Rroxscaffold_2G00081790

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000317
Physical Location & Seq
Reverse (-)
4781864 .. 4794267
12404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00081790.1

Sequence Viewer

Length: 7242 bp
ATGGGACACCTTCTCCATCCCAAGAGCGATCGGCGGTTTCCGGCGCCAATCAACCACTCCCGGTGGAGCTTGACTCGCCAGAAAGCTGATTGGCTTGCGCGGTCCGCTAAAATGGGCATTTGCTATGATGATTGGATGAATCACCCACGGCCTTTTTGCTGCATAATTTCACTGTGGTTGGAATCGTCTCGGCAGAGGTTCCAATCATATGCAGGTTCCGCATCAGATCGAACTGAAAAGAAAGTGGAAAGATCACCATATGGGATTTGGGACAGTGGACACCAAATGGATGCTAATGCAGGGGCCACATCATATGCTTTGCTCGTTTTTATAAGCGCATTAAATGCAGTGGATAAGTGGCTGATGACTCTGGGCTTGCTTGGGGCTGTTGGTGATGGATTGTCTGCACCGCTGGCTGTGTTTTTTGTTAGCCTTTACATCAATAAAATAGGCAGAGCTGGAGCATCTGATTTAGATGCACGTAATTTCCACAATTATAACGGACTATTATTTACTTTCCTCTACTTGGCTTGCGCGTCGTGGTTTGCTTGTTTCTTAGGGGTATTGCTGGACACAAACAGCGGAGAGACAAGCTACAAGATGAGGAGTAAATATATGAAAGCAGTGTTGCACCAAGACGTGGGTTACTTTGATTTGCATGTAACAAGCACCTCTGAGGTTCTAACGAGCATCTCAAATGATATTCAGATAATTCAAGATGTTCTCAGTCAAAAGGGCATGATTAAAGGTTTGGCCATCGGTAGCAGTACTGGCACAGCATTTGCCAATTGGGCTGTCATGTCTTATTATGGTAGCAGAAAGGTCATATCCCATGGTGCTCTAGGCGGGGCCATTTCAGCAGTTGGCCAGGAAATGGGTGCTGCTTTATCGAATTTGAAGTACATTGCAGAAGCATGTTCAGCTGGGGATCATATCCTGGAGATTATTAATCGAGTTGCAGAGATTGATTTAGACAACATGGAAGGCGCAATTTTGGAGCATGTTACAAGCAAAGTTGAATTTAATCATGTGAAGTTTGCTTACCCCTCAAGACCTGAGAGCATCATCCTGAACAGATTCTGTCTAACCGTACCAGCAGGGAAAACTGTTGCGTTGGTGGGCTCAAGCGGATCAGGAAAATCCACAGTGATATCCCTCTTGCAAAGATTCTATGATGCACTTGAGGGAGAGATTCTCCTAAATGGAGTTTCTATTGATAAACTGCAGCTTAAGTGGCTAAGGTCACAAATGGCATCCGTAAGCCAAGAGCCTTCATTGTTCTCAACCACCATTAAAGATAACATACTTCTAGGCAAGGAGGATGGTACAAGAGAGGAAATAGTAGAGGCAGCCAAAGCCAGCAACACTCATGATTTTATATGTCAGTTGCCTCAAGGATACGATACCCAGGTTGGTGAGAGAGGCAGTCAAGTATCTGGCATACAAAAGCAGAGAATAGCTATTGCAAGAGCACTAATAAAGAAACCTCATATTCTTCTCCTTGATGAAGCCACAAGTGGATTAGACTCAGAGTCGGAAAGGCTTGTTCAAGAAGCCCTCCACAGGGCTGCCATGGGCAGAACTACCATTGTCATTGCACACCGCTTGTCCACAATTCGAAATGCTGATCGTATTGGTGTCATGCAAAATGGTTGTGTCATAGAAACCGGCTCACACGATGAACTGATTCAACACCAAAATGGACTGTACACTTCTTTTGTTCGTCTCCAACAAACAGAAACAGAAACCCCAGAAGATCAATTTCAATGTACTGGTGCTAGTACTACTACTCTTCCAGTAATGGTGAGCCCATTAAACTTGACCTCCCAGCTTGGTGGATCTGATAAGTGGAAACAAGCAATTTTGGGGTGTTTGAGTGCAATAATTTTTGGAGCAGTTCAACCCCTGTACGGATTCACCATGGATACCACATTATCAGTGCTTTTCTCAACAAATCATTATGAGATCAAAGAGAGAATCAGGATTCTTGCCTTGTGTTTTCTTGGGTTGTCCCTTTTTGCATTGCTCATAAATATCATCCAACACTACAATTTCACATACATGGGGGAGTATTTGACCAATCGGATTAAAGAAACGATGTTGTCAAAGATGCTCACTTTTGAAGTTGCATGGTTCGATGAGGTTCAAAATTCTAGCGGTGCCATTTGTGCTCAGCTCACCAAGGACGCTGAATTGGTGAGATCTTTAGCGGGTGACCGAATGGGTCTTCTTGTACAAACCATTTCTGCTGTAACTGTAGCATGGGCAATGGGTCTAATAATTGCATGGAGGCCTGGCATACTCATCATTGCCGTCCAACCCATAGTCATCCTCAGCCTCTATGCTAAGCGTGTCCTACTCAAAAGAATATCCATCAGAGCCACCAAAGCCCAAGAGGAAAGCTGTAAGCTTGCAGCTGAAGCTATCTACAACCACCGGACCGTTACTGCCTTCTCGGCAGAGAACAGGATTTTGAAAATGCTAGACAAGGCCCAAGAAACCCCACGTAGAGAAAACCTGCGACAATCGTGGTTTGCAGGTATCGGACTTGGGTTCGCCGAGAGCATTACAGTCATCAATTGGGGGCTGAGTTATTGGTATGGCGGCAGGCTTGTCCACCAAGGCTACCTTACTCCAAGATCAGTCTTTGAGACTATCCTCATTTTAGTAACTACCGGTCGGGTCATAGCAAATGCCGGAAGCATGACATTGGATCTTGCCATGGGCTTGGATGCAATCAGGTCCATTTTTAGAATCTTAGACCGGACCACAAGAATCGAACCCCGAGCTCCAGAAGAAGCCCAGGTAGAAAAGATAACAGGTCATGTCCAATTCCGTGATGTGTACTTTGCGTACCCAAATAGGCCCAATGTGATGGTCCTCCAAGGCTTCTCTATCCACATTGAAGCAGGAAAGTCAACAGCATTGGTCGGACAAAGTGGATCAGGTAAGTCAACAGTCATCGCATTAATCGAGAGGTTCCTTGATCCAAACCAAGGTGTAGTGGAAATAGACAGTCGAGATGTAAAATCATACCACCTTAGTGGATTAATCGACGGGTACAACACATTGTGTGGAGACAAAGGGGTGCAGCTATCTGGGGGACAAAAACAACGTATAGCAATAGCCAGGGCTATACTGAGAAAACCAGCAGTGTTAGTATTAGATGCAGCAACCAGCGCACTTGATCCGAGAAGAAAACTACCTCTGAGGTTGTTACAATGCACGTCAAATGACATTCAATTATTCAAGATGTTCCTGTCGAATAATGTCCAGTTCTTCGCCGTACTTGGTGTTGAAATTAATGCTTTCCTAGTCCAACTAGGTAACTGCAACAGTGAGTTCATTGCAGAATACTTAGTTACAGTTAAGGATATTTTCCTTCCACTTGCTGCACTGTTTACTCCACTCAAAATTAAGCTAGATATTATAGACGAAGAAGTCGTATCCACACTTATCCCAACACCTTTCAGGAGCAAGCAGAGCAGTAGTTGTAGAAAAAGTAGAGTGCAAATGAGTAGCGGTGCAGACAAAAGCAATAATATTGGCATTAAGAAGAAGAAAATTGGGTCGATTGGCTCAATTTTTAAGCATGCAGATGCTGTCGATAAGTTATTGATGACTCTGGGGTTTCTTGGAGCTGTTGGTGATGGACTCTCTTTAAGGATGTTGGTTGTTTTTAATAGTGGTTTGGTGAACAATATGGGAAGAGGTGGAGTGTTTTATAAGGCATGTCTCTTCTCTTCTCATTTGTCACACACACAACCAAACAAAATAATGTCCTTCCTCTACTTGGCTTGTGCATCATGGCTTACTTGTTTCCTAGAGGGGTTTTGTTGGACAAGAACTGGGGAGAGACAAGCTGCAAAAATGAGAACAAAGTATTTGAAAGCGGTGTTACGCCAAGAGGTAGCTTACTTAGATTCACATCAAACAAGCGCCTCTGAGGTTGTAATGAGCATGTCAAATGACATTCAGATCATTCAAGATGTTCTCAGTGAAAAGGTGCCAGACTTCTTAACTAGAGTCTCTAGTTTCATTGCAAGTTACGCGATAGCATTTGTATTGATGTGGGAACTGGCTTTGGTTGGACTCCCCTTTATATTGCTTCTGGTAATTCCTGGTTGGATTTGTGGAAGAACTTTAACAAGAATAGCAGGGAAGAGAAGACAAGAACAAATTAAGGCGGCCACGATAGCAGAACAGGCAATATCATCTATTAGAACAGTTTATGCATTTGTTGGAGAAAGCAATACTATAACAAAATTTTCTGCAGCTCTACATGGGAATACAAAGCTTGGGTTGAAGCAAGGATTGGTTAAAGGCTTGGCAATTGGTAGCACCTATTCTGTCTTTGCCTTTTGGGCTGTCATGTCTTATTTAGGTAGCAGAATGGTTATATACCATGGTGCTCTAGGAGGGACTGTTTTTGCTGTTGGTGTTTCACTGGTCAGTGGAGCAATGGCAATGGGTTTTGCTTTATCAAACTTAAAGTACATTGCAGAAGCATGCTCAGCCGAAGAGAATCTCATGAAGGTTATCAATCGAGTTCCTGAAATTGACTCAGAAAACATGGAAGGCACAGTTCTGGACAATGTCTCGAGTGAAGTCCAATTTAATCTTGTTAAGTTTGCATATCCATCCAGACCTGAGAGCATTATTCTGAACAACTTTTCTCTAACCATACCAGCCGGAAAGACTGTTGCCTTGGTCGGCTCAAGTGGATCAGGAAAATCAACAGTGACGTTACTGTTGGAAAGATTTTATGACCCACTTGAGGGACAAATTCTACTAGATGGGTTTGCCATTGACAAGTTACAGCTTAAGTGGCTAAGGTCTAAAATGGCATCCGTAAGCCAAGAGCCTTCATTGTTCTCAACCACCATCAAGGAGAATATACTTTTCGGCAAGGAGGATGGCACAATGGAGGAAGTAGTTGAGGCTGCCAAGGCTAGCAATGCTCATAATTTCATATGTCAGTTGCCTCTTGGCTATGACACCCAGGTTGGTGAGAGAGGCATTCAAGTATCAGGTGGACAGAAGCAGAGAATAGCAATTGCCAGAGCACTTATAAAGAAACCCCAAATCCTTCTCCTTGATGAGGCCACCAGTGCATTAGACTCAGAGTCAGAAAGACTCGTTCAAGAAGCCCTCCAGACAGCAGCCACAGGAAGAACCACCATAGTCATTGCTCACCGCTTGTCCACCATTCAGAAGGCTGACGTCATTGCTGTTATGCAAAATGGTTGTGTCATGGAAATTGGTTCACACAATGAACTAATTCAACAGAAAGATGGTGTTTACTCCTCATTTGTCCGCCTCCAACAAACGCCACAAAAGGAGGCACCAGAAGATCAAGGTCATTGGAACGATAGTGCTAGTACTGGACAGTTGGACTCAACCTCCCAGCTTGTTGTATCTGATAGTACTAGTCCCACTGCTCAAGAATCTACAAGAGACCTTTCCAAGCAGAAATCTTCACTTTGGAGATTGTTATCTATGAATATTCCAGAGTGGAAGCAAGCAGTGTTAGGTTGGTTATCTGCAATTCTTTTTGGAGCTGTTGAACCTGTGTTTCAATTCACCTTGGGAACTACATTATCCATCTTTTTCTTGACAAATCCTGAGGAGATTCAGGAGAAAATCATAACTCTCGCTATCTGCTTTTGCGGGTTGTCTGTGTTTGCATCGCTGATTACTCTCCTGCAACACTATACTTTTGCATACATTGGGGAGCATTTGAGTAATCGGATTAGAGAAAGCTTGCTCACGAAAATACTTAGTTTTGAAGTTGGCTGGTTCGATGATGATAGGAATTCTAGCGGTGCCATTTGCTCTAAACTCACCACAGATGCTGAACAAGTGAGATCTTTAGTTGGTGATAGAATGTGTCTTCTTGTCCAAACCATCTCAGGTGTAACTATAGCTTGGACAATGAGCCTAATAATTGCATGGAGGCTTGCCGTAGTCATCATTGCCCTCCAACCCATAGTCATTTTCACCCTTTATTCTAGGCGTGTCCTGCTCGGAAGAATGTCCAGCAAAGCCATTAAAAGCCAGGAGGACAGTAGCAAGCTTGTAGCTGAAGCTATCTACAACCACCGGACCGTAACTGCCTTCTCAGCTGAGAGAAGGATTCTGAAAATGCTAGAAAAGGTCCAAGAAGGCCCACATAGAGAAAGCTTACGATATTCGTGGTTTGCCGGTATTGGGCTCGGGTTTTCCATGAGCATTGCAATGCTCATTGCTGGTTTAAGCTATTGGTATGGCAGCATGCTCGTCTCCCAGGGCTACCTCACACCAAGATCGGCCTTTCAAACCATTCTCATTTTATTAGTCACGGGTAGGGTCATAGCAGATGCTGGAAGCATGACATCGGACCTTACCAATGGCTGGTATGCAATTGGGTCAATTTTCAGTATCTTGGACCGAACCACAAGAATCAAACCCCAAGTTCCAAAAGACTCCCAGGTTGAAAAACTAATGGGCGAGTTCCACTTTCGTGATGTGTACTTTGCATACCCGACTAGGCCCAATGTGATGATCTTCCGAGGCTTCTCAATGAATATTGAAGCCGGAAAATCTACGGCATTGGTGGGGCAAAGTGGGTCAGGTAAATCAACCATTATCGGACTGATCGAGAGATTTTATGATCCAATCCACGGCGTGGTGGAGATCGACAGTCATGATGTAAAGTTGTACCACCTTAGGTCATTGAGGAAACACATGGCATTGGTAAGCCAAGAACCTACGTTATTTGCTGGGACCATAAGAGAAAATATTGTATTTGGAGCGTCAGATAACGTCGATGAAACTATGATCATTGAGGCAGCAAGGGCTGCCAATGCTCATGATTTCATCAGCGGGTTAAAGGACGGGTACAACACATCTTGTGGGAGTGGAGGATTGCAACTCTCTGGGGGTCAGAAGCAACGCATTGCTATAGCAAGAGCTATACTGAGAAACCCTGCAGTGTTGTTACTTGACGAGGCAACCAGCGCGCTAGATAGCCATTCGGAGAAGGTGGTTCAAGATGCGCTGGAGCATATCATGGTGGGGAGGACCAGTGTCGTAGTGGCGCATAGGTTGAGTACCATACAGAACTGTGACCTCATTACTGTGCTTGATAAAGGAAAGGTAGTGGAGAAGGGGTCTCACTCTTCTCTTTTGGCCAAGGGACCTTCAGGAGCATATTGCTCCTTGGTCAATTTCACAAGAAGTACACAATCTTCAGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

2413

Amino Acids

265.03

Weight (kDa)

8.57

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 123 - 248 2.5e-11 ABC transporter transmembrane region
ABC_tran PF00005 358 - 506 5.8e-29 ABC transporter
ABC_membrane PF00664 621 - 888 3e-41 ABC transporter transmembrane region
ABC_tran PF00005 961 - 1011 3.9e-09 ABC transporter
ABC_tran PF00005 1020 - 1060 3.7e-07 ABC transporter
ABC_membrane PF00664 1259 - 1487 3e-40 ABC transporter transmembrane region
ABC_tran PF00005 1555 - 1704 9.3e-33 ABC transporter
ABC_membrane PF00664 1846 - 2113 6.1e-45 ABC transporter transmembrane region
ABC_tran PF00005 2184 - 2333 1.5e-30 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 332, 498, 3726, 5072
AasI GACNNNNNNGTC 1 cut(s) 3440
AatII GACGTC 1 cut(s) 5226
Acc36I ACCTGC 3 cut(s) 203, 2526, 2528
AccB1I GGYRCC 5 cut(s) 43, 2159, 4006, 5344, 5825
AccB7I CCANNNNNTGG 4 cut(s) 640, 874, 6393, 6667
AccII CGCG 4 cut(s) 100, 536, 4052, 7001
AclWI GGATC 9 cut(s) 936, 1138, 1846, 2721, 2950, 2981, 3182, 4732, 6647
AcoI YGGCCR 4 cut(s) 753, 865, 4188, 7170
AcsI RAATTY 6 cut(s) 892, 1019, 2149, 4265, 4785, 5815
AcuI CTGAAG 4 cut(s) 2439, 6105, 7167, 7215
AcyI GRCGYC 2 cut(s) 44, 5223
AdeI CACNNNGTG 2 cut(s) 3072, 6667
AflII CTTAAG 2 cut(s) 1229, 4823
AgeI ACCGGT 1 cut(s) 2675
AhdI GACNNNNNGTC 2 cut(s) 1531, 5125
AhlI ACTAGT 1 cut(s) 5429
AjiI CACGTC 2 cut(s) 640, 3228
AjuI GAANNNNNNNTTGG 2 cut(s) 4298, 4330
AleI CACNNNNGTG 2 cut(s) 3042, 6501
Alw21I GWGCWC 6 cut(s) 841, 1474, 2173, 2791, 4414, 5068
AlwI GGATC 9 cut(s) 936, 1138, 1846, 2721, 2950, 2981, 3182, 4732, 6647
AlwNI CAGNNNCTG 4 cut(s) 1080, 3602, 5855, 6362
Ama87I CYCGRG 3 cut(s) 2784, 4600, 6215
ApoI RAATTY 6 cut(s) 892, 1019, 2149, 4265, 4785, 5815
AseI ATTAAT 4 cut(s) 948, 2969, 3050, 3303
AsiGI ACCGGT 1 cut(s) 2675
Asp700I GAANNNNTTC 3 cut(s) 1076, 1686, 5280
AsuC2I CCSGG 1 cut(s) 61
AsuII TTCGAA 1 cut(s) 1618
AsuNHI GCTAGC 1 cut(s) 4952
AvaI CYCGRG 3 cut(s) 2784, 4600, 6215
AxyI CCTNAGG 2 cut(s) 5625, 6707
BaeI ACNNNNGTAYC 2 cut(s) 1395, 1428
BalI TGGCCA 3 cut(s) 755, 867, 7172
BanI GGYRCC 5 cut(s) 43, 2159, 4006, 5344, 5825
BanII GRGCYC 4 cut(s) 1124, 1811, 2791, 6216
BarI GAAGNNNNNNTAC 3 cut(s) 1025, 1057, 7213
BbsI GAAGAC 3 cut(s) 2219, 4174, 5885
Bbv12I GWGCWC 6 cut(s) 841, 1474, 2173, 2791, 4414, 5068
BbvCI CCTCAGC 1 cut(s) 2333
BceAI ACGGC 6 cut(s) 164, 2297, 3269, 5948, 6603, 6679
BcgI CGANNNNNNTGC 2 cut(s) 6259, 6293
BciVI GTATCC 3 cut(s) 1391, 1918, 3457
BclI TGATCA 1 cut(s) 6819
BcnI CCSGG 1 cut(s) 61
BcuI ACTAGT 1 cut(s) 5429
BfmI CTRYAG 6 cut(s) 1223, 2256, 4272, 5922, 6942, 6969
BfoI RGCGCY 2 cut(s) 47, 3942
BfrI CTTAAG 2 cut(s) 1229, 4823
BfuAI ACCTGC 3 cut(s) 203, 2526, 2528
BfuI GTATCC 3 cut(s) 1391, 1918, 3457
BglI GCCNNNNNGGC 3 cut(s) 791, 2456, 4364
BglII AGATCT 2 cut(s) 2201, 5867
BlpI GCTNAGC 3 cut(s) 2172, 2346, 4513
BmcAI AGTACT 4 cut(s) 769, 1783, 5383, 5428
BmeRI GACNNNNNGTC 2 cut(s) 1531, 5125
BmeT110I CYCGRG 3 cut(s) 2784, 4600, 6215
BmgBI CACGTC 2 cut(s) 640, 3228
BmrI ACTGGG 1 cut(s) 3858
BmtI GCTAGC 1 cut(s) 4956
BmuI ACTGGG 1 cut(s) 3858
BoxI GACNNNNGTC 1 cut(s) 7067
BpiI GAAGAC 3 cut(s) 2219, 4174, 5885
BplI GAGNNNNNCTC 4 cut(s) 58, 90, 1179, 1211
BpmI CTGGAG 5 cut(s) 480, 959, 2775, 5138, 7061
Bpu10I CCTNAGC 3 cut(s) 1238, 2333, 4832
Bpu1102I GCTNAGC 3 cut(s) 2172, 2346, 4513
Bpu14I TTCGAA 1 cut(s) 1618
BpuEI CTTGAG 7 cut(s) 1033, 1108, 1202, 1377, 4702, 4796, 5427
BpuMI CCSGG 1 cut(s) 61
BsaAI YACGTR 2 cut(s) 482, 2507
BsaBI GATNNNNATC 2 cut(s) 3927, 5494
BsaHI GRCGYC 2 cut(s) 44, 5223
BsaI GGTCTC 2 cut(s) 5451, 7158
BsaWI WCCGGW 4 cut(s) 2436, 2675, 2763, 6102
Bse118I RCCGGY 3 cut(s) 1667, 2675, 6203
Bse21I CCTNAGG 2 cut(s) 5625, 6707
Bse8I GATNNNNATC 2 cut(s) 3927, 5494
BseJI GATNNNNATC 2 cut(s) 3927, 5494
BsePI GCGCGC 1 cut(s) 6999
BseRI GAGGAG 3 cut(s) 619, 5296, 5642
BseYI CCCAGC 4 cut(s) 923, 1827, 5406, 6761
BsgI GTGCAG 4 cut(s) 390, 3110, 3378, 3546
Bsh1236I CGCG 4 cut(s) 100, 536, 4052, 7001
Bsh1285I CGRYCG 2 cut(s) 31, 2680
BshNI GGYRCC 5 cut(s) 43, 2159, 4006, 5344, 5825
BshTI ACCGGT 1 cut(s) 2675
BsiEI CGRYCG 2 cut(s) 31, 2680
BsiHKAI GWGCWC 6 cut(s) 841, 1474, 2173, 2791, 4414, 5068
BsiHKCI CYCGRG 3 cut(s) 2784, 4600, 6215
BslFI GGGAC 9 cut(s) 18, 284, 1996, 3117, 4435, 4794, 5418, 6778, 7191
BsmBI CGTCTC 3 cut(s) 192, 1730, 6286
BsmFI GGGAC 9 cut(s) 18, 284, 1996, 3117, 4435, 4794, 5418, 6778, 7191
BsmI GAATGC 1 cut(s) 5019
Bso31I GGTCTC 2 cut(s) 5451, 7158
BsoBI CYCGRG 3 cut(s) 2784, 4600, 6215
Bsp119I TTCGAA 1 cut(s) 1618
Bsp1286I GDGCHC 9 cut(s) 841, 1124, 1474, 1811, 2173, 2791, 4414, 5068, 6216
Bsp1407I TGTACA 2 cut(s) 1707, 2233
Bsp1720I GCTNAGC 3 cut(s) 2172, 2346, 4513
Bsp19I CCATGG 5 cut(s) 832, 1572, 1920, 2721, 4405
BspFNI CGCG 4 cut(s) 100, 536, 4052, 7001
BspHI TCATGA 4 cut(s) 1369, 4530, 6685, 6850
BspMAI CTGCAG 3 cut(s) 1227, 4276, 6973
BspMI ACCTGC 3 cut(s) 203, 2526, 2528
BspOI GCTAGC 1 cut(s) 4956
BspPI GGATC 9 cut(s) 936, 1138, 1846, 2721, 2950, 2981, 3182, 4732, 6647
BspT104I TTCGAA 1 cut(s) 1618
BspT107I GGYRCC 5 cut(s) 43, 2159, 4006, 5344, 5825
BspTI CTTAAG 2 cut(s) 1229, 4823
BspTNI GGTCTC 2 cut(s) 5451, 7158
BsrFI RCCGGY 3 cut(s) 1667, 2675, 6203
BsrGI TGTACA 2 cut(s) 1707, 2233
BssAI RCCGGY 3 cut(s) 1667, 2675, 6203
BssHII GCGCGC 1 cut(s) 6999
BssNI GRCGYC 2 cut(s) 44, 5223
Bst6I CTCTTC 7 cut(s) 1797, 3703, 3743, 3748, 4157, 4515, 7165
BstACI GRCGYC 2 cut(s) 44, 5223
BstAFI CTTAAG 2 cut(s) 1229, 4823
BstAPI GCANNNNNTGC 2 cut(s) 344, 6839
BstAUI TGTACA 2 cut(s) 1707, 2233
BstBAI YACGTR 2 cut(s) 482, 2507
BstBI TTCGAA 1 cut(s) 1618
BstDSI CCRYGG 7 cut(s) 146, 832, 1572, 1920, 2721, 4405, 6661
BstEII GGTNACC 1 cut(s) 2213
BstENI CCTNNNNNAGG 1 cut(s) 5099
BstFNI CGCG 4 cut(s) 100, 536, 4052, 7001
BstH2I RGCGCY 2 cut(s) 47, 3942
BstMCI CGRYCG 2 cut(s) 31, 2680
BstNSI RCATGY 8 cut(s) 662, 918, 1004, 3596, 3735, 3964, 4512, 6277
BstPAI GACNNNNGTC 1 cut(s) 7067
BstPI GGTNACC 1 cut(s) 2213
BstSFI CTRYAG 6 cut(s) 1223, 2256, 4272, 5922, 6942, 6969
BstUI CGCG 4 cut(s) 100, 536, 4052, 7001
BstV2I GAAGAC 3 cut(s) 2219, 4174, 5885
BstX2I RGATCY 4 cut(s) 1838, 2201, 2713, 5867
BstXI CCANNNNNNTGG 4 cut(s) 1835, 2728, 2875, 3044
BstYI RGATCY 4 cut(s) 1838, 2201, 2713, 5867
Bsu36I CCTNAGG 2 cut(s) 5625, 6707
BsuI GTATCC 3 cut(s) 1391, 1918, 3457
BtgI CCRYGG 7 cut(s) 146, 832, 1572, 1920, 2721, 4405, 6661
BtgZI GCGATG 2 cut(s) 2947, 5673
BtrI CACGTC 2 cut(s) 640, 3228
BtsI GCAGTG 6 cut(s) 354, 630, 3159, 5436, 5532, 6978
BveI ACCTGC 3 cut(s) 203, 2526, 2528
CaiI CAGNNNCTG 4 cut(s) 1080, 3602, 5855, 6362
CciI TCATGA 4 cut(s) 1369, 4530, 6685, 6850
Cfr10I RCCGGY 3 cut(s) 1667, 2675, 6203
CpoI CGGWCCG 3 cut(s) 102, 2439, 6105
CseI GACGC 3 cut(s) 525, 2195, 6783
CspAI ACCGGT 1 cut(s) 2675
CspI CGGWCCG 3 cut(s) 102, 2439, 6105
DinI GGCGCC 1 cut(s) 45
DraIII CACNNNGTG 2 cut(s) 3072, 6667
DrdI GACNNNNNNGTC 1 cut(s) 3440
DriI GACNNNNNGTC 2 cut(s) 1531, 5125
DseDI GACNNNNNNGTC 1 cut(s) 3440
EaeI YGGCCR 4 cut(s) 753, 865, 4188, 7170
Eam1104I CTCTTC 7 cut(s) 1797, 3703, 3743, 3748, 4157, 4515, 7165
Eam1105I GACNNNNNGTC 2 cut(s) 1531, 5125
EarI CTCTTC 7 cut(s) 1797, 3703, 3743, 3748, 4157, 4515, 7165
EciI GGCGGA 1 cut(s) 5306
Ecl136II GAGCTC 1 cut(s) 2789
Eco147I AGGCCT 1 cut(s) 2293
Eco24I GRGCYC 4 cut(s) 1124, 1811, 2791, 6216
Eco31I GGTCTC 2 cut(s) 5451, 7158
Eco32I GATATC 1 cut(s) 1152
Eco53kI GAGCTC 1 cut(s) 2789
Eco57I CTGAAG 4 cut(s) 2439, 6105, 7167, 7215
Eco81I CCTNAGG 2 cut(s) 5625, 6707
Eco88I CYCGRG 3 cut(s) 2784, 4600, 6215
Eco91I GGTNACC 1 cut(s) 2213
EcoICRI GAGCTC 1 cut(s) 2789
EcoNI CCTNNNNNAGG 1 cut(s) 5099
EcoO109I RGGNCCY 1 cut(s) 7178
EcoO65I GGTNACC 1 cut(s) 2213
EcoRI GAATTC 1 cut(s) 5815
EcoRV GATATC 1 cut(s) 1152
EcoT22I ATGCAT 1 cut(s) 4237
EcoT38I GRGCYC 4 cut(s) 1124, 1811, 2791, 6216
EgeI GGCGCC 1 cut(s) 45
EheI GGCGCC 1 cut(s) 45
Esp3I CGTCTC 3 cut(s) 192, 1730, 6286
FalI AAGNNNNNCTT 2 cut(s) 2613, 2645
FaqI GGGAC 9 cut(s) 18, 284, 1996, 3117, 4435, 4794, 5418, 6778, 7191
FauI CCCGC 4 cut(s) 839, 2203, 5663, 6857
FauNDI CATATG 4 cut(s) 208, 259, 313, 4973
FbaI TGATCA 1 cut(s) 6819
FriOI GRGCYC 4 cut(s) 1124, 1811, 2791, 6216
GsaI CCCAGC 4 cut(s) 927, 1831, 5410, 6765
GsuI CTGGAG 5 cut(s) 480, 959, 2775, 5138, 7061
HaeII RGCGCY 2 cut(s) 47, 3942
HgaI GACGC 3 cut(s) 525, 2195, 6783
Hin1I GRCGYC 2 cut(s) 44, 5223
HincII GTYRAC 2 cut(s) 2919, 2955
HindII GTYRAC 2 cut(s) 2919, 2955
HindIII AAGCTT 5 cut(s) 2408, 4295, 5761, 6074, 6181
Hpy99I CGWCG 3 cut(s) 541, 3059, 6809
HpyCH4IV ACGT 9 cut(s) 481, 639, 2506, 3115, 3227, 4745, 5223, 6752, 6804
HpySE526I ACGT 9 cut(s) 481, 639, 2506, 3115, 3227, 4745, 5223, 6752, 6804
Hsp92I GRCGYC 2 cut(s) 44, 5223
KasI GGCGCC 1 cut(s) 43
Ksp22I TGATCA 1 cut(s) 6819
MaeII ACGT 9 cut(s) 481, 639, 2506, 3115, 3227, 4745, 5223, 6752, 6804
MfeI CAATTG 5 cut(s) 787, 2578, 4332, 5055, 6402
MflI RGATCY 4 cut(s) 1838, 2201, 2713, 5867
MhlI GDGCHC 9 cut(s) 841, 1124, 1474, 1811, 2173, 2791, 4414, 5068, 6216
MlsI TGGCCA 3 cut(s) 755, 867, 7172
MluNI TGGCCA 3 cut(s) 755, 867, 7172
Mly113I GGCGCC 1 cut(s) 44
Mox20I TGGCCA 3 cut(s) 755, 867, 7172
Mph1103I ATGCAT 1 cut(s) 4237
MroXI GAANNNNTTC 3 cut(s) 1076, 1686, 5280
MscI TGGCCA 3 cut(s) 755, 867, 7172
MslI CAYNNNNRTG 7 cut(s) 1698, 2060, 3042, 3597, 6236, 6501, 7118
Msp20I TGGCCA 3 cut(s) 755, 867, 7172
MspA1I CMGCKG 6 cut(s) 412, 582, 923, 2417, 6125, 6864
MspCI CTTAAG 2 cut(s) 1229, 4823
MunI CAATTG 5 cut(s) 787, 2578, 4332, 5055, 6402
Mva1269I GAATGC 1 cut(s) 5019
MvnI CGCG 4 cut(s) 100, 536, 4052, 7001
NarI GGCGCC 1 cut(s) 44
NciI CCSGG 1 cut(s) 61
NcoI CCATGG 5 cut(s) 832, 1572, 1920, 2721, 4405
NdeI CATATG 4 cut(s) 208, 259, 313, 4973
NheI GCTAGC 1 cut(s) 4952
NmeAIII GCCGAG 3 cut(s) 169, 2435, 2584
NmuCI GTSAC 6 cut(s) 1242, 2213, 3753, 4741, 6337, 7106
NsiI ATGCAT 1 cut(s) 4237
NspI RCATGY 8 cut(s) 662, 918, 1004, 3596, 3735, 3964, 4512, 6277
NspV TTCGAA 1 cut(s) 1618
OliI CACNNNNGTG 2 cut(s) 3042, 6501
PaeI GCATGC 3 cut(s) 3596, 4512, 6277
PaeR7I CTCGAG 1 cut(s) 4600
PagI TCATGA 4 cut(s) 1369, 4530, 6685, 6850
PasI CCCWGGG 1 cut(s) 6286
PauI GCGCGC 1 cut(s) 6999
PceI AGGCCT 1 cut(s) 2293
PcsI WCGNNNNNNNCGW 3 cut(s) 2970, 3441, 6636
PctI GAATGC 1 cut(s) 5019
PdmI GAANNNNTTC 3 cut(s) 1076, 1686, 5280
PflFI GACNNNGTC 1 cut(s) 4595
PflMI CCANNNNNTGG 4 cut(s) 640, 874, 6393, 6667
PfoI TCCNGGA 1 cut(s) 936
PinAI ACCGGT 1 cut(s) 2675
Ple19I CGATCG 1 cut(s) 31
PluTI GGCGCC 1 cut(s) 47
Ppu21I YACGTR 2 cut(s) 482, 2507
PpuMI RGGWCCY 1 cut(s) 7178
PshAI GACNNNNGTC 1 cut(s) 7067
PshBI ATTAAT 4 cut(s) 948, 2969, 3050, 3303
PsiI TTATAA 4 cut(s) 332, 498, 3726, 5072
Psp124BI GAGCTC 1 cut(s) 2791
Psp5II RGGWCCY 1 cut(s) 7178
PspEI GGTNACC 1 cut(s) 2213
PspFI CCCAGC 4 cut(s) 923, 1827, 5406, 6761
PspPPI RGGWCCY 1 cut(s) 7178
PstI CTGCAG 3 cut(s) 1227, 4276, 6973
PstNI CAGNNNCTG 4 cut(s) 1080, 3602, 5855, 6362
PsuI RGATCY 4 cut(s) 1838, 2201, 2713, 5867
PsyI GACNNNGTC 1 cut(s) 4595
PteI GCGCGC 1 cut(s) 6999
PvuI CGATCG 1 cut(s) 31
PvuII CAGCTG 3 cut(s) 923, 2417, 6125
RseI CAYNNNNRTG 7 cut(s) 1698, 2060, 3042, 3597, 6236, 6501, 7118
Rsr2I CGGWCCG 3 cut(s) 102, 2439, 6105
RsrII CGGWCCG 3 cut(s) 102, 2439, 6105
SacI GAGCTC 1 cut(s) 2791
ScaI AGTACT 4 cut(s) 769, 1783, 5383, 5428
SduI GDGCHC 9 cut(s) 841, 1124, 1474, 1811, 2173, 2791, 4414, 5068, 6216
SfcI CTRYAG 6 cut(s) 1223, 2256, 4272, 5922, 6942, 6969
SfoI GGCGCC 1 cut(s) 45
Sfr274I CTCGAG 1 cut(s) 4600
SfuI TTCGAA 1 cut(s) 1618
SlaI CTCGAG 1 cut(s) 4600
SmiMI CAYNNNNRTG 7 cut(s) 1698, 2060, 3042, 3597, 6236, 6501, 7118
SpeI ACTAGT 1 cut(s) 5429
SphI GCATGC 3 cut(s) 3596, 4512, 6277
SseBI AGGCCT 1 cut(s) 2293
SspDI GGCGCC 1 cut(s) 43
SspI AATATT 4 cut(s) 3544, 5506, 6568, 6781
SstI GAGCTC 1 cut(s) 2791
StuI AGGCCT 1 cut(s) 2293
TaiI ACGT 9 cut(s) 484, 642, 2509, 3118, 3230, 4748, 5226, 6755, 6807
TaqII GACCGA 2 cut(s) 2232, 6444
TauI GCSGC 2 cut(s) 2607, 4190
TseFI GTSAC 6 cut(s) 1242, 2213, 3753, 4741, 6337, 7106
Tsp45I GTSAC 6 cut(s) 1242, 2213, 3753, 4741, 6337, 7106
TspGWI ACGGA 5 cut(s) 516, 1246, 1926, 2825, 4840
Tth111I GACNNNGTC 1 cut(s) 4595
Van91I CCANNNNNTGG 4 cut(s) 640, 874, 6393, 6667
Vha464I CTTAAG 2 cut(s) 1229, 4823
VspI ATTAAT 4 cut(s) 948, 2969, 3050, 3303
XagI CCTNNNNNAGG 1 cut(s) 5099
XapI RAATTY 6 cut(s) 892, 1019, 2149, 4265, 4785, 5815
XceI RCATGY 8 cut(s) 662, 918, 1004, 3596, 3735, 3964, 4512, 6277
XcmI CCANNNNNNNNNTGG 2 cut(s) 264, 7072
XhoI CTCGAG 1 cut(s) 4600
XmnI GAANNNNTTC 3 cut(s) 1076, 1686, 5280
ZraI GACGTC 1 cut(s) 5224
ZrmI AGTACT 4 cut(s) 769, 1783, 5383, 5428
Zsp2I ATGCAT 1 cut(s) 4237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.