FvH4_6g49750

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000317
Physical Location & Seq
Forward (+)
37193726 .. 37200029
6304 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49750.t2

Sequence Viewer

Length: 3795 bp
ATGAGCGGGGCAATGTGTTCGATGAAATGTCTTGAAGAAGTGACAGGTAAGCAAATCGGTGTGACAGAGAACAACTTCTTCATGAGAAAAATGAGTAGAAGTGCAGACAAACGCAATAATATTGACATTACGAAGAACAAAATTGGGTCACTTGGCTCAATTTTCATACATGTAGATGCTATCGATAAGTTCTTGATGACTCTCGGGTTCCTTGGAGCTGTAGGTGATGGACTCTCTACTCGGATGTTGATTGTTTTTAATAGTGGTTTGATGAACAATATGGGAAGAGGTGGAGTCTTTGATGAGAAAAAAATGATTCCCTTCTTCTACTTGGCCCTCGCATCAATGCTTACTTGTTTCTTAGAGGGGTTTTGTTGGACAAGAACTGGGGAGAGACAAGCTACAAAAATGAGAAGAAACTATTTGAAAGCGGTGTTACGCCAAGAGGTAGCTTACTTAGATTCGCATCAAACAAGCGCCTCTGAGGTTGTAATAAGCATGTCAAATGACATTCAGATCATTCAAGATGTTCTCAGTGACAAGGTGCCAGACTTTGTGAATAAAGTCTCCCTTTTTGTTACAAGTTACGTGATAGCATTTGTGTTGATGTGGAAACTGGCTTTGGTTGGACTCCCCTTTCTGTTGCTTCTGGTACTTCCTGGTTGGATTTGTGGGAGAAACTTAACAAGAATATCAGGGAAGAGAAGACAAGAACACATTAAGACCGGGACAATAGCAGAACAGGCAATATCATCTATTAGAACAGTTTATGCATATGTTGGAGAGAACAAAACTATAACACAATTTTCTGCAGCCATACATGGGAGTACAAAGCTTGGTTTGAAGCAAGGCTTGGTTAAGGGGTTGGCAATTGGTAGCACCTACACTGTCTTTGCCATTTGGGCTGTCATGTCTTACTTGGGTAGCAGAATGGTTATATACCATGGTGCTCTAGGAGGGACTGTTTTTGCTGTTGGTGTTTCCATAATCAATGGAGGAATGGCAATGGGTTATGCTTTATCAAACTTGAAGTACTTTGCAGATGCATGCTCAGCTGGAGAGAATATCATGAAGGTTATCAATCGAGTTCCTGAAATTGATTCAGAAAACATGGAAGGCACAGTTCTGGACAATGTCTCAGGTGAAGTCCAGTTTGATCATCTCAAGTTTGCGTATCCATCAAGGCCTGAGAGCATTGTTCTGAACAACTTTTCTCTAACCGTACCAGCCGGAAATACTGTTGCCTTAGTCGGCTCAAGTGGATCAGGGAAATCAACAGCGACCTTACTGTTGCAAAGATTTTATAACCCTCTTGAGGGACATATTCTACTAGATGGGTTTGCCATTGACAAGTTACAGCTTAAGTGGCTCAGGTCTATAATGGCATCTGTAAGCCAAGAGCCTTCATTGTTCTCAACCACCATCAAGGAGAATATACTATTTGGCAAGGAAGATGGCACAATGGAGGAAGTAGTTGAGGCTGCCATAGCTAGCAATGCTCATAATTTCATATCTCAGTTGCCGAATGGGTATGACACCCAGGTTGGTGAGAGAGGCGTTCAAGTATCAGGTGGACAGAAGCAAAGAATAGCAATTGCGAGAGCACTTATAAAGAAACCAAAAATCCTTCTCCTTGATGAGGCCACCAGTGCATTAGACTCAGAGTCAGAAGGACTAGTTCAAGAAGCCCTCCATAGAGCAGCCACAGGAAGAACCACCTTAGTCATTGCTCACCGCTTATCCACCATTCAGAAGGCTGATGTTATTGCTGTTATGCAAAATGGTTCTGTCATGGAACTCGGTTCACATGATGAACTAATTCAACAGACAAATGGAGTTTACGCCTCGTTTGTCTGCCTTCAACAAACACCACAAAAGGAGACACCAGAAGATCAAGGTCCTTCATCATCTTTGGTCAACTTGTACGATAGTACTAGTACTTGGCACCTGGACTCAACCTCCCAGCTTGTTGCATCTGATAGTACTAGTACTACTACTGCTCAAGAATCTAGAAGCAACCTTTCCAAGCAGAAGTCATCATATTGGAGATTGTTATCTATGAATATTCCAGAGTGGAAGCAAGCAGTATTAGCTTGGTTATGTGCGATTTTTTTTGGAGCTGTTGAACCTCTATATGGATTCACCATGGGGACTACATTATCCATATATTTCTTGACAAATCCGGAGGAGATTAAGGCGAAAATCACAACTCTCGCTTTCTGCTTTTTCGGGTTGTCTGTGATCGCGTTACTGATTAATCTCCTGGAACACTATAGTTTTGCATACATTGGGGAGCATTTGAGCAATCGGATTAGAGAAATGATGCTCACCAAGATACTTAGTTTCGAAGTTGGCTGGTTCGACGATGATAGAAATTCTAGTGGTGCCATTTGCTCTAAACTCACCAAAGATGCTGAACAGGTCAGATCTTTAGTTGGTGACAGAATGTGCCTTCTTATACAAACCATCTCAGCTGTGACTATAGCTTGGACAATGGGCCTAATAATTGCATGGAGGCTTGCCGTAGTCGTCATTGCGACCCAACCCATAATCATTATGGGCCTCTATACTCGGCGTGTCCTGCTCAGCAGAATGTCCAGTAAAGCAGTCAAAAGCCAAGAGGAAAGTTGCAAGCTTGCAGCTGAAGCTATCTACAACCTCAGGACCATCACTTCCTTCTCAGCTCAGAGCAGGATTCTCAAAATGCTAGAAAAGGTCCAAGAAGGCCCACATAGAGAAAGCCTGCGGCAATCATGGTTCGCCGGTATTGGCCTCGGGTTTTCAATGAGCACTTCAATCCTCATTGTAGGTTTAAGCTATTGGTATGGCAGCAGGCTTGTCTCCCAAGACTACCTCACACCAAGAGCAGTGTTTGAGACCATCCTCATTCTGCTAACCACCGGTCGGGTCATAGCAGATGCCGGAAGCATGACATCGGACCTGGCCCATGGCTGGGATGCAATTGGGTCAATATTTGGCATCTTGGACCGAACCACAAGAATAGAACCCCAAGTTCCAAAAGACTCCCAGGTTGAAAAACTAATGGGAGAGGTCCATTTTCTTGACGTGTACTTTGCATACCCAACAAGGCCCAATGTGATGATCTTCCAAGGCTTCTCAATGAACATTGAAGCAGGAAAGTCCACGGCGTTGGTGGGCCAAAGCGGGTCGGGTAAATCAACCGTTATCGGACTAATTGAGAGATTTTATGATCCGATCAGGGGGGTGGTGGAAATCGACGGTCGTGATATAAAGTCTTACAACCTAAGGTCATTGAGGAAACATATGGCATTGGTAAGCCAAGAACCTACATTGTTTGCTGGTACCATAAGAGAGAACATAGTATTTGGAGCGTCGGAAAACATGGATGAAACTATGGTCATTGAGGCAGCAAGGGCAGCCAATGCTCATGAGTTCATCAGTGCGTTAAAGGACGGGTACGACACGTCGTGTGGCGATAGAGGATTGCAACTCTCTGGGGGTCAGAAGCAGCGCATTGCTATAGCAAGAGCTATACTGAGAAACCCTGCAGTGTTGTTACTTGACGAGGCAACGAGCGCGCTTGATAGCCAATCGGAGAAGGTGGTTCAAGAGGCATTGGAGCATGTCATGGTGGGGAGAACCAGTGTGGTAGTGGCGCACAGGTTGAGTACCATACAAAACTGTGACCACATTACGGTGCTTGATAAAGGAAAGGTAGTGGAGAAGGGGTCTCACTCTTCTCTTTTGGCTAAGGGACCTTCAGGAGCTTATTACTCCTTAGTCAATTTCACAAGCAGGAGTACACAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1265

Amino Acids

138.63

Weight (kDa)

8.18

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 58 - 312 7.6e-40 ABC transporter transmembrane region
ABC_tran PF00005 388 - 537 1.2e-31 ABC transporter
ABC_membrane PF00664 685 - 952 3.5e-42 ABC transporter transmembrane region
ABC_tran PF00005 1024 - 1173 8.3e-33 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1305, 1610
Acc65I GGTACC 1 cut(s) 3323
AccB1I GGYRCC 4 cut(s) 544, 1944, 2384, 3323
AccBSI CCGCTC 1 cut(s) 6
AccII CGCG 2 cut(s) 2246, 3560
AccIII TCCGGA 1 cut(s) 2182
AciI CCGC 5 cut(s) 6, 431, 1735, 2746, 3165
AclWI GGATC 2 cut(s) 1270, 3206
AcsI RAATTY 1 cut(s) 2374
AcuI CTGAAG 2 cut(s) 2664, 3726
AdeI CACNNNGTG 1 cut(s) 3450
AflII CTTAAG 1 cut(s) 1361
AflIII ACRYGT 3 cut(s) 169, 3066, 3444
AgeI ACCGGT 1 cut(s) 2900
AhdI GACNNNNNGTC 1 cut(s) 1663
AhlI ACTAGT 3 cut(s) 1675, 1934, 1985
AjiI CACGTC 2 cut(s) 3067, 3447
AjnI CCWGG 6 cut(s) 658, 1539, 1947, 2262, 2940, 3027
AjuI GAANNNNNNNTTGG 4 cut(s) 605, 637, 836, 868
Alw21I GWGCWC 3 cut(s) 952, 1606, 2792
Alw26I GTCTC 7 cut(s) 388, 571, 1141, 1874, 2845, 2870, 3717
AlwI GGATC 2 cut(s) 1270, 3206
Ama87I CYCGRG 2 cut(s) 203, 2774
Aor13HI TCCGGA 1 cut(s) 2182
ApeKI GCWGC 8 cut(s) 812, 1481, 1700, 2639, 2829, 3389, 3398, 3490
ApoI RAATTY 1 cut(s) 2374
ArsI GACNNNNNNTTYG 2 cut(s) 3056, 3088
AseI ATTAAT 1 cut(s) 2256
AsiGI ACCGGT 1 cut(s) 2900
Asp700I GAANNNNTTC 2 cut(s) 74, 1818
Asp718I GGTACC 1 cut(s) 3323
AspLEI GCGC 5 cut(s) 479, 3495, 3560, 3562, 3640
AsuC2I CCSGG 1 cut(s) 727
AsuHPI GGTGA 8 cut(s) 236, 1154, 1559, 1724, 2134, 2320, 2395, 2450
AsuII TTCGAA 1 cut(s) 2346
AsuNHI GCTAGC 1 cut(s) 1490
AvaI CYCGRG 2 cut(s) 203, 2774
AvaII GGWCC 7 cut(s) 1898, 2664, 2716, 2938, 2986, 3052, 3737
AxyI CCTNAGG 2 cut(s) 2660, 3266
BanI GGYRCC 4 cut(s) 544, 1944, 2384, 3323
BbsI GAAGAC 1 cut(s) 712
Bbv12I GWGCWC 3 cut(s) 952, 1606, 2792
BbvI GCAGC 8 cut(s) 824, 1468, 1712, 2651, 2841, 3401, 3410, 3502
BccI CCATC 8 cut(s) 221, 1186, 1328, 1430, 1448, 2474, 2675, 2888
BceAI ACGGC 2 cut(s) 2507, 3162
BcgI CGANNNNNNTGC 1 cut(s) 34
BciT130I CCWGG 6 cut(s) 660, 1541, 1949, 2264, 2942, 3029
BciVI GTATCC 1 cut(s) 1185
BclI TGATCA 1 cut(s) 1156
BcnI CCSGG 1 cut(s) 727
BcoDI GTCTC 7 cut(s) 388, 571, 1141, 1874, 2845, 2870, 3717
BcuI ACTAGT 3 cut(s) 1675, 1934, 1985
BfaI CTAG 9 cut(s) 953, 1331, 1491, 1676, 1935, 1986, 2010, 2379, 2708
BfmI CTRYAG 6 cut(s) 219, 810, 2272, 2481, 3501, 3528
BfoI RGCGCY 1 cut(s) 480
BfrI CTTAAG 1 cut(s) 1361
BfuI GTATCC 1 cut(s) 1185
BglI GCCNNNNNGGC 1 cut(s) 902
BglII AGATCT 1 cut(s) 2426
BisI GCNGC 9 cut(s) 813, 1482, 1701, 2640, 2747, 2830, 3390, 3399, 3491
BlpI GCTNAGC 2 cut(s) 1051, 2585
BlsI GCNGC 9 cut(s) 814, 1483, 1702, 2641, 2748, 2831, 3391, 3400, 3492
BmcAI AGTACT 5 cut(s) 1034, 1933, 1939, 1984, 1990
Bme1390I CCNGG 7 cut(s) 660, 727, 1541, 1949, 2264, 2942, 3029
Bme18I GGWCC 7 cut(s) 1898, 2664, 2716, 2938, 2986, 3052, 3737
BmeRI GACNNNNNGTC 1 cut(s) 1663
BmeT110I CYCGRG 2 cut(s) 203, 2774
BmgBI CACGTC 2 cut(s) 3067, 3447
BmiI GGNNCC 6 cut(s) 209, 546, 1946, 2386, 3325, 3738
BmrFI CCNGG 7 cut(s) 660, 727, 1541, 1949, 2264, 2942, 3029
BmrI ACTGGG 1 cut(s) 396
BmtI GCTAGC 1 cut(s) 1494
BmuI ACTGGG 1 cut(s) 396
BpiI GAAGAC 1 cut(s) 712
BpmI CTGGAG 1 cut(s) 1077
Bpu10I CCTNAGC 2 cut(s) 1370, 3732
Bpu1102I GCTNAGC 2 cut(s) 1051, 2585
Bpu14I TTCGAA 1 cut(s) 2346
BpuEI CTTGAG 4 cut(s) 1148, 1240, 1334, 1986
BpuMI CCSGG 1 cut(s) 727
Bsa29I ATCGAT 1 cut(s) 183
BsaAI YACGTR 1 cut(s) 589
BsaBI GATNNNNATC 2 cut(s) 465, 2053
BsaI GGTCTC 2 cut(s) 2870, 3717
BsaJI CCNNGG 9 cut(s) 211, 943, 1539, 2145, 2773, 2947, 3027, 3109, 3144
BsaWI WCCGGW 2 cut(s) 2182, 2900
BsaXI ACNNNNNCTCC 8 cut(s) 948, 978, 1943, 1973, 3610, 3640, 3695, 3725
Bse118I RCCGGY 2 cut(s) 2762, 2900
Bse1I ACTGG 6 cut(s) 391, 621, 1150, 1647, 2598, 3624
Bse21I CCTNAGG 2 cut(s) 2660, 3266
Bse3DI GCAATG 6 cut(s) 18, 1011, 1501, 1725, 2532, 3495
Bse8I GATNNNNATC 2 cut(s) 465, 2053
BseAI TCCGGA 1 cut(s) 2182
BseBI CCWGG 6 cut(s) 660, 1541, 1949, 2264, 2942, 3029
BseCI ATCGAT 1 cut(s) 183
BseDI CCNNGG 9 cut(s) 211, 943, 1539, 2145, 2773, 2947, 3027, 3109, 3144
BseGI GGATG 4 cut(s) 249, 2880, 2962, 3373
BseJI GATNNNNATC 2 cut(s) 465, 2053
BseMI GCAATG 6 cut(s) 18, 1011, 1501, 1725, 2532, 3495
BseNI ACTGG 6 cut(s) 391, 621, 1150, 1647, 2598, 3624
BsePI GCGCGC 1 cut(s) 3558
BseRI GAGGAG 1 cut(s) 2201
BseXI GCAGC 8 cut(s) 824, 1468, 1712, 2651, 2841, 3401, 3410, 3502
BseYI CCCAGC 2 cut(s) 1962, 2952
BsgI GTGCAG 1 cut(s) 123
Bsh1236I CGCG 2 cut(s) 2246, 3560
Bsh1285I CGRYCG 2 cut(s) 2905, 3244
BshNI GGYRCC 4 cut(s) 544, 1944, 2384, 3323
BshTI ACCGGT 1 cut(s) 2900
BshVI ATCGAT 1 cut(s) 183
BsiEI CGRYCG 2 cut(s) 2905, 3244
BsiHKAI GWGCWC 3 cut(s) 952, 1606, 2792
BsiHKCI CYCGRG 2 cut(s) 203, 2774
BsiSI CCGG 6 cut(s) 726, 1230, 2183, 2763, 2901, 2922
BslFI GGGAC 5 cut(s) 742, 973, 1332, 2164, 3750
BsmAI GTCTC 7 cut(s) 388, 571, 1141, 1874, 2845, 2870, 3717
BsmFI GGGAC 5 cut(s) 742, 973, 1332, 2164, 3750
Bso31I GGTCTC 2 cut(s) 2870, 3717
BsoBI CYCGRG 2 cut(s) 203, 2774
Bsp119I TTCGAA 1 cut(s) 2346
Bsp1286I GDGCHC 3 cut(s) 952, 1606, 2792
Bsp13I TCCGGA 1 cut(s) 2182
Bsp143I GATC 9 cut(s) 516, 1156, 1262, 1891, 2241, 2426, 3102, 3211, 3216
Bsp1720I GCTNAGC 2 cut(s) 1051, 2585
Bsp19I CCATGG 3 cut(s) 943, 2145, 2947
BspACI CCGC 5 cut(s) 6, 431, 1735, 2746, 3165
BspDI ATCGAT 1 cut(s) 183
BspEI TCCGGA 1 cut(s) 2182
BspFNI CGCG 2 cut(s) 2246, 3560
BspHI TCATGA 3 cut(s) 81, 1068, 3409
BspLI GGNNCC 6 cut(s) 209, 546, 1946, 2386, 3325, 3738
BspMAI CTGCAG 2 cut(s) 814, 3532
BspOI GCTAGC 1 cut(s) 1494
BspPI GGATC 2 cut(s) 1270, 3206
BspT104I TTCGAA 1 cut(s) 2346
BspT107I GGYRCC 4 cut(s) 544, 1944, 2384, 3323
BspTI CTTAAG 1 cut(s) 1361
BspTNI GGTCTC 2 cut(s) 2870, 3717
BsrBI CCGCTC 1 cut(s) 6
BsrDI GCAATG 6 cut(s) 18, 1011, 1501, 1725, 2532, 3495
BsrFI RCCGGY 2 cut(s) 2762, 2900
BsrI ACTGG 6 cut(s) 391, 621, 1150, 1647, 2598, 3624
BssAI RCCGGY 2 cut(s) 2762, 2900
BssECI CCNNGG 9 cut(s) 211, 943, 1539, 2145, 2773, 2947, 3027, 3109, 3144
BssHII GCGCGC 1 cut(s) 3558
BssMI GATC 9 cut(s) 516, 1156, 1262, 1891, 2241, 2426, 3102, 3211, 3216
BssT1I CCWWGG 5 cut(s) 211, 943, 2145, 2947, 3109
Bst2UI CCWGG 6 cut(s) 660, 1541, 1949, 2264, 2942, 3029
Bst6I CTCTTC 3 cut(s) 280, 695, 3724
BstAFI CTTAAG 1 cut(s) 1361
BstAPI GCANNNNNTGC 1 cut(s) 3404
BstBAI YACGTR 1 cut(s) 589
BstBI TTCGAA 1 cut(s) 2346
BstC8I GCNNGC 9 cut(s) 1048, 1492, 2082, 2520, 2633, 2637, 2744, 2834, 3560
BstDSI CCRYGG 4 cut(s) 943, 2145, 2947, 3144
BstENI CCTNNNNNAGG 1 cut(s) 1637
BstF5I GGATG 4 cut(s) 249, 2880, 2962, 3373
BstFNI CGCG 2 cut(s) 2246, 3560
BstH2I RGCGCY 1 cut(s) 480
BstHHI GCGC 5 cut(s) 479, 3495, 3560, 3562, 3640
BstKTI GATC 9 cut(s) 519, 1159, 1265, 1894, 2244, 2429, 3105, 3214, 3219
BstMAI GTCTC 7 cut(s) 388, 571, 1141, 1874, 2845, 2870, 3717
BstMBI GATC 9 cut(s) 516, 1156, 1262, 1891, 2241, 2426, 3102, 3211, 3216
BstMCI CGRYCG 2 cut(s) 2905, 3244
BstNI CCWGG 6 cut(s) 660, 1541, 1949, 2264, 2942, 3029
BstNSI RCATGY 4 cut(s) 173, 502, 1050, 3608
BstSCI CCNGG 7 cut(s) 658, 725, 1539, 1947, 2262, 2940, 3027
BstSFI CTRYAG 6 cut(s) 219, 810, 2272, 2481, 3501, 3528
BstUI CGCG 2 cut(s) 2246, 3560
BstV1I GCAGC 8 cut(s) 824, 1468, 1712, 2651, 2841, 3401, 3410, 3502
BstV2I GAAGAC 1 cut(s) 712
BstX2I RGATCY 1 cut(s) 2426
BstXI CCANNNNNNTGG 1 cut(s) 3151
BstYI RGATCY 1 cut(s) 2426
Bsu15I ATCGAT 1 cut(s) 183
Bsu36I CCTNAGG 2 cut(s) 2660, 3266
BsuI GTATCC 1 cut(s) 1185
BsuTUI ATCGAT 1 cut(s) 183
BtgI CCRYGG 4 cut(s) 943, 2145, 2947, 3144
BtrI CACGTC 2 cut(s) 3067, 3447
BtsCI GGATG 4 cut(s) 249, 2880, 2962, 3373
BtsI GCAGTG 2 cut(s) 2874, 3537
BtsIMutI CAGTG 7 cut(s) 541, 885, 1654, 2874, 3427, 3537, 3631
Cac8I GCNNGC 9 cut(s) 1048, 1492, 2082, 2520, 2633, 2637, 2744, 2834, 3560
CciI TCATGA 3 cut(s) 81, 1068, 3409
CfoI GCGC 5 cut(s) 479, 3495, 3560, 3562, 3640
Cfr10I RCCGGY 2 cut(s) 2762, 2900
ClaI ATCGAT 1 cut(s) 183
CseI GACGC 1 cut(s) 3342
CspAI ACCGGT 1 cut(s) 2900
DpnI GATC 9 cut(s) 518, 1158, 1264, 1893, 2243, 2428, 3104, 3213, 3218
DpnII GATC 9 cut(s) 516, 1156, 1262, 1891, 2241, 2426, 3102, 3211, 3216
DraIII CACNNNGTG 1 cut(s) 3450
DriI GACNNNNNGTC 1 cut(s) 1663
Eam1104I CTCTTC 3 cut(s) 280, 695, 3724
Eam1105I GACNNNNNGTC 1 cut(s) 1663
EarI CTCTTC 3 cut(s) 280, 695, 3724
Eco130I CCWWGG 5 cut(s) 211, 943, 2145, 2947, 3109
Eco147I AGGCCT 1 cut(s) 1186
Eco31I GGTCTC 2 cut(s) 2870, 3717
Eco47I GGWCC 7 cut(s) 1898, 2664, 2716, 2938, 2986, 3052, 3737
Eco57I CTGAAG 2 cut(s) 2664, 3726
Eco81I CCTNAGG 2 cut(s) 2660, 3266
Eco88I CYCGRG 2 cut(s) 203, 2774
EcoNI CCTNNNNNAGG 1 cut(s) 1637
EcoO109I RGGNCCY 2 cut(s) 1898, 3737
EcoRII CCWGG 6 cut(s) 658, 1539, 1947, 2262, 2940, 3027
EcoT14I CCWWGG 5 cut(s) 211, 943, 2145, 2947, 3109
EcoT22I ATGCAT 2 cut(s) 775, 1048
ErhI CCWWGG 5 cut(s) 211, 943, 2145, 2947, 3109
FalI AAGNNNNNCTT 4 cut(s) 555, 587, 836, 868
FaqI GGGAC 5 cut(s) 742, 973, 1332, 2164, 3750
FauI CCCGC 1 cut(s) 3158
FauNDI CATATG 2 cut(s) 775, 3285
FbaI TGATCA 1 cut(s) 1156
Fnu4HI GCNGC 9 cut(s) 813, 1482, 1701, 2640, 2747, 2830, 3390, 3399, 3491
FokI GGATG 4 cut(s) 256, 2867, 2969, 3380
Fsp4HI GCNGC 9 cut(s) 813, 1482, 1701, 2640, 2747, 2830, 3390, 3399, 3491
FspBI CTAG 9 cut(s) 953, 1331, 1491, 1676, 1935, 1986, 2010, 2379, 2708
GlaI GCGC 5 cut(s) 478, 3494, 3559, 3561, 3639
GluI GCNGC 9 cut(s) 813, 1482, 1701, 2640, 2747, 2830, 3390, 3399, 3491
GsaI CCCAGC 2 cut(s) 1966, 2956
GsuI CTGGAG 1 cut(s) 1077
HaeII RGCGCY 1 cut(s) 480
HapII CCGG 6 cut(s) 726, 1230, 2183, 2763, 2901, 2922
HgaI GACGC 1 cut(s) 3342
HhaI GCGC 5 cut(s) 479, 3495, 3560, 3562, 3640
Hin6I GCGC 5 cut(s) 477, 3493, 3558, 3560, 3638
HinP1I GCGC 5 cut(s) 477, 3493, 3558, 3560, 3638
HincII GTYRAC 1 cut(s) 1918
HindII GTYRAC 1 cut(s) 1918
HindIII AAGCTT 2 cut(s) 833, 2633
HpaII CCGG 6 cut(s) 726, 1230, 2183, 2763, 2901, 2922
HphI GGTGA 8 cut(s) 236, 1154, 1559, 1724, 2134, 2320, 2395, 2450
Hpy166II GTNNAC 7 cut(s) 1574, 1805, 1840, 1918, 3070, 3144, 3785
Hpy8I GTNNAC 7 cut(s) 1574, 1805, 1840, 1918, 3070, 3144, 3785
Hpy99I CGWCG 4 cut(s) 2366, 3242, 3358, 3451
HpyCH4IV ACGT 3 cut(s) 588, 3066, 3446
HpySE526I ACGT 3 cut(s) 588, 3066, 3446
HspAI GCGC 5 cut(s) 477, 3493, 3558, 3560, 3638
Kpn2I TCCGGA 1 cut(s) 2182
KpnI GGTACC 1 cut(s) 3327
Ksp22I TGATCA 1 cut(s) 1156
Kzo9I GATC 9 cut(s) 516, 1156, 1262, 1891, 2241, 2426, 3102, 3211, 3216
LmnI GCTCC 6 cut(s) 215, 2117, 2293, 3350, 3601, 3746
Lsp1109I GCAGC 8 cut(s) 824, 1468, 1712, 2651, 2841, 3401, 3410, 3502
MaeI CTAG 9 cut(s) 953, 1331, 1491, 1676, 1935, 1986, 2010, 2379, 2708
MaeII ACGT 3 cut(s) 588, 3066, 3446
MalI GATC 9 cut(s) 518, 1158, 1264, 1893, 2243, 2428, 3104, 3213, 3218
MbiI CCGCTC 1 cut(s) 6
MboI GATC 9 cut(s) 516, 1156, 1262, 1891, 2241, 2426, 3102, 3211, 3216
MfeI CAATTG 3 cut(s) 870, 1593, 2961
MflI RGATCY 1 cut(s) 2426
MhlI GDGCHC 3 cut(s) 952, 1606, 2792
MlyI GAGTC 8 cut(s) 193, 225, 303, 624, 1652, 1673, 1946, 3017
MmeI TCCRAC 5 cut(s) 356, 607, 644, 760, 3336
Mph1103I ATGCAT 2 cut(s) 775, 1048
MroI TCCGGA 1 cut(s) 2182
MroXI GAANNNNTTC 2 cut(s) 74, 1818
MslI CAYNNNNRTG 2 cut(s) 174, 3677
MspA1I CMGCKG 3 cut(s) 1055, 2474, 2642
MspCI CTTAAG 1 cut(s) 1361
MspI CCGG 6 cut(s) 726, 1230, 2183, 2763, 2901, 2922
MspR9I CCNGG 7 cut(s) 660, 727, 1541, 1949, 2264, 2942, 3029
MunI CAATTG 3 cut(s) 870, 1593, 2961
MvaI CCWGG 6 cut(s) 660, 1541, 1949, 2264, 2942, 3029
MvnI CGCG 2 cut(s) 2246, 3560
NciI CCSGG 1 cut(s) 727
NcoI CCATGG 3 cut(s) 943, 2145, 2947
NdeI CATATG 2 cut(s) 775, 3285
NdeII GATC 9 cut(s) 516, 1156, 1262, 1891, 2241, 2426, 3102, 3211, 3216
NheI GCTAGC 1 cut(s) 1490
NlaIV GGNNCC 6 cut(s) 209, 546, 1946, 2386, 3325, 3738
NmeAIII GCCGAG 1 cut(s) 2551
NmuCI GTSAC 7 cut(s) 40, 61, 147, 536, 2438, 2476, 3665
NsiI ATGCAT 2 cut(s) 775, 1048
NspI RCATGY 4 cut(s) 173, 502, 1050, 3608
NspV TTCGAA 1 cut(s) 2346
PaeI GCATGC 1 cut(s) 1050
PagI TCATGA 3 cut(s) 81, 1068, 3409
PauI GCGCGC 1 cut(s) 3558
PceI AGGCCT 1 cut(s) 1186
PciI ACATGT 1 cut(s) 169
PdmI GAANNNNTTC 2 cut(s) 74, 1818
PfeI GAWTC 6 cut(s) 316, 461, 1100, 2006, 2139, 2695
PflFI GACNNNGTC 1 cut(s) 1133
PfoI TCCNGGA 1 cut(s) 2262
PinAI ACCGGT 1 cut(s) 2900
PkrI GCNGC 9 cut(s) 814, 1483, 1702, 2641, 2748, 2831, 3391, 3400, 3492
PleI GAGTC 8 cut(s) 193, 225, 302, 624, 1652, 1672, 1946, 3017
PpsI GAGTC 8 cut(s) 193, 225, 302, 624, 1652, 1672, 1946, 3017
Ppu21I YACGTR 1 cut(s) 589
PpuMI RGGWCCY 2 cut(s) 1898, 3737
PscI ACATGT 1 cut(s) 169
PshBI ATTAAT 1 cut(s) 2256
PsiI TTATAA 2 cut(s) 1305, 1610
Psp5II RGGWCCY 2 cut(s) 1898, 3737
Psp6I CCWGG 6 cut(s) 658, 1539, 1947, 2262, 2940, 3027
PspFI CCCAGC 2 cut(s) 1962, 2952
PspGI CCWGG 6 cut(s) 658, 1539, 1947, 2262, 2940, 3027
PspN4I GGNNCC 6 cut(s) 209, 546, 1946, 2386, 3325, 3738
PspPPI RGGWCCY 2 cut(s) 1898, 3737
PstI CTGCAG 2 cut(s) 814, 3532
PsuI RGATCY 1 cut(s) 2426
PsyI GACNNNGTC 1 cut(s) 1133
PteI GCGCGC 1 cut(s) 3558
PvuII CAGCTG 3 cut(s) 1055, 2474, 2642
RseI CAYNNNNRTG 2 cut(s) 174, 3677
SatI GCNGC 9 cut(s) 813, 1482, 1701, 2640, 2747, 2830, 3390, 3399, 3491
Sau3AI GATC 9 cut(s) 516, 1156, 1262, 1891, 2241, 2426, 3102, 3211, 3216
ScaI AGTACT 5 cut(s) 1034, 1933, 1939, 1984, 1990
SchI GAGTC 8 cut(s) 193, 225, 303, 624, 1652, 1673, 1946, 3017
ScrFI CCNGG 7 cut(s) 660, 727, 1541, 1949, 2264, 2942, 3029
SduI GDGCHC 3 cut(s) 952, 1606, 2792
SfcI CTRYAG 6 cut(s) 219, 810, 2272, 2481, 3501, 3528
SfuI TTCGAA 1 cut(s) 2346
SinI GGWCC 7 cut(s) 1898, 2664, 2716, 2938, 2986, 3052, 3737
SmiMI CAYNNNNRTG 2 cut(s) 174, 3677
SmlI CTYRAG 5 cut(s) 1163, 1255, 1313, 1361, 2001
SmoI CTYRAG 5 cut(s) 1163, 1255, 1313, 1361, 2001
SpeI ACTAGT 3 cut(s) 1675, 1934, 1985
SphI GCATGC 1 cut(s) 1050
SseBI AGGCCT 1 cut(s) 1186
SsiI CCGC 5 cut(s) 6, 431, 1735, 2746, 3165
SspI AATATT 3 cut(s) 121, 2065, 2973
SspMI CTAG 9 cut(s) 953, 1331, 1491, 1676, 1935, 1986, 2010, 2379, 2708
StuI AGGCCT 1 cut(s) 1186
StyD4I CCNGG 7 cut(s) 658, 725, 1539, 1947, 2262, 2940, 3027
StyI CCWWGG 5 cut(s) 211, 943, 2145, 2947, 3109
TaiI ACGT 3 cut(s) 591, 3069, 3449
TaqI TCGA 6 cut(s) 20, 183, 1084, 2346, 2361, 3237
TaqII GACCGA 1 cut(s) 3003
TatI WGTACW 8 cut(s) 827, 1032, 1931, 1937, 1982, 1988, 3069, 3782
TauI GCSGC 1 cut(s) 2749
TfiI GAWTC 6 cut(s) 316, 461, 1100, 2006, 2139, 2695
TscAI CASTG 7 cut(s) 541, 892, 1654, 2874, 3427, 3537, 3631
TseFI GTSAC 7 cut(s) 40, 61, 147, 536, 2438, 2476, 3665
TseI GCWGC 8 cut(s) 812, 1481, 1700, 2639, 2829, 3389, 3398, 3490
Tsp45I GTSAC 7 cut(s) 40, 61, 147, 536, 2438, 2476, 3665
TspRI CASTG 7 cut(s) 541, 892, 1654, 2874, 3427, 3537, 3631
Tth111I GACNNNGTC 1 cut(s) 1133
Vha464I CTTAAG 1 cut(s) 1361
VpaK11BI GGWCC 7 cut(s) 1898, 2664, 2716, 2938, 2986, 3052, 3737
VspI ATTAAT 1 cut(s) 2256
XagI CCTNNNNNAGG 1 cut(s) 1637
XapI RAATTY 1 cut(s) 2374
XbaI TCTAGA 1 cut(s) 2009
XceI RCATGY 4 cut(s) 173, 502, 1050, 3608
XcmI CCANNNNNNNNNTGG 3 cut(s) 2554, 3151, 3631
XmnI GAANNNNTTC 2 cut(s) 74, 1818
XspI CTAG 9 cut(s) 953, 1331, 1491, 1676, 1935, 1986, 2010, 2379, 2708
ZrmI AGTACT 5 cut(s) 1034, 1933, 1939, 1984, 1990
Zsp2I ATGCAT 2 cut(s) 775, 1048
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.