Rorug02G0543800

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000317
Physical Location & Seq
Reverse (-)
67259372 .. 67259936
565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0543800.1

Sequence Viewer

Length: 498 bp
ATGTTCTGGAGCGGTGATGTGAGGGTCCAGGAACGCTCTATGTCTGCCCACCATATTGATATGGTCATTGAAGGAGATCCGGGGGAGCCTAATTGGCGTTTGACTTGCTTTTATGGTTTTGCACGAACTGGAGACAGAGATAGATTGTGGCAGTTTCTCAAGGATCTCTGTGACCTTGACTCTTTGCCTTGGGTTGTTATTGGCGACTTTAATGAGATACTGAATAGCAGCGAGAAGATTGATGGGCCGGGTTCTTGGGGCCAATGTGTACTTGGTGGAACTTGGAGACGCAGTTACGGTTGGATAGGGCCATATGCACACCTTCATGGTGTGATATTTTTGGTCATGCCAGGCTGTGTCATCTTCCCCCCAGTGATTCAGACCATGTTCCAATTCTGCTACAGGCTAGTTCGGTGCCTCTGGTACAGCATTCACGCCATCATCGCTTCAAATTCGAAGCATAATGGCTGCAACATGCTGAATGTGATGGAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

165

Amino Acids

19.03

Weight (kDa)

6.03

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 414
AccBSI CCGCTC 1 cut(s) 12
AciI CCGC 1 cut(s) 12
AclWI GGATC 2 cut(s) 71, 171
AcsI RAATTY 1 cut(s) 451
AfaI GTAC 2 cut(s) 270, 425
AgsI TTSAA 2 cut(s) 71, 450
AjnI CCWGG 2 cut(s) 27, 349
Alw26I GTCTC 2 cut(s) 126, 280
AlwI GGATC 2 cut(s) 71, 171
AoxI GGCC 3 cut(s) 245, 259, 308
ApeKI GCWGC 2 cut(s) 228, 468
ApoI RAATTY 1 cut(s) 451
AspS9I GGNCC 4 cut(s) 25, 245, 259, 308
AsuC2I CCSGG 2 cut(s) 81, 249
AsuHPI GGTGA 1 cut(s) 26
AsuII TTCGAA 1 cut(s) 455
AvaII GGWCC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 414
BbvI GCAGC 2 cut(s) 240, 455
BccI CCATC 3 cut(s) 236, 446, 481
BciT130I CCWGG 2 cut(s) 29, 351
BcnI CCSGG 2 cut(s) 81, 249
BcoDI GTCTC 2 cut(s) 126, 280
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 400
BglI GCCNNNNNGGC 1 cut(s) 94
BisI GCNGC 2 cut(s) 229, 469
BlsI GCNGC 2 cut(s) 230, 470
Bme1390I CCNGG 4 cut(s) 29, 81, 249, 351
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 4 cut(s) 25, 245, 259, 308
BmiI GGNNCC 4 cut(s) 26, 87, 260, 416
BmrFI CCNGG 4 cut(s) 29, 81, 249, 351
BmrI ACTGGG 1 cut(s) 365
BmuI ACTGGG 1 cut(s) 365
BpmI CTGGAG 2 cut(s) 28, 150
Bpu14I TTCGAA 1 cut(s) 455
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 2 cut(s) 81, 249
BsaJI CCNNGG 2 cut(s) 80, 188
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bse1I ACTGG 2 cut(s) 133, 371
BseBI CCWGG 2 cut(s) 29, 351
BseDI CCNNGG 2 cut(s) 80, 188
BseNI ACTGG 2 cut(s) 133, 371
BseXI GCAGC 2 cut(s) 240, 455
BshFI GGCC 3 cut(s) 247, 261, 310
BshNI GGYRCC 1 cut(s) 414
BsiSI CCGG 2 cut(s) 80, 248
BsmAI GTCTC 2 cut(s) 126, 280
BsmBI CGTCTC 1 cut(s) 280
BsmI GAATGC 1 cut(s) 429
BsnI GGCC 3 cut(s) 247, 261, 310
Bsp119I TTCGAA 1 cut(s) 455
Bsp143I GATC 2 cut(s) 76, 163
BspACI CCGC 1 cut(s) 12
BspANI GGCC 3 cut(s) 247, 261, 310
BspLI GGNNCC 4 cut(s) 26, 87, 260, 416
BspPI GGATC 2 cut(s) 71, 171
BspT104I TTCGAA 1 cut(s) 455
BspT107I GGYRCC 1 cut(s) 414
BsrBI CCGCTC 1 cut(s) 12
BsrI ACTGG 2 cut(s) 133, 371
BssECI CCNNGG 2 cut(s) 80, 188
BssMI GATC 2 cut(s) 76, 163
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 2 cut(s) 29, 351
Bst4CI ACNGT 1 cut(s) 299
BstBI TTCGAA 1 cut(s) 455
BstKTI GATC 2 cut(s) 79, 166
BstMAI GTCTC 2 cut(s) 126, 280
BstMBI GATC 2 cut(s) 76, 163
BstMWI GCNNNNNNNGC 2 cut(s) 94, 443
BstNI CCWGG 2 cut(s) 29, 351
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 4 cut(s) 27, 79, 247, 349
BstSFI CTRYAG 1 cut(s) 400
BstV1I GCAGC 2 cut(s) 240, 455
BstX2I RGATCY 2 cut(s) 76, 163
BstYI RGATCY 2 cut(s) 76, 163
BsuRI GGCC 3 cut(s) 247, 261, 310
BtgZI GCGATG 1 cut(s) 427
BtsIMutI CAGTG 1 cut(s) 378
Cfr13I GGNCC 4 cut(s) 25, 245, 259, 308
CseI GACGC 1 cut(s) 297
Csp6I GTAC 2 cut(s) 269, 424
CviAII CATG 4 cut(s) 326, 346, 385, 475
CviJI RGCY 7 cut(s) 88, 247, 261, 310, 354, 406, 468
CviKI_1 RGCY 7 cut(s) 88, 247, 261, 310, 354, 406, 468
CviQI GTAC 2 cut(s) 269, 424
DpnI GATC 2 cut(s) 78, 165
DpnII GATC 2 cut(s) 76, 163
Eco130I CCWWGG 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 25
EcoRII CCWGG 2 cut(s) 27, 349
EcoT14I CCWWGG 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 188
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 4 cut(s) 329, 349, 388, 478
FatI CATG 4 cut(s) 325, 345, 384, 474
FauNDI CATATG 1 cut(s) 313
Fnu4HI GCNGC 2 cut(s) 229, 469
Fsp4HI GCNGC 2 cut(s) 229, 469
FspBI CTAG 1 cut(s) 407
GluI GCNGC 2 cut(s) 229, 469
GsuI CTGGAG 2 cut(s) 28, 150
HaeIII GGCC 3 cut(s) 247, 261, 310
HapII CCGG 2 cut(s) 80, 248
HgaI GACGC 1 cut(s) 297
Hin1II CATG 4 cut(s) 329, 349, 388, 478
HinfI GANTC 2 cut(s) 179, 376
HpaII CCGG 2 cut(s) 80, 248
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 1 cut(s) 381
Hpy188III TCNNGA 1 cut(s) 7
Hpy8I GTNNAC 1 cut(s) 269
HpyAV CCTTC 2 cut(s) 65, 332
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4V TGCA 3 cut(s) 122, 317, 471
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 443
Hsp92II CATG 4 cut(s) 329, 349, 388, 478
Kzo9I GATC 2 cut(s) 76, 163
LmnI GCTCC 2 cut(s) 9, 85
Lsp1109I GCAGC 2 cut(s) 240, 455
MaeI CTAG 1 cut(s) 407
MaeIII GTNAC 2 cut(s) 170, 293
MalI GATC 2 cut(s) 78, 165
MbiI CCGCTC 1 cut(s) 12
MboI GATC 2 cut(s) 76, 163
MboII GAAGA 2 cut(s) 247, 355
MflI RGATCY 2 cut(s) 76, 163
MluCI AATT 3 cut(s) 91, 392, 451
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 281
MnlI CCTC 2 cut(s) 15, 428
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 324
MspI CCGG 2 cut(s) 80, 248
MspR9I CCNGG 4 cut(s) 29, 81, 249, 351
Mva1269I GAATGC 1 cut(s) 429
MvaI CCWGG 2 cut(s) 29, 351
MwoI GCNNNNNNNGC 2 cut(s) 94, 443
NciI CCSGG 2 cut(s) 81, 249
NdeI CATATG 1 cut(s) 313
NdeII GATC 2 cut(s) 76, 163
NlaIII CATG 4 cut(s) 329, 349, 388, 478
NlaIV GGNNCC 4 cut(s) 26, 87, 260, 416
NmuCI GTSAC 1 cut(s) 170
NspI RCATGY 1 cut(s) 478
NspV TTCGAA 1 cut(s) 455
PctI GAATGC 1 cut(s) 429
PfeI GAWTC 1 cut(s) 376
PfoI TCCNGGA 1 cut(s) 27
PkrI GCNGC 2 cut(s) 230, 470
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Psp6I CCWGG 2 cut(s) 27, 349
PspGI CCWGG 2 cut(s) 27, 349
PspN4I GGNNCC 4 cut(s) 26, 87, 260, 416
PspPI GGNCC 4 cut(s) 25, 245, 259, 308
PsuI RGATCY 2 cut(s) 76, 163
RsaI GTAC 2 cut(s) 270, 425
RsaNI GTAC 2 cut(s) 269, 424
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 229, 469
Sau3AI GATC 2 cut(s) 76, 163
Sau96I GGNCC 4 cut(s) 25, 245, 259, 308
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 4 cut(s) 29, 81, 249, 351
SetI ASST 2 cut(s) 177, 324
SfcI CTRYAG 1 cut(s) 400
SfuI TTCGAA 1 cut(s) 455
SinI GGWCC 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 3 cut(s) 91, 392, 451
SsiI CCGC 1 cut(s) 12
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 4 cut(s) 27, 79, 247, 349
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 299
TaqI TCGA 1 cut(s) 455
TasI AATT 3 cut(s) 91, 392, 451
TatI WGTACW 1 cut(s) 268
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 378
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 2 cut(s) 228, 468
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 25
XapI RAATTY 1 cut(s) 451
XceI RCATGY 1 cut(s) 478
XcmI CCANNNNNNNNNTGG 1 cut(s) 269
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.