RchiOBHm_Chr2g0169801

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000317
Physical Location & Seq
Forward (+)
83926328 .. 83926711
384 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53737

Sequence Viewer

Length: 384 bp
ATGTTATTTGCTGAGACCGTGAGAGAGAACATTGTATATGGTGCATCAGATAAGATTGATGAAATGATGATCATCGAGGCTGCAAGGAGTGCCAATGCTCATGATTTTATCAGTGGATTAATCGACGGGTACAACACATTGTGTGGAGACAAAGGGGTGCAGCTATCTGGGGGACAAAAACAATGTATAGCAATAGCCAGGGCTATACTGAAAAAACCAGCAGTGTTGCTATTAGATGAAGCAACCAGTGCACTTGATAGTCAATCCGAGAAGGTATTGCAAGACTCGTTAGAGAGGTTGAGGTTCGGTAGGACTAATGTGGTTGTGGCTCACAGGTTAAGTACTATACAGAACTGTGAGCTCATTGTGGTGCTTGATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

127

Amino Acids

13.86

Weight (kDa)

5.33

Isoelectric Point (pI)

27.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 6 - 83 6.5e-11 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 141
AfaI GTAC 2 cut(s) 131, 343
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 2 cut(s) 163, 361
AluI AGCT 2 cut(s) 163, 361
Alw21I GWGCWC 2 cut(s) 253, 363
Alw26I GTCTC 2 cut(s) 8, 141
Alw44I GTGCAC 1 cut(s) 249
ApaLI GTGCAC 1 cut(s) 249
ApeKI GCWGC 2 cut(s) 80, 160
AseI ATTAAT 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 363
Bbv12I GWGCWC 2 cut(s) 253, 363
BbvI GCAGC 2 cut(s) 67, 172
BciT130I CCWGG 1 cut(s) 199
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 8, 141
BisI GCNGC 2 cut(s) 81, 161
BlsI GCNGC 2 cut(s) 82, 162
BmcAI AGTACT 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 1 cut(s) 53
BsaBI GATNNNNATC 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 198
Bse1I ACTGG 1 cut(s) 246
Bse8I GATNNNNATC 1 cut(s) 71
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 198
BseJI GATNNNNATC 1 cut(s) 71
BseNI ACTGG 1 cut(s) 246
BseSI GKGCMC 1 cut(s) 253
BseXI GCAGC 2 cut(s) 67, 172
BsgI GTGCAG 1 cut(s) 179
BsiHKAI GWGCWC 2 cut(s) 253, 363
BslFI GGGAC 1 cut(s) 186
BsmAI GTCTC 2 cut(s) 8, 141
BsmFI GGGAC 1 cut(s) 186
Bso31I GGTCTC 1 cut(s) 8
Bsp1286I GDGCHC 2 cut(s) 253, 363
Bsp143I GATC 1 cut(s) 69
BspCNI CTCAG 1 cut(s) 4
BspHI TCATGA 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 8
BsrI ACTGG 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 2 cut(s) 19, 356
BstAPI GCANNNNNTGC 2 cut(s) 89, 248
BstDEI CTNAG 1 cut(s) 12
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 2 cut(s) 8, 141
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 2 cut(s) 89, 248
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 197
BstSLI GKGCMC 1 cut(s) 253
BstV1I GCAGC 2 cut(s) 67, 172
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 3 cut(s) 118, 228, 253
CciI TCATGA 1 cut(s) 100
Csp6I GTAC 2 cut(s) 130, 342
CviAII CATG 1 cut(s) 101
CviJI RGCY 6 cut(s) 80, 163, 197, 203, 329, 361
CviKI_1 RGCY 6 cut(s) 80, 163, 197, 203, 329, 361
CviQI GTAC 2 cut(s) 130, 342
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
DraIII CACNNNGTG 1 cut(s) 141
Ecl136II GAGCTC 1 cut(s) 361
Eco24I GRGCYC 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 361
EcoICRI GAGCTC 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 197
EcoT38I GRGCYC 1 cut(s) 363
FaeI CATG 1 cut(s) 104
FaiI YATR 6 cut(s) 37, 39, 102, 188, 206, 347
FaqI GGGAC 1 cut(s) 186
FatI CATG 1 cut(s) 100
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 81, 161
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 2 cut(s) 81, 161
GluI GCNGC 2 cut(s) 81, 161
Hin1II CATG 1 cut(s) 104
HinfI GANTC 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 251
Hpy188I TCNGA 2 cut(s) 49, 268
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 1 cut(s) 251
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 2 cut(s) 19, 356
HpyCH4V TGCA 5 cut(s) 44, 83, 160, 251, 280
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 248
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 1 cut(s) 104
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 1 cut(s) 69
LpnPI CCDG 6 cut(s) 153, 184, 211, 231, 259, 319
Lsp1109I GCAGC 2 cut(s) 67, 172
LweI GCATC 1 cut(s) 53
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MhlI GDGCHC 2 cut(s) 253, 363
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 3 cut(s) 70, 288, 294
MseI TTAA 2 cut(s) 119, 338
MslI CAYNNNNRTG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 199
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 2 cut(s) 89, 248
NdeII GATC 1 cut(s) 69
NlaIII CATG 1 cut(s) 104
PagI TCATGA 1 cut(s) 100
PkrI GCNGC 2 cut(s) 82, 162
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
PshBI ATTAAT 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
RsaI GTAC 2 cut(s) 131, 343
RsaNI GTAC 2 cut(s) 130, 342
RseI CAYNNNNRTG 1 cut(s) 368
SacI GAGCTC 1 cut(s) 363
SaqAI TTAA 2 cut(s) 119, 338
SatI GCNGC 2 cut(s) 81, 161
Sau3AI GATC 1 cut(s) 69
ScaI AGTACT 1 cut(s) 343
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 2 cut(s) 253, 363
SetI ASST 6 cut(s) 165, 276, 299, 305, 338, 363
SfaNI GCATC 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 368
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 197
TaaI ACNGT 2 cut(s) 19, 356
TaqI TCGA 2 cut(s) 75, 123
TatI WGTACW 1 cut(s) 341
Tru1I TTAA 2 cut(s) 119, 338
Tru9I TTAA 2 cut(s) 119, 338
TscAI CASTG 3 cut(s) 118, 228, 253
TseI GCWGC 2 cut(s) 80, 160
TspDTI ATGAA 2 cut(s) 75, 252
TspRI CASTG 3 cut(s) 118, 228, 253
VneI GTGCAC 1 cut(s) 249
VspI ATTAAT 1 cut(s) 119
ZrmI AGTACT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.