Rh2DG638700

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000317
Physical Location & Seq
Forward (+)
86655917 .. 86657531
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG638700.1

Sequence Viewer

Length: 969 bp
ATGTCTTTCTTCTACTTGGCTTGTGCATCATGGCTTACTTGTTTCCTAGAGGGGTTTTATTGGACAAGAACTGGGGAGAGACAAGCTGCAAAAATGAGAACAAAGTATTTGAAAGCGGTGTTACGCCAAGAGGTAGCTTACTTAGATTCACATCAAACAAGCGCCTCTGAGGTTGTAATGAGCATGTCAAATGACATTCAGATCATTCAAGATGTTCTCAGTGAAAAGGTGCCAGACTTCTTAACTAGAGTCTCTAGTTGCAAGTTACGCGATACCATTTGTATTGATGTGGGAACTGGCTTTGGTTGGACTCCCTTTTATATTACTTCTGGTAGCAGAATGGTTATATACCATGGTGCTCTAGGAGGGACTGTTTTTGCTGTTGGTGTTTCACTGGTCAGTGGAGCAATGGCAATGGGTTTTGCTTTATCAAACTTAAAGTACATTGCAGAAGCATGCTCAGCTGAAGAGAATCTCATGAAGGTTATCAATCGAGTTCCTGAAATTGATTTAGATAACATGGAAGGCACAGTTCTGGAGGATGTCTCGAGTGAAGTCCAATTTAATCATGTTAAGTTTGCATATCCATCCAGGCCTGAGAGCATTATTCTGAACAACTTTTCTCTAACCATACCAGCCGGAAAGACTGTTGCCTTGGTTGGCTCAAGTGGATCAGGAAAATCAACAGTGACGTTACCGATGGAAAGATTTTATGACCCACTTGAGGGACAAATTCTACTAGATGGGTTTGCCATTGACAAGTTACAGCTCAAGTGGCTAAGGTCTAAAATGGCATCCGTAAGCCAAGAGCCTTCATTGTTCTCAACCACCATTAAGGAGAATATACTTTTCGGCAAGGAGGATGGCACAATGGAGGAAGTAGTTGAGGCTGCCAAGGCTAGCAATGCTCATAATTTCATATGTCAGTTGCCTCATGGGTATGACACCCAGGTTTGTCCTGCTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

322

Amino Acids

35.47

Weight (kDa)

5.24

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 2 - 86 4.5e-16 ABC transporter transmembrane region
ABC_tran PF00005 204 - 307 1.7e-17 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AccII CGCG 1 cut(s) 270
AciI CCGC 1 cut(s) 116
AclWI GGATC 1 cut(s) 679
AcsI RAATTY 1 cut(s) 732
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 2 cut(s) 724, 725
AgsI TTSAA 2 cut(s) 112, 209
AjnI CCWGG 2 cut(s) 590, 948
AluBI AGCT 4 cut(s) 86, 137, 464, 769
AluI AGCT 4 cut(s) 86, 137, 464, 769
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 3 cut(s) 73, 256, 550
AlwI GGATC 1 cut(s) 679
Ama87I CYCGRG 1 cut(s) 547
AoxI GGCC 1 cut(s) 593
ApeKI GCWGC 2 cut(s) 86, 890
ApoI RAATTY 1 cut(s) 732
AspLEI GCGC 1 cut(s) 164
AsuNHI GCTAGC 1 cut(s) 899
AvaI CYCGRG 1 cut(s) 547
BanI GGYRCC 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 361
BbvI GCAGC 2 cut(s) 73, 877
BccI CCATC 4 cut(s) 595, 694, 737, 857
BciT130I CCWGG 2 cut(s) 592, 950
BcoDI GTCTC 3 cut(s) 73, 256, 550
BfaI CTAG 7 cut(s) 47, 246, 255, 362, 740, 900, 967
BfoI RGCGCY 1 cut(s) 165
BisI GCNGC 2 cut(s) 87, 891
BlpI GCTNAGC 1 cut(s) 460
BlsI GCNGC 2 cut(s) 88, 892
Bme1390I CCNGG 2 cut(s) 592, 950
BmeT110I CYCGRG 1 cut(s) 547
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 2 cut(s) 592, 950
BmrI ACTGGG 1 cut(s) 81
BmsI GCATC 2 cut(s) 35, 803
BmtI GCTAGC 1 cut(s) 903
BmuI ACTGGG 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 530, 562
BpmI CTGGAG 1 cut(s) 557
Bpu10I CCTNAGC 1 cut(s) 779
Bpu1102I GCTNAGC 1 cut(s) 460
BpuEI CTTGAG 3 cut(s) 649, 743, 755
BsaBI GATNNNNATC 1 cut(s) 150
BsaJI CCNNGG 4 cut(s) 352, 654, 894, 948
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bsc4I CCNNNNNNNGG 2 cut(s) 724, 725
Bse1I ACTGG 3 cut(s) 76, 301, 399
Bse3DI GCAATG 4 cut(s) 414, 420, 444, 910
Bse8I GATNNNNATC 1 cut(s) 150
BseBI CCWGG 2 cut(s) 592, 950
BseDI CCNNGG 4 cut(s) 352, 654, 894, 948
BseGI GGATG 4 cut(s) 547, 587, 794, 868
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 724, 725
BseMI GCAATG 4 cut(s) 414, 420, 444, 910
BseMII CTCAG 4 cut(s) 159, 232, 474, 588
BseNI ACTGG 3 cut(s) 76, 301, 399
BseXI GCAGC 2 cut(s) 73, 877
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 1 cut(s) 595
BshNI GGYRCC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 547
BsiSI CCGG 1 cut(s) 639
BslFI GGGAC 2 cut(s) 382, 741
BslI CCNNNNNNNGG 2 cut(s) 724, 725
BsmAI GTCTC 3 cut(s) 73, 256, 550
BsmFI GGGAC 2 cut(s) 382, 741
BsnI GGCC 1 cut(s) 595
BsoBI CYCGRG 1 cut(s) 547
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 2 cut(s) 201, 671
Bsp1720I GCTNAGC 1 cut(s) 460
Bsp19I CCATGG 1 cut(s) 352
BspACI CCGC 1 cut(s) 116
BspANI GGCC 1 cut(s) 595
BspCNI CTCAG 4 cut(s) 160, 231, 473, 589
BspFNI CGCG 1 cut(s) 270
BspHI TCATGA 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 231
BspOI GCTAGC 1 cut(s) 903
BspPI GGATC 1 cut(s) 679
BspT107I GGYRCC 1 cut(s) 229
BsrDI GCAATG 4 cut(s) 414, 420, 444, 910
BsrI ACTGG 3 cut(s) 76, 301, 399
BssECI CCNNGG 4 cut(s) 352, 654, 894, 948
BssMI GATC 2 cut(s) 201, 671
BssT1I CCWWGG 3 cut(s) 352, 654, 894
Bst2UI CCWGG 2 cut(s) 592, 950
Bst4CI ACNGT 4 cut(s) 373, 532, 649, 688
Bst6I CTCTTC 1 cut(s) 462
BstC8I GCNNGC 2 cut(s) 457, 901
BstDEI CTNAG 6 cut(s) 142, 168, 218, 460, 597, 779
BstDSI CCRYGG 1 cut(s) 352
BstF5I GGATG 4 cut(s) 547, 587, 794, 868
BstFNI CGCG 1 cut(s) 270
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 2 cut(s) 204, 674
BstMAI GTCTC 3 cut(s) 73, 256, 550
BstMBI GATC 2 cut(s) 201, 671
BstMWI GCNNNNNNNGC 5 cut(s) 267, 461, 775, 896, 905
BstNI CCWGG 2 cut(s) 592, 950
BstNSI RCATGY 2 cut(s) 187, 459
BstSCI CCNGG 2 cut(s) 590, 948
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 2 cut(s) 73, 877
BsuRI GGCC 1 cut(s) 595
BtgI CCRYGG 1 cut(s) 352
BtsCI GGATG 4 cut(s) 547, 587, 794, 868
BtsIMutI CAGTG 4 cut(s) 226, 392, 406, 693
Cac8I GCNNGC 2 cut(s) 457, 901
CciI TCATGA 1 cut(s) 477
CfoI GCGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 442
CviAII CATG 8 cut(s) 30, 184, 353, 456, 478, 520, 569, 935
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 6 cut(s) 142, 168, 218, 460, 597, 779
DpnI GATC 2 cut(s) 203, 673
DpnII GATC 2 cut(s) 201, 671
Eam1104I CTCTTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 462
Eco130I CCWWGG 3 cut(s) 352, 654, 894
Eco147I AGGCCT 1 cut(s) 595
Eco57I CTGAAG 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 547
EcoRII CCWGG 2 cut(s) 590, 948
EcoT14I CCWWGG 3 cut(s) 352, 654, 894
ErhI CCWWGG 3 cut(s) 352, 654, 894
FaeI CATG 8 cut(s) 33, 187, 356, 459, 481, 523, 572, 938
FaqI GGGAC 2 cut(s) 382, 741
FatI CATG 8 cut(s) 29, 183, 352, 455, 477, 519, 568, 934
FauNDI CATATG 1 cut(s) 920
Fnu4HI GCNGC 2 cut(s) 87, 891
FokI GGATG 4 cut(s) 554, 574, 781, 875
Fsp4HI GCNGC 2 cut(s) 87, 891
FspBI CTAG 7 cut(s) 47, 246, 255, 362, 740, 900, 967
GlaI GCGC 1 cut(s) 163
GluI GCNGC 2 cut(s) 87, 891
GsuI CTGGAG 1 cut(s) 557
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 1 cut(s) 595
HapII CCGG 1 cut(s) 639
HhaI GCGC 1 cut(s) 164
Hin1II CATG 8 cut(s) 33, 187, 356, 459, 481, 523, 572, 938
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HinfI GANTC 4 cut(s) 146, 249, 310, 472
HpaII CCGG 1 cut(s) 639
Hpy188I TCNGA 3 cut(s) 169, 201, 612
Hpy188III TCNNGA 6 cut(s) 209, 478, 500, 536, 547, 675
HpyAV CCTTC 3 cut(s) 475, 518, 822
HpyCH4III ACNGT 4 cut(s) 373, 532, 649, 688
HpyCH4IV ACGT 1 cut(s) 692
HpyCH4V TGCA 5 cut(s) 26, 89, 261, 449, 581
HpyF10VI GCNNNNNNNGC 5 cut(s) 267, 461, 775, 896, 905
HpyF3I CTNAG 6 cut(s) 142, 168, 218, 460, 597, 779
HpySE526I ACGT 1 cut(s) 692
Hsp92II CATG 8 cut(s) 33, 187, 356, 459, 481, 523, 572, 938
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 201, 671
LmnI GCTCC 1 cut(s) 404
Lsp1109I GCAGC 2 cut(s) 73, 877
LweI GCATC 2 cut(s) 35, 803
MaeI CTAG 7 cut(s) 47, 246, 255, 362, 740, 900, 967
MaeII ACGT 1 cut(s) 692
MaeIII GTNAC 5 cut(s) 120, 264, 688, 693, 762
MalI GATC 2 cut(s) 203, 673
MboI GATC 2 cut(s) 201, 671
MboII GAAGA 1 cut(s) 479
MhlI GDGCHC 1 cut(s) 361
MluCI AATT 4 cut(s) 504, 560, 732, 913
MlyI GAGTC 2 cut(s) 258, 304
MmeI TCCRAC 1 cut(s) 287
MseI TTAA 5 cut(s) 242, 437, 564, 573, 834
MslI CAYNNNNRTG 1 cut(s) 939
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 1 cut(s) 639
MspR9I CCNGG 2 cut(s) 592, 950
MvaI CCWGG 2 cut(s) 592, 950
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 5 cut(s) 267, 461, 775, 896, 905
NcoI CCATGG 1 cut(s) 352
NdeI CATATG 1 cut(s) 920
NdeII GATC 2 cut(s) 201, 671
NheI GCTAGC 1 cut(s) 899
NlaIII CATG 8 cut(s) 33, 187, 356, 459, 481, 523, 572, 938
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 688
NspI RCATGY 2 cut(s) 187, 459
PaeI GCATGC 1 cut(s) 459
PaeR7I CTCGAG 1 cut(s) 547
PagI TCATGA 1 cut(s) 477
PceI AGGCCT 1 cut(s) 595
PfeI GAWTC 2 cut(s) 146, 472
PkrI GCNGC 2 cut(s) 88, 892
PleI GAGTC 2 cut(s) 257, 304
PpsI GAGTC 2 cut(s) 257, 304
Psp6I CCWGG 2 cut(s) 590, 948
PspGI CCWGG 2 cut(s) 590, 948
PspN4I GGNNCC 1 cut(s) 231
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
RseI CAYNNNNRTG 1 cut(s) 939
SaqAI TTAA 5 cut(s) 242, 437, 564, 573, 834
SatI GCNGC 2 cut(s) 87, 891
Sau3AI GATC 2 cut(s) 201, 671
SchI GAGTC 2 cut(s) 258, 304
ScrFI CCNGG 2 cut(s) 592, 950
SduI GDGCHC 1 cut(s) 361
SfaNI GCATC 2 cut(s) 35, 803
Sfr274I CTCGAG 1 cut(s) 547
SlaI CTCGAG 1 cut(s) 547
SmiMI CAYNNNNRTG 1 cut(s) 939
SmlI CTYRAG 4 cut(s) 547, 664, 722, 770
SmoI CTYRAG 4 cut(s) 547, 664, 722, 770
SphI GCATGC 1 cut(s) 459
Sse9I AATT 4 cut(s) 504, 560, 732, 913
SseBI AGGCCT 1 cut(s) 595
SsiI CCGC 1 cut(s) 116
SspMI CTAG 7 cut(s) 47, 246, 255, 362, 740, 900, 967
StuI AGGCCT 1 cut(s) 595
StyD4I CCNGG 2 cut(s) 590, 948
StyI CCWWGG 3 cut(s) 352, 654, 894
TaaI ACNGT 4 cut(s) 373, 532, 649, 688
TaiI ACGT 1 cut(s) 695
TaqI TCGA 2 cut(s) 493, 548
TasI AATT 4 cut(s) 504, 560, 732, 913
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 2 cut(s) 146, 472
Tru1I TTAA 5 cut(s) 242, 437, 564, 573, 834
Tru9I TTAA 5 cut(s) 242, 437, 564, 573, 834
TscAI CASTG 4 cut(s) 226, 399, 406, 693
TseFI GTSAC 1 cut(s) 688
TseI GCWGC 2 cut(s) 86, 890
Tsp45I GTSAC 1 cut(s) 688
TspDTI ATGAA 3 cut(s) 494, 804, 907
TspGWI ACGGA 1 cut(s) 787
TspRI CASTG 4 cut(s) 226, 399, 406, 693
XapI RAATTY 1 cut(s) 732
XceI RCATGY 2 cut(s) 187, 459
XhoI CTCGAG 1 cut(s) 547
XspI CTAG 7 cut(s) 47, 246, 255, 362, 740, 900, 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.