTCTAGTTGGGGGAAGTGGCTCTGGCAAGTCGACAATCATTTCATTGATCGAAAGATTTTATGACCCGGTTGAAGGAGAAATACTCTTGGATGGGCATGCAATCAGAAGACTTCAACCGAAATGGTTGAGATCCAAAATGGGTTTAGTTAATCAGGAACCTGTTCTGTTTGCAACTTCCATAAGAGAGAACATACTTTTTGGAAAGGAAGGAGCTTCAATGGATGAAATAATAAATGCAGCTAAAGCTGCAAACGCACATGACTTCATTGTCAAGTTACCTGATGGATATGAAACTCAAGCTGGTCAATTTGGATTCCAACTGTCTGGTGGGCAAAAGCAGCGAATAGCCATAGCGAGAGCTCTACTCAGGGATCCGAAAATCTTACTTCTGGATGAAGCAACTAGTGCATTGGATGCACAGTCTGAAAGGGTAGTTCAGGAGGCAATTGATCAAGCATCAAAAGGGAGGACAACAATCATTATTGCCCATCGGCTATCAACAATCCGAACAGCAAACTTGATTGTGGTTCTTCAAGCTGGGAAAGTAATTGAATCAGGCTCACACAATGAGTTAATGAGAAAGAATGGGGAGAAGGGAGGTGAATACTTCAAGATGGTCCAGTTGCAGCAGATGGCAACCCAAAATGAAGCTCCGGAAGATAGTCAAGTATATGATAAACCTTGGCGTAGGAGGAGTGTTGCACCAAGCCCCATTAGTGCCCGATCAAGTACTCACAACACTCCAATATACTCCTTCAGTGGTACTGGAATGTCCATCTCTATGGGTACCCCCGTGTCCATGGGGACACCCAGGTCTACCATGGGCACACCCTATTCGTTCTCTGTCCAATACGATCCTGATGATGGGAGTTATGATGAAGACTTAAAGAACTCAACTTATCCTCCTCCTTCTCAATGGCGCCTGCTGAAGATGAATGCACCAGAGTGGGGACAAGCATTACTTGGATGCTTGGGTGCAATAGGTTCTGGGGCAGTACAACCTATTAATGCCTACTGTGTAGGCTCACTTATATCAGTCTACTTCCTCCAGGATAAATCAGAAATCAAGTCCCAATCAAGAGTCTTGACCTTTGTTTTCATAGGCATTGGTGTTTTCAACTTCTTCACCAATCTCATCCAACACTATAACTTTGCAATTATGGGAGAAAAGTTGACCACGAGGGTAAGAGAGCAACTGCTTGAAAAGCTTATGACGTTTGAAATTGGGTGGTTTGATGAAGATGAGAACACAAGTGCAGCTATCTGTGCAAGGCTAGCCACTGAAGTAAACATGGTTCGATCTCTTGTTGGTGACAGAATGTCATTGCTGGTCCAAGCAGTTTTCGGGGCTACCTTTGCTTACACAGTAGGACTTGTGCTGACATGGAGACTATCCCTTGTGATGATAGCAGTGCAGCCACTAGTCATTGGGAGCTTTTATGCAAGGAGTATCTTGATGAAGAGTATGGGTGAGAAGGCGAGAAAAGCTCAAAAAGAAGGAAGCCAATTGGCAAGTGAAGCCGTTATTAACCACAGAACTATAACAGCCTTCTCTTCACAGAAAAAGATTCTGGGGCTGTTTGGTGCAACCTTGGCTGGTCCTAAGAAGGAGAGTATCAAGCAATCCTATGTTTCTGGTGCTGGCTTATTTAGCTCCCAATTCTTTAACACGGCGGCTACAGCTTTAGCCTACTGGTATGGTGGGAGGCTACTGGTGCTAGAGTTGATAACCCCAAAGCATCTTTTCAGGCCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

926

Amino Acids

101.06

Weight (kDa)

9.05

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 2 - 258 5.2e-36 ABC transporter transmembrane region
ABC_tran PF00005 327 - 476 2.6e-33 ABC transporter
ABC_membrane PF00664 662 - 917 3.3e-44 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1289, 1834
Acc65I GGTACC 1 cut(s) 1808
AccB1I GGYRCC 2 cut(s) 1808, 1941
AccI GTMKAC 4 cut(s) 72, 1052, 1838, 2061
AccIII TCCGGA 1 cut(s) 1675
AciI CCGC 2 cut(s) 156, 2696
AclWI GGATC 4 cut(s) 1146, 1388, 1401, 1871
AcsI RAATTY 2 cut(s) 802, 843
AcuI CTGAAG 6 cut(s) 581, 903, 931, 1762, 1970, 2325
AcyI GRCGYC 1 cut(s) 1942
AfaI GTAC 4 cut(s) 1753, 1786, 1810, 2019
AfiI CCNNNNNNNGG 4 cut(s) 162, 1094, 1886, 1970
AflII CTTAAG 1 cut(s) 995
AflIII ACRYGT 2 cut(s) 342, 910
AhdI GACNNNNNGTC 1 cut(s) 2341
AhlI ACTAGT 2 cut(s) 1424, 2443
AjnI CCWGG 3 cut(s) 436, 1832, 2070
AleI CACNNNNGTG 1 cut(s) 1966
Alw21I GWGCWC 2 cut(s) 796, 1384
Alw26I GTCTC 1 cut(s) 2404
Alw44I GTGCAC 1 cut(s) 792
AlwI GGATC 4 cut(s) 1146, 1388, 1401, 1871
Aor13HI TCCGGA 1 cut(s) 1675
AoxI GGCC 4 cut(s) 396, 466, 775, 2771
ApaLI GTGCAC 1 cut(s) 792
ApeKI GCWGC 9 cut(s) 122, 404, 830, 1259, 1268, 1360, 1648, 2279, 2437
ApoI RAATTY 2 cut(s) 802, 843
AseI ATTAAT 1 cut(s) 2028
Asp700I GAANNNNTTC 1 cut(s) 1182
Asp718I GGTACC 1 cut(s) 1808
AspLEI GCGC 2 cut(s) 53, 1944
AspS9I GGNCC 4 cut(s) 466, 1639, 2353, 2621
AsuC2I CCSGG 1 cut(s) 1088
AsuHPI GGTGA 5 cut(s) 34, 1634, 2140, 2345, 2504
AsuNHI GCTAGC 1 cut(s) 2296
AvaII GGWCC 3 cut(s) 1639, 2353, 2621
BaeGI GKGCMC 3 cut(s) 796, 1744, 1850
BaeI ACNNNNGTAYC 2 cut(s) 1800, 1833
BamHI GGATCC 1 cut(s) 1393
BanI GGYRCC 2 cut(s) 1808, 1941
BanII GRGCYC 1 cut(s) 1384
BarI GAAGNNNNNNTAC 2 cut(s) 1086, 1118
BauI CACGAG 1 cut(s) 2200
BbsI GAAGAC 4 cut(s) 736, 891, 1135, 1908
Bbv12I GWGCWC 2 cut(s) 796, 1384
BbvI GCAGC 9 cut(s) 109, 391, 817, 1255, 1271, 1372, 1660, 2291, 2449
BceAI ACGGC 2 cut(s) 2528, 2709
BcgI CGANNNNNNTGC 4 cut(s) 275, 309, 513, 547
BciT130I CCWGG 3 cut(s) 438, 1834, 2072
BclI TGATCA 2 cut(s) 24, 1471
BcnI CCSGG 1 cut(s) 1088
BcoDI GTCTC 1 cut(s) 2404
BcuI ACTAGT 2 cut(s) 1424, 2443
BfaI CTAG 6 cut(s) 870, 1025, 1425, 2297, 2444, 2741
BfmI CTRYAG 1 cut(s) 2700
BfoI RGCGCY 2 cut(s) 54, 1945
BfrI CTTAAG 1 cut(s) 995
BmcAI AGTACT 1 cut(s) 1753
Bme1390I CCNGG 4 cut(s) 438, 1088, 1834, 2072
Bme18I GGWCC 3 cut(s) 1639, 2353, 2621
BmeRI GACNNNNNGTC 1 cut(s) 2341
BmgT120I GGNCC 4 cut(s) 466, 1639, 2353, 2621
BmiI GGNNCC 4 cut(s) 1179, 1395, 1810, 1943
BmrFI CCNGG 4 cut(s) 438, 1088, 1834, 2072
BmsI GCATC 6 cut(s) 277, 399, 1426, 1487, 1979, 2770
BmtI GCTAGC 1 cut(s) 2300
BpiI GAAGAC 4 cut(s) 736, 891, 1135, 1908
BplI GAGNNNNNCTC 6 cut(s) 1089, 1121, 1371, 1403, 2494, 2526
BpmI CTGGAG 1 cut(s) 2054
BpuEI CTTGAG 1 cut(s) 1302
BpuMI CCSGG 1 cut(s) 1088
BsaHI GRCGYC 1 cut(s) 1942
BsaJI CCNNGG 7 cut(s) 399, 437, 1703, 1821, 1832, 1842, 2613
BsaWI WCCGGW 1 cut(s) 1675
BsaXI ACNNNNNCTCC 4 cut(s) 726, 756, 1909, 1939
Bsc4I CCNNNNNNNGG 4 cut(s) 162, 1094, 1886, 1970
Bse118I RCCGGY 1 cut(s) 752
Bse1I ACTGG 5 cut(s) 45, 1642, 1792, 2720, 2739
Bse3DI GCAATG 2 cut(s) 588, 2345
BseAI TCCGGA 1 cut(s) 1675
BseBI CCWGG 3 cut(s) 438, 1834, 2072
BseDI CCNNGG 7 cut(s) 399, 437, 1703, 1821, 1832, 1842, 2613
BseGI GGATG 6 cut(s) 1117, 1249, 1420, 1441, 1994, 2157
BseLI CCNNNNNNNGG 4 cut(s) 162, 1094, 1886, 1970
BseMI GCAATG 2 cut(s) 588, 2345
BseMII CTCAG 3 cut(s) 100, 770, 1402
BseNI ACTGG 5 cut(s) 45, 1642, 1792, 2720, 2739
BseRI GAGGAG 4 cut(s) 271, 933, 1729, 1917
BseSI GKGCMC 3 cut(s) 796, 1744, 1850
BseXI GCAGC 9 cut(s) 109, 391, 817, 1255, 1271, 1372, 1660, 2291, 2449
BseYI CCCAGC 1 cut(s) 1559
BsgI GTGCAG 2 cut(s) 2298, 2456
BshFI GGCC 4 cut(s) 398, 468, 777, 2773
BshNI GGYRCC 2 cut(s) 1808, 1941
BsiHKAI GWGCWC 2 cut(s) 796, 1384
BsiSI CCGG 5 cut(s) 504, 753, 1004, 1088, 1676
BslFI GGGAC 4 cut(s) 715, 1840, 1986, 2077
BslI CCNNNNNNNGG 4 cut(s) 162, 1094, 1886, 1970
BsmAI GTCTC 1 cut(s) 2404
BsmFI GGGAC 4 cut(s) 715, 1840, 1986, 2077
BsmI GAATGC 1 cut(s) 1963
BsnI GGCC 4 cut(s) 398, 468, 777, 2773
Bsp1286I GDGCHC 4 cut(s) 796, 1384, 1744, 1850
Bsp13I TCCGGA 1 cut(s) 1675
Bsp143I GATC 8 cut(s) 24, 1068, 1151, 1393, 1471, 1745, 1876, 2321
Bsp19I CCATGG 2 cut(s) 1821, 1842
BspACI CCGC 2 cut(s) 156, 2696
BspANI GGCC 4 cut(s) 398, 468, 777, 2773
BspCNI CTCAG 3 cut(s) 99, 771, 1401
BspEI TCCGGA 1 cut(s) 1675
BspLI GGNNCC 4 cut(s) 1179, 1395, 1810, 1943
BspOI GCTAGC 1 cut(s) 2300
BspPI GGATC 4 cut(s) 1146, 1388, 1401, 1871
BspT107I GGYRCC 2 cut(s) 1808, 1941
BspTI CTTAAG 1 cut(s) 995
BsrDI GCAATG 2 cut(s) 588, 2345
BsrFI RCCGGY 1 cut(s) 752
BsrI ACTGG 5 cut(s) 45, 1642, 1792, 2720, 2739
BssAI RCCGGY 1 cut(s) 752
BssECI CCNNGG 7 cut(s) 399, 437, 1703, 1821, 1832, 1842, 2613
BssMI GATC 8 cut(s) 24, 1068, 1151, 1393, 1471, 1745, 1876, 2321
BssNI GRCGYC 1 cut(s) 1942
BssSI CACGAG 1 cut(s) 2200
BssT1I CCWWGG 5 cut(s) 399, 1703, 1821, 1842, 2613
Bst2BI CACGAG 1 cut(s) 2200
Bst2UI CCWGG 3 cut(s) 438, 1834, 2072
Bst4CI ACNGT 7 cut(s) 544, 604, 863, 1344, 1443, 2039, 2389
Bst6I CTCTTC 2 cut(s) 2477, 2581
BstACI GRCGYC 1 cut(s) 1942
BstAFI CTTAAG 1 cut(s) 995
BstAPI GCANNNNNTGC 3 cut(s) 830, 1427, 1436
BstC8I GCNNGC 4 cut(s) 1119, 1946, 2298, 2665
BstDEI CTNAG 5 cut(s) 14, 86, 779, 1388, 2625
BstDSI CCRYGG 2 cut(s) 1821, 1842
BstF5I GGATG 6 cut(s) 1117, 1249, 1420, 1441, 1994, 2157
BstH2I RGCGCY 2 cut(s) 54, 1945
BstHHI GCGC 2 cut(s) 53, 1944
BstKTI GATC 8 cut(s) 27, 1071, 1154, 1396, 1474, 1748, 1879, 2324
BstMAI GTCTC 1 cut(s) 2404
BstMBI GATC 8 cut(s) 24, 1068, 1151, 1393, 1471, 1745, 1876, 2321
BstNI CCWGG 3 cut(s) 438, 1834, 2072
BstNSI RCATGY 4 cut(s) 346, 743, 914, 1121
BstSCI CCNGG 4 cut(s) 436, 1086, 1832, 2070
BstSFI CTRYAG 1 cut(s) 2700
BstSLI GKGCMC 3 cut(s) 796, 1744, 1850
BstV1I GCAGC 9 cut(s) 109, 391, 817, 1255, 1271, 1372, 1660, 2291, 2449
BstV2I GAAGAC 4 cut(s) 736, 891, 1135, 1908
BstX2I RGATCY 2 cut(s) 1151, 1393
BstXI CCANNNNNNTGG 3 cut(s) 242, 1346, 1804
BstYI RGATCY 2 cut(s) 1151, 1393
BsuRI GGCC 4 cut(s) 398, 468, 777, 2773
BtgI CCRYGG 2 cut(s) 1821, 1842
BtgZI GCGATG 1 cut(s) 422
BtsCI GGATG 6 cut(s) 1117, 1249, 1420, 1441, 1994, 2157
BtsI GCAGTG 2 cut(s) 303, 2439
BtsIMutI CAGTG 5 cut(s) 52, 303, 1786, 2301, 2439
Cac8I GCNNGC 4 cut(s) 1119, 1946, 2298, 2665
CfoI GCGC 2 cut(s) 53, 1944
Cfr10I RCCGGY 1 cut(s) 752
Cfr13I GGNCC 4 cut(s) 466, 1639, 2353, 2621
Csp6I GTAC 4 cut(s) 1752, 1785, 1809, 2018
CviQI GTAC 4 cut(s) 1752, 1785, 1809, 2018
DdeI CTNAG 5 cut(s) 14, 86, 779, 1388, 2625
DinI GGCGCC 1 cut(s) 1943
DpnI GATC 8 cut(s) 26, 1070, 1153, 1395, 1473, 1747, 1878, 2323
DpnII GATC 8 cut(s) 24, 1068, 1151, 1393, 1471, 1745, 1876, 2321
DrdI GACNNNNNNGTC 2 cut(s) 1289, 1834
DriI GACNNNNNGTC 1 cut(s) 2341
DseDI GACNNNNNNGTC 2 cut(s) 1289, 1834
Eam1104I CTCTTC 2 cut(s) 2477, 2581
Eam1105I GACNNNNNGTC 1 cut(s) 2341
EarI CTCTTC 2 cut(s) 2477, 2581
Ecl136II GAGCTC 1 cut(s) 1382
Eco130I CCWWGG 5 cut(s) 399, 1703, 1821, 1842, 2613
Eco147I AGGCCT 2 cut(s) 777, 2773
Eco24I GRGCYC 1 cut(s) 1384
Eco47I GGWCC 3 cut(s) 1639, 2353, 2621
Eco53kI GAGCTC 1 cut(s) 1382
Eco57I CTGAAG 6 cut(s) 581, 903, 931, 1762, 1970, 2325
EcoICRI GAGCTC 1 cut(s) 1382
EcoRI GAATTC 1 cut(s) 843
EcoRII CCWGG 3 cut(s) 436, 1832, 2070
EcoT14I CCWWGG 5 cut(s) 399, 1703, 1821, 1842, 2613
EcoT38I GRGCYC 1 cut(s) 1384
EgeI GGCGCC 1 cut(s) 1943
EheI GGCGCC 1 cut(s) 1943
ErhI CCWWGG 5 cut(s) 399, 1703, 1821, 1842, 2613
FalI AAGNNNNNCTT 2 cut(s) 1968, 2000
FaqI GGGAC 4 cut(s) 715, 1840, 1986, 2077
FauNDI CATATG 2 cut(s) 34, 553
FbaI TGATCA 2 cut(s) 24, 1471
FblI GTMKAC 4 cut(s) 72, 1052, 1838, 2061
FokI GGATG 6 cut(s) 1124, 1256, 1427, 1448, 2001, 2144
FriOI GRGCYC 1 cut(s) 1384
FspBI CTAG 6 cut(s) 870, 1025, 1425, 2297, 2444, 2741
GlaI GCGC 2 cut(s) 52, 1943
GsaI CCCAGC 1 cut(s) 1563
GsuI CTGGAG 1 cut(s) 2054
HaeII RGCGCY 2 cut(s) 54, 1945
HaeIII GGCC 4 cut(s) 398, 468, 777, 2773
HapII CCGG 5 cut(s) 504, 753, 1004, 1088, 1676
HhaI GCGC 2 cut(s) 53, 1944
Hin1I GRCGYC 1 cut(s) 1942
Hin6I GCGC 2 cut(s) 51, 1942
HinP1I GCGC 2 cut(s) 51, 1942
HincII GTYRAC 3 cut(s) 348, 1053, 2196
HindII GTYRAC 3 cut(s) 348, 1053, 2196
HindIII AAGCTT 1 cut(s) 2228
HinfI GANTC 9 cut(s) 618, 642, 663, 991, 1000, 1335, 1574, 2103, 2590
HpaII CCGG 5 cut(s) 504, 753, 1004, 1088, 1676
HphI GGTGA 5 cut(s) 34, 1634, 2140, 2345, 2504
Hpy166II GTNNAC 8 cut(s) 73, 348, 794, 1053, 1839, 2062, 2196, 2311
Hpy188I TCNGA 7 cut(s) 286, 600, 1127, 1398, 1447, 1529, 2083
Hpy8I GTNNAC 8 cut(s) 73, 348, 794, 1053, 1839, 2062, 2196, 2311
Hpy99I CGWCG 1 cut(s) 677
HpyCH4III ACNGT 7 cut(s) 544, 604, 863, 1344, 1443, 2039, 2389
HpyCH4IV ACGT 2 cut(s) 672, 2237
HpyF3I CTNAG 5 cut(s) 14, 86, 779, 1388, 2625
HpySE526I ACGT 2 cut(s) 672, 2237
Hsp92I GRCGYC 1 cut(s) 1942
HspAI GCGC 2 cut(s) 51, 1942
KasI GGCGCC 1 cut(s) 1941
Kpn2I TCCGGA 1 cut(s) 1675
KpnI GGTACC 1 cut(s) 1812
Ksp22I TGATCA 2 cut(s) 24, 1471
Kzo9I GATC 8 cut(s) 24, 1068, 1151, 1393, 1471, 1745, 1876, 2321
LmnI GCTCC 5 cut(s) 439, 1232, 1678, 2454, 2681
Lsp1109I GCAGC 9 cut(s) 109, 391, 817, 1255, 1271, 1372, 1660, 2291, 2449
LweI GCATC 6 cut(s) 277, 399, 1426, 1487, 1979, 2770
MaeI CTAG 6 cut(s) 870, 1025, 1425, 2297, 2444, 2741
MaeII ACGT 2 cut(s) 672, 2237
MaeIII GTNAC 6 cut(s) 604, 712, 906, 950, 1296, 2333
MalI GATC 8 cut(s) 26, 1070, 1153, 1395, 1473, 1747, 1878, 2323
MboI GATC 8 cut(s) 24, 1068, 1151, 1393, 1471, 1745, 1876, 2321
MfeI CAATTG 2 cut(s) 1467, 2528
MflI RGATCY 2 cut(s) 1151, 1393
MhlI GDGCHC 4 cut(s) 796, 1384, 1744, 1850
Mly113I GGCGCC 1 cut(s) 1942
MlyI GAGTC 1 cut(s) 2112
MmeI TCCRAC 4 cut(s) 94, 125, 1363, 2185
MroI TCCGGA 1 cut(s) 1675
MroXI GAANNNNTTC 1 cut(s) 1182
MslI CAYNNNNRTG 3 cut(s) 385, 1802, 1966
MspCI CTTAAG 1 cut(s) 995
MspI CCGG 5 cut(s) 504, 753, 1004, 1088, 1676
MspR9I CCNGG 4 cut(s) 438, 1088, 1834, 2072
MunI CAATTG 2 cut(s) 1467, 2528
Mva1269I GAATGC 1 cut(s) 1963
MvaI CCWGG 3 cut(s) 438, 1834, 2072
NarI GGCGCC 1 cut(s) 1942
NciI CCSGG 1 cut(s) 1088
NcoI CCATGG 2 cut(s) 1821, 1842
NdeI CATATG 2 cut(s) 34, 553
NdeII GATC 8 cut(s) 24, 1068, 1151, 1393, 1471, 1745, 1876, 2321
NheI GCTAGC 1 cut(s) 2296
NlaIV GGNNCC 4 cut(s) 1179, 1395, 1810, 1943
NmuCI GTSAC 2 cut(s) 906, 2333
NspI RCATGY 4 cut(s) 346, 743, 914, 1121
OliI CACNNNNGTG 1 cut(s) 1966
PaeI GCATGC 1 cut(s) 1121
PceI AGGCCT 2 cut(s) 777, 2773
PciI ACATGT 2 cut(s) 342, 910
PctI GAATGC 1 cut(s) 1963
PdmI GAANNNNTTC 1 cut(s) 1182
PfeI GAWTC 8 cut(s) 618, 642, 663, 991, 1000, 1335, 1574, 2590
PfoI TCCNGGA 1 cut(s) 2070
PleI GAGTC 1 cut(s) 2111
PluTI GGCGCC 1 cut(s) 1945
PpsI GAGTC 1 cut(s) 2111
PscI ACATGT 2 cut(s) 342, 910
PshBI ATTAAT 1 cut(s) 2028
Psp124BI GAGCTC 1 cut(s) 1384
Psp6I CCWGG 3 cut(s) 436, 1832, 2070
PspFI CCCAGC 1 cut(s) 1559
PspGI CCWGG 3 cut(s) 436, 1832, 2070
PspN4I GGNNCC 4 cut(s) 1179, 1395, 1810, 1943
PspPI GGNCC 4 cut(s) 466, 1639, 2353, 2621
PsrI GAACNNNNNNTAC 2 cut(s) 2301, 2333
PsuI RGATCY 2 cut(s) 1151, 1393
RsaI GTAC 4 cut(s) 1753, 1786, 1810, 2019
RsaNI GTAC 4 cut(s) 1752, 1785, 1809, 2018
RseI CAYNNNNRTG 3 cut(s) 385, 1802, 1966
SacI GAGCTC 1 cut(s) 1384
SalI GTCGAC 1 cut(s) 1051
Sau3AI GATC 8 cut(s) 24, 1068, 1151, 1393, 1471, 1745, 1876, 2321
Sau96I GGNCC 4 cut(s) 466, 1639, 2353, 2621
ScaI AGTACT 1 cut(s) 1753
SchI GAGTC 1 cut(s) 2112
ScrFI CCNGG 4 cut(s) 438, 1088, 1834, 2072
SduI GDGCHC 4 cut(s) 796, 1384, 1744, 1850
SfaNI GCATC 6 cut(s) 277, 399, 1426, 1487, 1979, 2770
SfcI CTRYAG 1 cut(s) 2700
SfoI GGCGCC 1 cut(s) 1943
SinI GGWCC 3 cut(s) 1639, 2353, 2621
SmiMI CAYNNNNRTG 3 cut(s) 385, 1802, 1966
SmlI CTYRAG 2 cut(s) 995, 1317
SmoI CTYRAG 2 cut(s) 995, 1317
SpeI ACTAGT 2 cut(s) 1424, 2443
SphI GCATGC 1 cut(s) 1121
SseBI AGGCCT 2 cut(s) 777, 2773
SsiI CCGC 2 cut(s) 156, 2696
SspDI GGCGCC 1 cut(s) 1941
SspMI CTAG 6 cut(s) 870, 1025, 1425, 2297, 2444, 2741
SstI GAGCTC 1 cut(s) 1384
StuI AGGCCT 2 cut(s) 777, 2773
StyD4I CCNGG 4 cut(s) 436, 1086, 1832, 2070
StyI CCWWGG 5 cut(s) 399, 1703, 1821, 1842, 2613
TaaI ACNGT 7 cut(s) 544, 604, 863, 1344, 1443, 2039, 2389
TaiI ACGT 2 cut(s) 675, 2240
TaqI TCGA 3 cut(s) 1052, 1071, 2320
TatI WGTACW 2 cut(s) 1751, 2017
TauI GCSGC 1 cut(s) 2699
TfiI GAWTC 8 cut(s) 618, 642, 663, 991, 1000, 1335, 1574, 2590
TscAI CASTG 5 cut(s) 52, 303, 1786, 2308, 2439
TseFI GTSAC 2 cut(s) 906, 2333
TseI GCWGC 9 cut(s) 122, 404, 830, 1259, 1268, 1360, 1648, 2279, 2437
Tsp45I GTSAC 2 cut(s) 906, 2333
TspRI CASTG 5 cut(s) 52, 303, 1786, 2308, 2439
Vha464I CTTAAG 1 cut(s) 995
VneI GTGCAC 1 cut(s) 792
VpaK11BI GGWCC 3 cut(s) 1639, 2353, 2621
VspI ATTAAT 1 cut(s) 2028
XapI RAATTY 2 cut(s) 802, 843
XceI RCATGY 4 cut(s) 346, 743, 914, 1121
XcmI CCANNNNNNNNNTGG 2 cut(s) 1346, 1840
XmiI GTMKAC 4 cut(s) 72, 1052, 1838, 2061
XmnI GAANNNNTTC 1 cut(s) 1182
XspI CTAG 6 cut(s) 870, 1025, 1425, 2297, 2444, 2741
ZrmI AGTACT 1 cut(s) 1753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.