RLG00000021905

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000317
Physical Location & Seq
Forward (+)
79170545 .. 79171549
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021905

Sequence Viewer

Length: 1005 bp
ATGCTAGAAAAGGTCCAAGAAGGCCCACATAGAGAAAGCTTACGACAATCGTGGTTTGCCGGTATTGGGCTCGGGTTTTCCATGAGCATTGCAATGCTTATTGCTGGTTTAAGCTATTGGTATGGCAGCATGCTCGTCTCCCAAGACTACCTCAAACCAAGATCAGCCTTTCAAACCATTCTCATTTTATTAGTCACGGGTCGGGTCATAGCAGATGCTGGAAGCATGACGTCGGACCTTACCAATGGCTGGGATGCAATTGGGTTAATTTTCAGTATGTTGGACCGAACCACAATAATCGAACCCCAAGTTCCAAAGGACTCCCAGGTTGAAAAACTAATGGGCGAGGTCCACTTTCGTGATGTGTACTTTGCATACCCGACTAGGCCCAATGTGATGATCTTCCGAGTCTTCTCAATGAATGTTGAAGCCGGAAAATCTACGGCATTGGTGGGGCAAAGTGGGTCGGGTAAATTAACCATTATCGGACTGATTGAGAGATTTTATGATCCAATCCAAGGCGTGGTGGAGATCGACGGTCATGATGTAAAGTTGTACCACCTTAGGTCATTGAGGAAACACATGGTATTGGTAAGCCAAGAACCTACATTATTTGCTGGGACCATAAGAGAAAACATTGTATTTGGAGCGTCAGATAACGTCGATGAAACTATGATCATTGAGGCAGCAAGGGCGGCCAATGCTCATGATTTCATCAGCAGGTTAAAGGACAGGTACAACACATCGTGTGGGGGTGGAGGATTGCAACTCTCTGGGGGTCAGAAGCAATGCATTGCTATAGCAAGAGCTATACTGAGAAACCCTGCAGTGTTGTTACTTGACGAGGCAACCAGCGCGCTAGATAGCCATTCAGAGAAGCTGGTTCAAGATCCACTGGATCATGTCATGGTGGGGAGGATCAGTGTCGTAGTGGCGCACAGGTTGAGTACCATACAGAACTGTGACCTCATTACTGTGCTTGATAAAGGAAAGGTAGTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

335

Amino Acids

36.72

Weight (kDa)

6.51

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 138 - 285 5.1e-29 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 233
Acc36I ACCTGC 1 cut(s) 711
AccB7I CCANNNNNTGG 2 cut(s) 249, 523
AccII CGCG 1 cut(s) 857
AciI CCGC 1 cut(s) 695
AclWI GGATC 4 cut(s) 503, 884, 906, 926
AcoI YGGCCR 1 cut(s) 696
AcyI GRCGYC 1 cut(s) 230
AdeI CACNNNGTG 1 cut(s) 747
AfaI GTAC 4 cut(s) 368, 557, 737, 949
AfiI CCNNNNNNNGG 4 cut(s) 66, 249, 518, 523
AgsI TTSAA 4 cut(s) 173, 332, 428, 887
AjnI CCWGG 1 cut(s) 324
AleI CACNNNNGTG 1 cut(s) 357
AluBI AGCT 4 cut(s) 39, 114, 809, 880
AluI AGCT 4 cut(s) 39, 114, 809, 880
Alw26I GTCTC 1 cut(s) 142
AlwI GGATC 4 cut(s) 503, 884, 906, 926
AlwNI CAGNNNCTG 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 3 cut(s) 22, 386, 696
ApeKI GCWGC 2 cut(s) 126, 686
AspLEI GCGC 3 cut(s) 857, 859, 937
AspS9I GGNCC 7 cut(s) 13, 23, 235, 283, 349, 387, 621
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 5 cut(s) 13, 235, 283, 349, 621
AxyI CCTNAGG 1 cut(s) 563
BanII GRGCYC 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 403
BbvI GCAGC 2 cut(s) 138, 698
BceAI ACGGC 1 cut(s) 459
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 1 cut(s) 326
BclI TGATCA 1 cut(s) 675
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 3 cut(s) 5, 384, 860
BfmI CTRYAG 2 cut(s) 798, 825
BfuAI ACCTGC 1 cut(s) 711
BisI GCNGC 3 cut(s) 127, 687, 696
BlsI GCNGC 3 cut(s) 128, 688, 697
Bme1390I CCNGG 1 cut(s) 326
Bme18I GGWCC 5 cut(s) 13, 235, 283, 349, 621
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 7 cut(s) 13, 23, 235, 283, 349, 387, 621
BmiI GGNNCC 1 cut(s) 622
BmrFI CCNGG 1 cut(s) 326
BmsI GCATC 2 cut(s) 205, 244
BpiI GAAGAC 1 cut(s) 403
BsaHI GRCGYC 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 324, 517
BsaXI ACNNNNNCTCC 2 cut(s) 907, 937
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 249, 518, 523
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 900
Bse21I CCTNAGG 1 cut(s) 563
Bse3DI GCAATG 4 cut(s) 87, 99, 792, 794
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 2 cut(s) 324, 517
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 4 cut(s) 66, 249, 518, 523
BseMI GCAATG 4 cut(s) 87, 99, 792, 794
BseMII CTCAG 1 cut(s) 806
BseNI ACTGG 1 cut(s) 900
BsePI GCGCGC 1 cut(s) 855
BseXI GCAGC 2 cut(s) 138, 698
BseYI CCCAGC 2 cut(s) 249, 617
Bsh1236I CGCG 1 cut(s) 857
BshFI GGCC 3 cut(s) 24, 388, 698
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 2 cut(s) 60, 432
BslFI GGGAC 1 cut(s) 634
BslI CCNNNNNNNGG 4 cut(s) 66, 249, 518, 523
BsmAI GTCTC 1 cut(s) 142
BsmBI CGTCTC 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 634
BsnI GGCC 3 cut(s) 24, 388, 698
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 8 cut(s) 161, 399, 508, 531, 675, 889, 898, 918
BspACI CCGC 1 cut(s) 695
BspANI GGCC 3 cut(s) 24, 388, 698
BspCNI CTCAG 1 cut(s) 807
BspFNI CGCG 1 cut(s) 857
BspHI TCATGA 2 cut(s) 541, 706
BspLI GGNNCC 1 cut(s) 622
BspMAI CTGCAG 1 cut(s) 829
BspMI ACCTGC 1 cut(s) 711
BspPI GGATC 4 cut(s) 503, 884, 906, 926
BsrDI GCAATG 4 cut(s) 87, 99, 792, 794
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 1 cut(s) 900
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 324, 517
BssHII GCGCGC 1 cut(s) 855
BssMI GATC 8 cut(s) 161, 399, 508, 531, 675, 889, 898, 918
BssNI GRCGYC 1 cut(s) 230
BssT1I CCWWGG 1 cut(s) 517
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 3 cut(s) 539, 962, 976
BstACI GRCGYC 1 cut(s) 230
BstC8I GCNNGC 2 cut(s) 131, 857
BstDEI CTNAG 2 cut(s) 563, 815
BstF5I GGATG 1 cut(s) 259
BstFNI CGCG 1 cut(s) 857
BstHHI GCGC 3 cut(s) 857, 859, 937
BstKTI GATC 8 cut(s) 164, 402, 511, 534, 678, 892, 901, 921
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 8 cut(s) 161, 399, 508, 531, 675, 889, 898, 918
BstMWI GCNNNNNNNGC 4 cut(s) 692, 695, 701, 854
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 324
BstSFI CTRYAG 2 cut(s) 798, 825
BstUI CGCG 1 cut(s) 857
BstV1I GCAGC 2 cut(s) 138, 698
BstV2I GAAGAC 1 cut(s) 403
BstX2I RGATCY 1 cut(s) 889
BstYI RGATCY 1 cut(s) 889
Bsu36I CCTNAGG 1 cut(s) 563
BsuRI GGCC 3 cut(s) 24, 388, 698
BtsCI GGATG 1 cut(s) 259
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 3 cut(s) 834, 893, 928
BveI ACCTGC 1 cut(s) 711
Cac8I GCNNGC 2 cut(s) 131, 857
CaiI CAGNNNCTG 1 cut(s) 218
CciI TCATGA 2 cut(s) 541, 706
CfoI GCGC 3 cut(s) 857, 859, 937
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 7 cut(s) 13, 23, 235, 283, 349, 387, 621
CseI GACGC 1 cut(s) 639
Csp6I GTAC 4 cut(s) 367, 556, 736, 948
CviAII CATG 8 cut(s) 82, 130, 226, 542, 583, 707, 902, 907
CviQI GTAC 4 cut(s) 367, 556, 736, 948
DdeI CTNAG 2 cut(s) 563, 815
DpnI GATC 8 cut(s) 163, 401, 510, 533, 677, 891, 900, 920
DpnII GATC 8 cut(s) 161, 399, 508, 531, 675, 889, 898, 918
DraIII CACNNNGTG 1 cut(s) 747
EaeI YGGCCR 1 cut(s) 696
Eco130I CCWWGG 1 cut(s) 517
Eco24I GRGCYC 1 cut(s) 72
Eco47I GGWCC 5 cut(s) 13, 235, 283, 349, 621
Eco81I CCTNAGG 1 cut(s) 563
Eco88I CYCGRG 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 517
EcoT22I ATGCAT 1 cut(s) 794
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 517
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 8 cut(s) 85, 133, 229, 545, 586, 710, 905, 910
FaqI GGGAC 1 cut(s) 634
FatI CATG 8 cut(s) 81, 129, 225, 541, 582, 706, 901, 906
FbaI TGATCA 1 cut(s) 675
Fnu4HI GCNGC 3 cut(s) 127, 687, 696
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 3 cut(s) 127, 687, 696
FspBI CTAG 3 cut(s) 5, 384, 860
GlaI GCGC 3 cut(s) 856, 858, 936
GluI GCNGC 3 cut(s) 127, 687, 696
GsaI CCCAGC 2 cut(s) 253, 621
HaeIII GGCC 3 cut(s) 24, 388, 698
HapII CCGG 2 cut(s) 60, 432
HgaI GACGC 1 cut(s) 639
HhaI GCGC 3 cut(s) 857, 859, 937
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 8 cut(s) 85, 133, 229, 545, 586, 710, 905, 910
Hin6I GCGC 3 cut(s) 855, 857, 935
HinP1I GCGC 3 cut(s) 855, 857, 935
HindIII AAGCTT 1 cut(s) 37
HinfI GANTC 2 cut(s) 320, 408
HpaII CCGG 2 cut(s) 60, 432
Hpy166II GTNNAC 2 cut(s) 352, 367
Hpy188I TCNGA 6 cut(s) 235, 407, 488, 655, 783, 874
Hpy188III TCNNGA 4 cut(s) 359, 542, 707, 887
Hpy8I GTNNAC 2 cut(s) 352, 367
Hpy99I CGWCG 3 cut(s) 235, 539, 665
HpyAV CCTTC 1 cut(s) 14
HpyCH4III ACNGT 3 cut(s) 539, 962, 976
HpyCH4IV ACGT 2 cut(s) 230, 660
HpyCH4V TGCA 6 cut(s) 92, 257, 374, 766, 792, 827
HpyF10VI GCNNNNNNNGC 4 cut(s) 692, 695, 701, 854
HpyF3I CTNAG 2 cut(s) 563, 815
HpySE526I ACGT 2 cut(s) 230, 660
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 8 cut(s) 85, 133, 229, 545, 586, 710, 905, 910
HspAI GCGC 3 cut(s) 855, 857, 935
Ksp22I TGATCA 1 cut(s) 675
Kzo9I GATC 8 cut(s) 161, 399, 508, 531, 675, 889, 898, 918
LmnI GCTCC 1 cut(s) 647
Lsp1109I GCAGC 2 cut(s) 138, 698
LweI GCATC 2 cut(s) 205, 244
MaeI CTAG 3 cut(s) 5, 384, 860
MaeII ACGT 2 cut(s) 230, 660
MaeIII GTNAC 3 cut(s) 193, 834, 962
MalI GATC 8 cut(s) 163, 401, 510, 533, 677, 891, 900, 920
MboI GATC 8 cut(s) 161, 399, 508, 531, 675, 889, 898, 918
MboII GAAGA 2 cut(s) 394, 403
MfeI CAATTG 1 cut(s) 258
MflI RGATCY 1 cut(s) 889
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 3 cut(s) 258, 267, 473
MlyI GAGTC 2 cut(s) 314, 417
MmeI TCCRAC 2 cut(s) 213, 261
MnlI CCTC 8 cut(s) 161, 340, 567, 676, 752, 838, 909, 977
Mph1103I ATGCAT 1 cut(s) 794
MseI TTAA 4 cut(s) 110, 266, 476, 725
MslI CAYNNNNRTG 3 cut(s) 92, 357, 974
MspI CCGG 2 cut(s) 60, 432
MspR9I CCNGG 1 cut(s) 326
MunI CAATTG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 326
MvnI CGCG 1 cut(s) 857
MwoI GCNNNNNNNGC 4 cut(s) 692, 695, 701, 854
NdeII GATC 8 cut(s) 161, 399, 508, 531, 675, 889, 898, 918
NlaIII CATG 8 cut(s) 85, 133, 229, 545, 586, 710, 905, 910
NlaIV GGNNCC 1 cut(s) 622
NmuCI GTSAC 2 cut(s) 193, 962
NsiI ATGCAT 1 cut(s) 794
NspI RCATGY 1 cut(s) 133
OliI CACNNNNGTG 1 cut(s) 357
PaeI GCATGC 1 cut(s) 133
PagI TCATGA 2 cut(s) 541, 706
PauI GCGCGC 1 cut(s) 855
PflMI CCANNNNNTGG 2 cut(s) 249, 523
PkrI GCNGC 3 cut(s) 128, 688, 697
PleI GAGTC 2 cut(s) 314, 416
PpsI GAGTC 2 cut(s) 314, 416
Psp6I CCWGG 1 cut(s) 324
PspFI CCCAGC 2 cut(s) 249, 617
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 622
PspPI GGNCC 7 cut(s) 13, 23, 235, 283, 349, 387, 621
PstI CTGCAG 1 cut(s) 829
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 1 cut(s) 889
PteI GCGCGC 1 cut(s) 855
RsaI GTAC 4 cut(s) 368, 557, 737, 949
RsaNI GTAC 4 cut(s) 367, 556, 736, 948
RseI CAYNNNNRTG 3 cut(s) 92, 357, 974
SaqAI TTAA 4 cut(s) 110, 266, 476, 725
SatI GCNGC 3 cut(s) 127, 687, 696
Sau3AI GATC 8 cut(s) 161, 399, 508, 531, 675, 889, 898, 918
Sau96I GGNCC 7 cut(s) 13, 23, 235, 283, 349, 387, 621
SchI GAGTC 2 cut(s) 314, 417
ScrFI CCNGG 1 cut(s) 326
SduI GDGCHC 1 cut(s) 72
SfaNI GCATC 2 cut(s) 205, 244
SfcI CTRYAG 2 cut(s) 798, 825
SinI GGWCC 5 cut(s) 13, 235, 283, 349, 621
SmiMI CAYNNNNRTG 3 cut(s) 92, 357, 974
SphI GCATGC 1 cut(s) 133
Sse9I AATT 3 cut(s) 258, 267, 473
SsiI CCGC 1 cut(s) 695
SspMI CTAG 3 cut(s) 5, 384, 860
StyD4I CCNGG 1 cut(s) 324
StyI CCWWGG 1 cut(s) 517
TaaI ACNGT 3 cut(s) 539, 962, 976
TaiI ACGT 2 cut(s) 233, 663
TaqI TCGA 3 cut(s) 300, 534, 663
TaqII GACCGA 1 cut(s) 300
TasI AATT 3 cut(s) 258, 267, 473
TatI WGTACW 1 cut(s) 366
TauI GCSGC 1 cut(s) 698
Tru1I TTAA 4 cut(s) 110, 266, 476, 725
Tru9I TTAA 4 cut(s) 110, 266, 476, 725
TscAI CASTG 3 cut(s) 834, 900, 928
TseFI GTSAC 2 cut(s) 193, 962
TseI GCWGC 2 cut(s) 126, 686
Tsp45I GTSAC 2 cut(s) 193, 962
TspDTI ATGAA 3 cut(s) 434, 681, 703
TspRI CASTG 3 cut(s) 834, 900, 928
Van91I CCANNNNNTGG 2 cut(s) 249, 523
VpaK11BI GGWCC 5 cut(s) 13, 235, 283, 349, 621
XceI RCATGY 1 cut(s) 133
XspI CTAG 3 cut(s) 5, 384, 860
ZraI GACGTC 1 cut(s) 231
Zsp2I ATGCAT 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.