Rh2AG615600

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
84034559 .. 84035026
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG615600.1

Sequence Viewer

Length: 468 bp
ATGGAAATTGGTTCACATAATGAACTAATTCAACAGAAAGATGGTGTTTACTCCTCATTTGTCCGCCTCCAACAAACGCCACAAAAGGAGGCACCAGAAGATCAAGGTCATTGGAACTATAGTGCTAGTACTAGACAGTTAGACTCAACCTCCCAGCTTGTTGTATCTGATAGTACTAGTCCTACTGCTCAAGAATCTACAAGCGACCTTTCCAAGCAGAAATCTTCACTTTGGAGATTGCTATCTATGAATATTCCAGAGTGGAAGCAAGCAGTGTTAGGTTGGTTATCTGCAATTCTTTTTGGAGCTATTGAACCTGTGTTTCAATTCACCTTGGGAACTACATTATCCATCTTTTTATTGACAAATACCGAGGAGATTAAGGAGAAAATCAAAACTCTCGCTATCTGCTTTTGCGGGTTGTCTGTGTTTGCATCGCTAATTACTCTCCTGCAACACGTACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

17.29

Weight (kDa)

5.3

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AciI CCGC 2 cut(s) 64, 417
AfaI GTAC 3 cut(s) 130, 175, 462
AflIII ACRYGT 1 cut(s) 457
AgsI TTSAA 3 cut(s) 32, 314, 326
AhlI ACTAGT 1 cut(s) 176
AluBI AGCT 2 cut(s) 157, 308
AluI AGCT 2 cut(s) 157, 308
Asp700I GAANNNNTTC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 322
BanI GGYRCC 1 cut(s) 91
BccI CCATC 2 cut(s) 35, 359
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 3 cut(s) 126, 132, 177
BfmI CTRYAG 2 cut(s) 118, 464
BmcAI AGTACT 2 cut(s) 130, 175
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 460
BsaBI GATNNNNATC 1 cut(s) 241
BsaJI CCNNGG 2 cut(s) 333, 372
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bse8I GATNNNNATC 1 cut(s) 241
BseDI CCNNGG 2 cut(s) 333, 372
BseJI GATNNNNATC 1 cut(s) 241
BseRI GAGGAG 2 cut(s) 43, 389
BseYI CCCAGC 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 2 cut(s) 64, 417
BspLI GGNNCC 1 cut(s) 93
BspT107I GGYRCC 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 333, 372
BssMI GATC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 138
BstBAI YACGTR 1 cut(s) 460
BstC8I GCNNGC 1 cut(s) 270
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstSFI CTRYAG 2 cut(s) 118, 464
BtgZI GCGATG 1 cut(s) 420
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 270
Csp6I GTAC 3 cut(s) 129, 174, 461
CviJI RGCY 2 cut(s) 157, 308
CviKI_1 RGCY 2 cut(s) 157, 308
CviQI GTAC 3 cut(s) 129, 174, 461
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
EciI GGCGGA 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FaiI YATR 4 cut(s) 18, 120, 248, 466
FauI CCCGC 1 cut(s) 410
FspBI CTAG 3 cut(s) 126, 132, 177
GsaI CCCAGC 1 cut(s) 157
HinfI GANTC 2 cut(s) 143, 194
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 2 cut(s) 14, 49
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 191, 257
Hpy8I GTNNAC 2 cut(s) 14, 49
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 3 cut(s) 293, 434, 454
HpySE526I ACGT 1 cut(s) 459
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 305
LpnPI CCDG 5 cut(s) 108, 167, 270, 330, 464
LweI GCATC 1 cut(s) 443
MaeI CTAG 3 cut(s) 126, 132, 177
MaeII ACGT 1 cut(s) 459
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 2 cut(s) 110, 216
MluCI AATT 5 cut(s) 6, 27, 294, 326, 441
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 5 cut(s) 64, 77, 82, 160, 367
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 1 cut(s) 381
NdeII GATC 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 194
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Ppu21I YACGTR 1 cut(s) 460
PspFI CCCAGC 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 93
RsaI GTAC 3 cut(s) 130, 175, 462
RsaNI GTAC 3 cut(s) 129, 174, 461
SaqAI TTAA 1 cut(s) 381
Sau3AI GATC 1 cut(s) 100
ScaI AGTACT 2 cut(s) 130, 175
SchI GAGTC 1 cut(s) 137
SetI ASST 9 cut(s) 109, 152, 159, 210, 283, 310, 319, 335, 462
SfaNI GCATC 1 cut(s) 443
SfcI CTRYAG 2 cut(s) 118, 464
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
SpeI ACTAGT 1 cut(s) 176
Sse9I AATT 5 cut(s) 6, 27, 294, 326, 441
SsiI CCGC 2 cut(s) 64, 417
SspI AATATT 1 cut(s) 253
SspMI CTAG 3 cut(s) 126, 132, 177
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 138
TaiI ACGT 1 cut(s) 462
TasI AATT 5 cut(s) 6, 27, 294, 326, 441
TatI WGTACW 2 cut(s) 128, 173
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 279
TspDTI ATGAA 2 cut(s) 36, 263
TspRI CASTG 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 3 cut(s) 126, 132, 177
ZrmI AGTACT 2 cut(s) 130, 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.