Rh2AG616000

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000317
Physical Location & Seq
Forward (+)
84075600 .. 84076804
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG616000.1

Sequence Viewer

Length: 690 bp
ATGGGGGGGAAAAAGGAAGATAAGAAGAAAGGTTGTACATCGTCTATGCGCTCCGTTTTCATGCATGCCGATGGTGTCGATAAAGTCCTGATGATCTTTGGATTGTTGGGAGCCATCGGCGATGGCTGCTCTACTCCATTTGTCTTGCTAATCACTGGCCGCTTGATGAACAATGTCGGTGGCGCCTCAAGTGACGCTCAAGATGTTTTCTTGCATAACATCAATATGGTGCCAAACTTTATAATGAACAGCTCTTTGTTCTTTGGGAGCTATGTGGCGGCATTCATAATGCTGTGGAGGCTAGCCATCGTTGCATTTCCGTTTGTGGTACTTCTGGTAATTCCGGGATTGATTTACGGAAGGATTTTGATGGGACTGGCTAGGCAGATTAGAGATGAATACAACAAGACTGGAACAATAGCAGAACAGGCACTGTCATCAATCAGAACCGTTTACGCGTTTGTTGGGGAAACAAAAACAATTTCGGAGTTCTCTGCAGCTCTACAAGGTTCAGTGAATTTGGGATTGAGTCAAGGCCTGGCAAAAGGCTTGGCCATTGGTAGCAACGGCATCGCTTTTGCTATTTGGTCTTTCATGTCCTACTATGGCAGCAGCATGGTCATGTATCATGGCGCACTTGGAGGCACTGTTGTATCAGCTGGTACTGGAATAATCCTTGGTGGATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

229

Amino Acids

24.22

Weight (kDa)

9.12

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 73 - 211 1.5e-18 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AccB1I GGYRCC 2 cut(s) 182, 229
AccII CGCG 1 cut(s) 458
AciI CCGC 2 cut(s) 160, 278
AcoI YGGCCR 2 cut(s) 157, 552
AcsI RAATTY 1 cut(s) 517
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 3 cut(s) 37, 330, 664
AflIII ACRYGT 1 cut(s) 456
AjnI CCWGG 1 cut(s) 537
AluBI AGCT 4 cut(s) 252, 270, 500, 659
AluI AGCT 4 cut(s) 252, 270, 500, 659
AlwNI CAGNNNCTG 1 cut(s) 433
AoxI GGCC 3 cut(s) 157, 535, 552
ApeKI GCWGC 4 cut(s) 126, 497, 609, 612
ApoI RAATTY 1 cut(s) 517
AspLEI GCGC 3 cut(s) 51, 185, 635
AsuC2I CCSGG 1 cut(s) 345
AsuNHI GCTAGC 1 cut(s) 301
BaeI ACNNNNGTAYC 2 cut(s) 636, 669
BalI TGGCCA 1 cut(s) 554
BanI GGYRCC 2 cut(s) 182, 229
BbvI GCAGC 4 cut(s) 113, 509, 621, 624
BccI CCATC 5 cut(s) 65, 116, 122, 314, 364
BceAI ACGGC 1 cut(s) 583
BcgI CGANNNNNNTGC 2 cut(s) 553, 587
BciT130I CCWGG 1 cut(s) 539
BcnI CCSGG 1 cut(s) 345
BfaI CTAG 2 cut(s) 302, 381
BfmI CTRYAG 1 cut(s) 495
BfoI RGCGCY 1 cut(s) 186
BisI GCNGC 6 cut(s) 127, 160, 279, 498, 610, 613
BlsI GCNGC 6 cut(s) 128, 161, 280, 499, 611, 614
Bme1390I CCNGG 2 cut(s) 345, 539
BmiI GGNNCC 3 cut(s) 112, 184, 231
BmrFI CCNGG 2 cut(s) 345, 539
BmsI GCATC 1 cut(s) 579
BmtI GCTAGC 1 cut(s) 305
BpuEI CTTGAG 2 cut(s) 172, 183
BpuMI CCSGG 1 cut(s) 345
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 676
BsaXI ACNNNNNCTCC 2 cut(s) 633, 663
Bse1I ACTGG 4 cut(s) 160, 381, 415, 670
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 1 cut(s) 676
BseNI ACTGG 4 cut(s) 160, 381, 415, 670
BseXI GCAGC 4 cut(s) 113, 509, 621, 624
Bsh1236I CGCG 1 cut(s) 458
BshFI GGCC 3 cut(s) 159, 537, 554
BshNI GGYRCC 2 cut(s) 182, 229
BsiSI CCGG 1 cut(s) 344
BslFI GGGAC 1 cut(s) 387
BsmFI GGGAC 1 cut(s) 387
BsmI GAATGC 1 cut(s) 281
BsnI GGCC 3 cut(s) 159, 537, 554
Bsp1407I TGTACA 1 cut(s) 35
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 2 cut(s) 160, 278
BspANI GGCC 3 cut(s) 159, 537, 554
BspFNI CGCG 1 cut(s) 458
BspLI GGNNCC 3 cut(s) 112, 184, 231
BspMAI CTGCAG 1 cut(s) 499
BspOI GCTAGC 1 cut(s) 305
BspT107I GGYRCC 2 cut(s) 182, 229
BsrGI TGTACA 1 cut(s) 35
BsrI ACTGG 4 cut(s) 160, 381, 415, 670
BssECI CCNNGG 1 cut(s) 676
BssMI GATC 1 cut(s) 93
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 676
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 3 cut(s) 435, 451, 649
BstACI GRCGYC 1 cut(s) 183
BstAUI TGTACA 1 cut(s) 35
BstC8I GCNNGC 2 cut(s) 66, 303
BstFNI CGCG 1 cut(s) 458
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 3 cut(s) 51, 185, 635
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 4 cut(s) 126, 298, 311, 428
BstNI CCWGG 1 cut(s) 539
BstNSI RCATGY 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 343, 537
BstSFI CTRYAG 1 cut(s) 495
BstUI CGCG 1 cut(s) 458
BstV1I GCAGC 4 cut(s) 113, 509, 621, 624
BsuRI GGCC 3 cut(s) 159, 537, 554
BtgZI GCGATG 2 cut(s) 135, 556
BtsIMutI CAGTG 4 cut(s) 153, 431, 519, 645
Cac8I GCNNGC 2 cut(s) 66, 303
CaiI CAGNNNCTG 1 cut(s) 433
CfoI GCGC 3 cut(s) 51, 185, 635
CseI GACGC 1 cut(s) 203
Csp6I GTAC 3 cut(s) 36, 329, 663
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 6 cut(s) 61, 65, 595, 616, 622, 629
CviQI GTAC 3 cut(s) 36, 329, 663
DinI GGCGCC 1 cut(s) 184
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
EaeI YGGCCR 2 cut(s) 157, 552
Eco130I CCWWGG 1 cut(s) 676
Eco147I AGGCCT 1 cut(s) 537
EcoRII CCWGG 1 cut(s) 537
EcoT14I CCWWGG 1 cut(s) 676
EcoT22I ATGCAT 1 cut(s) 66
EgeI GGCGCC 1 cut(s) 184
EheI GGCGCC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 676
FaeI CATG 6 cut(s) 64, 68, 598, 619, 625, 632
FaqI GGGAC 1 cut(s) 387
FatI CATG 6 cut(s) 60, 64, 594, 615, 621, 628
Fnu4HI GCNGC 6 cut(s) 127, 160, 279, 498, 610, 613
Fsp4HI GCNGC 6 cut(s) 127, 160, 279, 498, 610, 613
FspBI CTAG 2 cut(s) 302, 381
GlaI GCGC 3 cut(s) 50, 184, 634
GluI GCNGC 6 cut(s) 127, 160, 279, 498, 610, 613
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 3 cut(s) 159, 537, 554
HapII CCGG 1 cut(s) 344
HgaI GACGC 1 cut(s) 203
HhaI GCGC 3 cut(s) 51, 185, 635
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 6 cut(s) 64, 68, 598, 619, 625, 632
Hin6I GCGC 3 cut(s) 49, 183, 633
HinP1I GCGC 3 cut(s) 49, 183, 633
HinfI GANTC 1 cut(s) 529
HpaII CCGG 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 2 cut(s) 446, 487
Hpy188III TCNNGA 2 cut(s) 88, 200
Hpy8I GTNNAC 1 cut(s) 454
HpyAV CCTTC 1 cut(s) 354
HpyCH4III ACNGT 3 cut(s) 435, 451, 649
HpyCH4V TGCA 4 cut(s) 64, 214, 314, 497
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 298, 311, 428
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 6 cut(s) 64, 68, 598, 619, 625, 632
HspAI GCGC 3 cut(s) 49, 183, 633
KasI GGCGCC 1 cut(s) 182
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 3 cut(s) 56, 110, 267
Lsp1109I GCAGC 4 cut(s) 113, 509, 621, 624
LweI GCATC 1 cut(s) 579
MaeI CTAG 2 cut(s) 302, 381
MaeIII GTNAC 1 cut(s) 191
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 2 cut(s) 29, 37
MlsI TGGCCA 1 cut(s) 554
MluCI AATT 3 cut(s) 339, 480, 517
MluI ACGCGT 1 cut(s) 456
MluNI TGGCCA 1 cut(s) 554
Mly113I GGCGCC 1 cut(s) 183
MlyI GAGTC 1 cut(s) 538
MnlI CCTC 3 cut(s) 196, 291, 635
Mox20I TGGCCA 1 cut(s) 554
Mph1103I ATGCAT 1 cut(s) 66
MscI TGGCCA 1 cut(s) 554
MslI CAYNNNNRTG 3 cut(s) 69, 224, 620
Msp20I TGGCCA 1 cut(s) 554
MspA1I CMGCKG 1 cut(s) 659
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 2 cut(s) 345, 539
Mva1269I GAATGC 1 cut(s) 281
MvaI CCWGG 1 cut(s) 539
MvnI CGCG 1 cut(s) 458
MwoI GCNNNNNNNGC 4 cut(s) 126, 298, 311, 428
NarI GGCGCC 1 cut(s) 183
NciI CCSGG 1 cut(s) 345
NdeII GATC 1 cut(s) 93
NheI GCTAGC 1 cut(s) 301
NlaIII CATG 6 cut(s) 64, 68, 598, 619, 625, 632
NlaIV GGNNCC 3 cut(s) 112, 184, 231
NmuCI GTSAC 1 cut(s) 191
NsiI ATGCAT 1 cut(s) 66
NspI RCATGY 1 cut(s) 68
PaeI GCATGC 1 cut(s) 68
PceI AGGCCT 1 cut(s) 537
PctI GAATGC 1 cut(s) 281
PfoI TCCNGGA 1 cut(s) 343
PkrI GCNGC 6 cut(s) 128, 161, 280, 499, 611, 614
PleI GAGTC 1 cut(s) 537
PluTI GGCGCC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 537
PsiI TTATAA 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 537
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 3 cut(s) 112, 184, 231
PstI CTGCAG 1 cut(s) 499
PstNI CAGNNNCTG 1 cut(s) 433
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 3 cut(s) 37, 330, 664
RsaNI GTAC 3 cut(s) 36, 329, 663
RseI CAYNNNNRTG 3 cut(s) 69, 224, 620
SatI GCNGC 6 cut(s) 127, 160, 279, 498, 610, 613
Sau3AI GATC 1 cut(s) 93
SchI GAGTC 1 cut(s) 538
ScrFI CCNGG 2 cut(s) 345, 539
SetI ASST 6 cut(s) 34, 254, 272, 502, 511, 661
SfaNI GCATC 1 cut(s) 579
SfcI CTRYAG 1 cut(s) 495
SfoI GGCGCC 1 cut(s) 184
SmiMI CAYNNNNRTG 3 cut(s) 69, 224, 620
SmlI CTYRAG 2 cut(s) 187, 198
SmoI CTYRAG 2 cut(s) 187, 198
SphI GCATGC 1 cut(s) 68
Sse9I AATT 3 cut(s) 339, 480, 517
SseBI AGGCCT 1 cut(s) 537
SsiI CCGC 2 cut(s) 160, 278
SspDI GGCGCC 1 cut(s) 182
SspMI CTAG 2 cut(s) 302, 381
StuI AGGCCT 1 cut(s) 537
StyD4I CCNGG 2 cut(s) 343, 537
StyI CCWWGG 1 cut(s) 676
TaaI ACNGT 3 cut(s) 435, 451, 649
TaqI TCGA 1 cut(s) 78
TasI AATT 3 cut(s) 339, 480, 517
TatI WGTACW 1 cut(s) 35
TauI GCSGC 2 cut(s) 162, 281
TscAI CASTG 4 cut(s) 160, 438, 519, 652
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 4 cut(s) 126, 497, 609, 612
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 6 cut(s) 49, 182, 260, 274, 411, 583
TspGWI ACGGA 3 cut(s) 43, 309, 372
TspRI CASTG 4 cut(s) 160, 438, 519, 652
XapI RAATTY 1 cut(s) 517
XceI RCATGY 1 cut(s) 68
XspI CTAG 2 cut(s) 302, 381
Zsp2I ATGCAT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.