Rroxscaffold_2G00149710

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000317
Physical Location & Seq
Forward (+)
87223167 .. 87229218
6052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00149710.1

Sequence Viewer

Length: 3660 bp
ATGCGTCAACTTTCTTCTTCTTTTTCTTCCTTTTCAAATTATCTAGACGGACCAGTACTAGCTAGCTTAATTTGCACAGTGTGTTTGAGAAGCAAAATGAGTTCTCCGGAGAAGAATGAGAACCATGGGAAAGAAGAGAAGAAATCCGCAGATTCAGTATTCAAAATTTTCAGATATGCTGATTGGGTTGATGTTGTGCTAATGGTTTTTGGAACCATCGGAGCTATCGGAGATGGCATGTCTACTAACTGTTTGCTGCTATTTGCCAGCCGTCTTATGAACAACTTGGGGTACGGTCAGAATCAGACCCAACAGAATAATAATCATGGCAATTGGATGGACGAGGTTGAAAAGTGCAGTTTATACTTTGTATACTTGGGATTAGCAGTAATGCTGGTGGCTTTTTTGGAAGGCTATTGTTGGAGCAAAACCAGTGAGAGGCAGGTGCTGAAGATTCGTTACAAGTACTTGGAAGCTGTTCTTAGACAAGAAGTTGGGTTTTTCGATTCACAAGAAGCAACTACTTCGGAGGTGATCAACAGTATATCAAAAGATACTTCTCATTTACAGGAAGTTCTGAGTGAAAAGGTGCCGATATTTTTTATGCACTCGTCAGTGTTCGTCTCCGGGCTTGCTTTCTCCACCTTCTTGTCTTGGAGACTATCCTTAGTAGCATTTCCAACACTTCTTCTCCTGATCATACCCGGAATGATCTATGGGAAATATCTTCTTTATTTGTCTAAACAGTCATACACAGAGTATGGAAAAGCAAACACCATTGTAGAGCAAGCTCTGAGCTCCATCAAAACCGTCTATTCGTTCACGGCTGAGAGGACAATTTTGGAGAGGTACTCAGCAGTATTGGAGAGAACAATCAGGCTGGGGATCAAGCAAGGGATTGCAAAAGGTCTTGCTGTAGGAAGCACAGGGCTGTCTTTTGCAATATGGGCATTTCTGGCTTGGTATGGAAGCCATTTGGTGATGTATAAAGGTGAAAGTGGTGGTAGGATCTATGCTGCTGGCATCTCCTTCGTACTGAGTGGACTATCCTTGGGAATGGCACTTCCAGATTTGAGGCACTTTACAGAAGCTTCCATTGCTGCATCACGCATATTTGATAGGATTGACCGAAAACCATTGATTGATGGTGAAGACATAAAAGGACTTGTCTTGGACAACATTAGAGGCGAAGTAGAATTCATAGATGTCAGATTCACATACCCTTCTCGTCCGGATTCCATTGTCCTCAAAGACTTCAATCTCAAAGTTGAAGCAGGGAAGACAATTGCACTTGTTGGTGCCAGCGGAAGTGGCAAATCCACAGCAATTGCATTGGTACAACGCTTTTATGATGCAGATGGGGGAGTTGTTCGAATTGATGGTGTCGATATAAAGACACTTCAATTGAAGTGGATAAGATCCCAAATGGGACTTGTTAGTCAAGAACATGCTTTGTTTGGTACATCAATAAAGGAAAATATCATGTTTGGGAAACTTGATGCCAATATGGATGAAGTCACAGCTGCTGCTATGGCTGCCAATGCTCACAATTTCATAAGGCAGCTTCCTGAAGGGTATGAGACCAAGGTGGTAGCTCACAAGCTTTCTACAGTTCGAAATGCAGACCTCATTGCGGTGGTCAGTGGGGGTTGCATCATCGAAATAGGCTCACACAACGACCTCATCAACCGTCAAAATGGGCAGTATGCAAAGCTAGCAAAGATGCAGAGACAGTTCAGCACCTTTGACAATGTAGACCAAGACCAAAATTCAGATACACGGTTGTCTTCGGTTGCAAGAAGCAGTGCTGGCAGGTTAAGCACCGCAAGATCAAGCCCTGCTATGTTTGCAAAATCACCACTAGCTATTGAGACCCCAGAATCTGTAGTGTCTCATCCCCCAACCTCCTTCTACCGCCTTCTCTCTTTAAACTCCCCTGAATGGAAGCAAGGCCTAATTGGAAGCCTCTCAGCGATAGCCTTTGGCTCAGTCCAACCTATCTATGCCCTCACCGTGGGTGGTATGATATCAGCTTTCTTTGTGCAAAGCCATGAGGAAATGCGTGCACGAATTCGAACATATTCATTGATTTTCTCTGCACTTTCCTTAATCTCCATGACATTGAATCTTTTGCAACATTATAATTTTGCTTATATGGGTGAGCAGCTCACGAAAAGAATCCGATTGCAAATGCTCCAAAAGATCTTGACCTTTGAGACAGCTTGGTTTGATGAGGAGCACAACACAAGTGGGGCATTGTGTTCAAGATTGAGCAATGAGGCTTCCATGGTGAAGTCCCTTGTGGCAGACAGGGTCTCTTTATTAGTCCAAACCACTTCAGCCGTCACAATTGCTATGATGTTGGGACTAATAGTTGCTTGGAAGCTAGCACTTGTTATGATTGCGGTCCAACCACTCGCGATTCTTTGCTTCTACACCAAGAAAGTGTTGCTCTCTAGCCTTTCAGCCAATTTTGTCAAGGCGCAAAACCATAGCACCCAAATTGCAGTTGAAGCAGTTTATAACCATAGAATTGTAACTTCATTTGCAAGTGTAGAGAAAGTGCTCCAAATATTCGACAAAGCTCAGGAGGCACCAAGAAAAGAGGCAAGGAAGAAGTCATGGCTGGCTGGCATTGGAATGGGGTCAGCTCAGTGCCTAACATTTATGTCATGGGCATTGGACTTTTGGTATGGTGGTAAACTAGTTAAAAATGGACAAATATCAGCTGGGGATGTGTTCAAAACATTTTTCATATTGGTTAGTACTGGTAAGGTTATAGCAGAAGCTGGGAGCATGACTTCTGATTTAGCCAAGGGTGCTACTGCAGTTGCATCTGTGTTTGAGATTCTTGACAGGCACTCACTGATTCCAGGGTCACAGAATATTGGGGATGATGATGGTACTAGTGGAATCAAGTTAGAAAAAGTAACAGGGAGGATAGATATGAAGAAAGTTGACTTTGCATACCCAAGCAGGCCGGAGACCCTAGTGTTGCGCCAATTTAGCTTGGAGGTCAAGGCAGGCACAAGCATTGGACTTGTTGGGAAAAGTGGGTGTGGTAAATCAACTGCGATTGGACTGATACAAAGGTTTTATGATGTTGAGAGGGGGTCAGTGAAGGTAGATGGAGTTGATATAAGGGAGCTAGATGTTCAATGGTATAGGAAGCACACTGCCCTTGTTAGCCAAGAGCCGGTGATATATTCAGGCACCATCCGCGACAACGTCATGTTCGGAAAGCTTGATGCTTCGGAGAATGAAGTCGTAGAGGCTGCCAGAGCTGCCAGTGCTCACGAATTCATCTCAGCCTTGAAAGACGGGTATGAGACAGAATGTGGTGAAAGAGGAGTGCAGCTCTCAGGAGGGCAGAAGCAAAGAATAGCAATAGCAAGAGCAATACTTAGGAACCCTATAATACTATTGTTAGATGAGGCAACAAGCGCTCTTGATGTGCAATCGGAGCACCTTGTGCAGGAAGCATTGGACCGAATCATGGTTGGAAGGACCACAATTGTGATAGCACATCGACTTAACACCATAAAAAACCTTGAGATGATTGCAGTTGTCGAAGATGGGAAGGTTATAGAGAAAGGCACTTATGCTCAGCTCAAGCACAAGCGTGGTGCGTTCTTCAACCTTGCTAGCTGTCAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1219

Amino Acids

134.2

Weight (kDa)

8.76

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 87 - 332 4e-46 ABC transporter transmembrane region
ABC_tran PF00005 416 - 526 4.1e-16 ABC transporter
ABC_membrane PF00664 655 - 922 1.3e-46 ABC transporter transmembrane region
ABC_tran PF00005 999 - 1148 3.1e-29 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2142, 2523
AarI CACCTGC 1 cut(s) 433
AasI GACNNNNNNGTC 1 cut(s) 1437
Acc36I ACCTGC 2 cut(s) 433, 1803
AccB1I GGYRCC 4 cut(s) 589, 1298, 2593, 3212
AccI GTMKAC 3 cut(s) 242, 372, 1755
AccII CGCG 2 cut(s) 2420, 3222
AccIII TCCGGA 2 cut(s) 106, 1231
AciI CCGC 7 cut(s) 147, 1305, 1634, 1824, 1915, 2405, 3220
AclWI GGATC 3 cut(s) 893, 1016, 1413
AcsI RAATTY 5 cut(s) 165, 1196, 1768, 2070, 3299
AcuI CTGAAG 3 cut(s) 470, 1590, 2322
AdeI CACNNNGTG 2 cut(s) 81, 3472
AfaI GTAC 9 cut(s) 57, 293, 467, 851, 1035, 1338, 1462, 2767, 2905
AfeI AGCGCT 1 cut(s) 3445
AfiI CCNNNNNNNGG 7 cut(s) 438, 1633, 1941, 2014, 3196, 3475, 3496
AhlI ACTAGT 2 cut(s) 2704, 2906
AjnI CCWGG 1 cut(s) 2872
AleI CACNNNNGTG 2 cut(s) 3515, 3621
Alw21I GWGCWC 6 cut(s) 800, 2068, 2241, 2568, 3295, 3468
Alw44I GTGCAC 1 cut(s) 2064
AlwI GGATC 3 cut(s) 893, 1016, 1413
AlwNI CAGNNNCTG 4 cut(s) 448, 1526, 1883, 2789
Aor13HI TCCGGA 2 cut(s) 106, 1231
Aor51HI AGCGCT 1 cut(s) 3445
AoxI GGCC 2 cut(s) 1951, 2978
ApaLI GTGCAC 1 cut(s) 2064
ApoI RAATTY 5 cut(s) 165, 1196, 1768, 2070, 3299
Asp700I GAANNNNTTC 2 cut(s) 477, 2080
AspLEI GCGC 3 cut(s) 2485, 3000, 3446
AspS9I GGNCC 4 cut(s) 50, 2407, 3487, 3507
AsuC2I CCSGG 2 cut(s) 628, 705
AsuII TTCGAA 3 cut(s) 1372, 1615, 2074
AsuNHI GCTAGC 4 cut(s) 62, 1714, 2386, 3644
AvaII GGWCC 4 cut(s) 50, 2407, 3487, 3507
BaeGI GKGCMC 1 cut(s) 2068
BaeI ACNNNNGTAYC 2 cut(s) 3077, 3110
BanI GGYRCC 4 cut(s) 589, 1298, 2593, 3212
BanII GRGCYC 1 cut(s) 800
BarI GAAGNNNNNNTAC 2 cut(s) 443, 475
BbsI GAAGAC 3 cut(s) 1158, 1286, 1779
Bbv12I GWGCWC 6 cut(s) 800, 2068, 2241, 2568, 3295, 3468
BceAI ACGGC 3 cut(s) 255, 840, 2327
BcgI CGANNNNNNTGC 4 cut(s) 507, 541, 1012, 1046
BciT130I CCWGG 1 cut(s) 2874
BclI TGATCA 2 cut(s) 534, 696
BcnI CCSGG 2 cut(s) 628, 705
BcuI ACTAGT 2 cut(s) 2704, 2906
BfmI CTRYAG 4 cut(s) 915, 1608, 1884, 2826
BfoI RGCGCY 1 cut(s) 3447
BfuAI ACCTGC 2 cut(s) 433, 1803
BglII AGATCT 1 cut(s) 2202
BlpI GCTNAGC 1 cut(s) 3606
BmcAI AGTACT 3 cut(s) 57, 467, 2767
Bme1390I CCNGG 3 cut(s) 628, 705, 2874
Bme18I GGWCC 4 cut(s) 50, 2407, 3487, 3507
BmgT120I GGNCC 4 cut(s) 50, 2407, 3487, 3507
BmiI GGNNCC 6 cut(s) 214, 591, 1300, 2595, 3214, 3410
BmrFI CCNGG 3 cut(s) 628, 705, 2874
BmsI GCATC 8 cut(s) 1032, 1112, 1342, 1489, 1662, 1713, 2843, 3238
BmtI GCTAGC 4 cut(s) 66, 1718, 2390, 3648
BpiI GAAGAC 3 cut(s) 1158, 1286, 1779
BplI GAGNNNNNCTC 4 cut(s) 836, 868, 3342, 3374
Bpu10I CCTNAGC 1 cut(s) 2586
Bpu1102I GCTNAGC 1 cut(s) 3606
Bpu14I TTCGAA 3 cut(s) 1372, 1615, 2074
BpuEI CTTGAG 2 cut(s) 3572, 3596
BpuMI CCSGG 2 cut(s) 628, 705
BsaI GGTCTC 4 cut(s) 1574, 1865, 2320, 2978
BsaJI CCNNGG 7 cut(s) 124, 1050, 1584, 2013, 2286, 2814, 2873
BsaWI WCCGGW 2 cut(s) 106, 1231
BsaXI ACNNNNNCTCC 2 cut(s) 675, 705
Bsc4I CCNNNNNNNGG 7 cut(s) 438, 1633, 1941, 2014, 3196, 3475, 3496
Bse118I RCCGGY 1 cut(s) 3196
Bse1I ACTGG 4 cut(s) 53, 432, 2773, 3288
Bse3DI GCAATG 3 cut(s) 1095, 1629, 2281
BseAI TCCGGA 2 cut(s) 106, 1231
BseBI CCWGG 1 cut(s) 2874
BseDI CCNNGG 7 cut(s) 124, 1050, 1584, 2013, 2286, 2814, 2873
BseGI GGATG 6 cut(s) 342, 1516, 1894, 2740, 2899, 3216
BseLI CCNNNNNNNGG 7 cut(s) 438, 1633, 1941, 2014, 3196, 3475, 3496
BseMI GCAATG 3 cut(s) 1095, 1629, 2281
BseNI ACTGG 4 cut(s) 53, 432, 2773, 3288
BseRI GAGGAG 2 cut(s) 2249, 3363
BseSI GKGCMC 1 cut(s) 2068
BseYI CCCAGC 3 cut(s) 880, 2729, 2789
BsgI GTGCAG 4 cut(s) 376, 2082, 3374, 3494
Bsh1236I CGCG 2 cut(s) 2420, 3222
BshFI GGCC 2 cut(s) 1953, 2980
BshNI GGYRCC 4 cut(s) 589, 1298, 2593, 3212
BsiHKAI GWGCWC 6 cut(s) 800, 2068, 2241, 2568, 3295, 3468
BsiSI CCGG 6 cut(s) 107, 627, 705, 1232, 2981, 3197
BslFI GGGAC 3 cut(s) 1443, 2281, 2379
BslI CCNNNNNNNGG 7 cut(s) 438, 1633, 1941, 2014, 3196, 3475, 3496
BsmBI CGTCTC 1 cut(s) 628
BsmFI GGGAC 3 cut(s) 1443, 2281, 2379
BsnI GGCC 2 cut(s) 1953, 2980
Bso31I GGTCTC 4 cut(s) 1574, 1865, 2320, 2978
Bsp119I TTCGAA 3 cut(s) 1372, 1615, 2074
Bsp1286I GDGCHC 6 cut(s) 800, 2068, 2241, 2568, 3295, 3468
Bsp13I TCCGGA 2 cut(s) 106, 1231
Bsp143I GATC 8 cut(s) 534, 696, 711, 885, 1008, 1418, 1829, 2202
Bsp1720I GCTNAGC 1 cut(s) 3606
Bsp19I CCATGG 2 cut(s) 124, 2286
Bsp68I TCGCGA 1 cut(s) 2420
BspACI CCGC 7 cut(s) 147, 1305, 1634, 1824, 1915, 2405, 3220
BspANI GGCC 2 cut(s) 1953, 2980
BspEI TCCGGA 2 cut(s) 106, 1231
BspFNI CGCG 2 cut(s) 2420, 3222
BspLI GGNNCC 6 cut(s) 214, 591, 1300, 2595, 3214, 3410
BspMAI CTGCAG 1 cut(s) 2830
BspMI ACCTGC 2 cut(s) 433, 1803
BspOI GCTAGC 4 cut(s) 66, 1718, 2390, 3648
BspPI GGATC 3 cut(s) 893, 1016, 1413
BspT104I TTCGAA 3 cut(s) 1372, 1615, 2074
BspT107I GGYRCC 4 cut(s) 589, 1298, 2593, 3212
BspTNI GGTCTC 4 cut(s) 1574, 1865, 2320, 2978
BsrDI GCAATG 3 cut(s) 1095, 1629, 2281
BsrFI RCCGGY 1 cut(s) 3196
BsrI ACTGG 4 cut(s) 53, 432, 2773, 3288
BssAI RCCGGY 1 cut(s) 3196
BssECI CCNNGG 7 cut(s) 124, 1050, 1584, 2013, 2286, 2814, 2873
BssMI GATC 8 cut(s) 534, 696, 711, 885, 1008, 1418, 1829, 2202
BssNAI GTATAC 1 cut(s) 373
BssT1I CCWWGG 5 cut(s) 124, 1050, 1584, 2286, 2814
Bst1107I GTATAC 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 2874
Bst6I CTCTTC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 3472
BstBI TTCGAA 3 cut(s) 1372, 1615, 2074
BstDSI CCRYGG 3 cut(s) 124, 2013, 2286
BstENI CCTNNNNNAGG 1 cut(s) 3473
BstF5I GGATG 6 cut(s) 342, 1516, 1894, 2740, 2899, 3216
BstFNI CGCG 2 cut(s) 2420, 3222
BstH2I RGCGCY 1 cut(s) 3447
BstHHI GCGC 3 cut(s) 2485, 3000, 3446
BstKTI GATC 8 cut(s) 537, 699, 714, 888, 1011, 1421, 1832, 2205
BstMBI GATC 8 cut(s) 534, 696, 711, 885, 1008, 1418, 1829, 2202
BstNI CCWGG 1 cut(s) 2874
BstNSI RCATGY 2 cut(s) 241, 1451
BstSCI CCNGG 3 cut(s) 626, 703, 2872
BstSFI CTRYAG 4 cut(s) 915, 1608, 1884, 2826
BstSLI GKGCMC 1 cut(s) 2068
BstUI CGCG 2 cut(s) 2420, 3222
BstV2I GAAGAC 3 cut(s) 1158, 1286, 1779
BstX2I RGATCY 3 cut(s) 1008, 1418, 2202
BstYI RGATCY 3 cut(s) 1008, 1418, 2202
BstZ17I GTATAC 1 cut(s) 373
BsuRI GGCC 2 cut(s) 1953, 2980
BtgI CCRYGG 3 cut(s) 124, 2013, 2286
BtsCI GGATG 6 cut(s) 342, 1516, 1894, 2740, 2899, 3216
BtsI GCAGTG 2 cut(s) 1810, 3174
BtuMI TCGCGA 1 cut(s) 2420
BveI ACCTGC 2 cut(s) 433, 1803
CaiI CAGNNNCTG 4 cut(s) 448, 1526, 1883, 2789
CfoI GCGC 3 cut(s) 2485, 3000, 3446
Cfr10I RCCGGY 1 cut(s) 3196
Cfr13I GGNCC 4 cut(s) 50, 2407, 3487, 3507
Csp6I GTAC 9 cut(s) 56, 292, 466, 850, 1034, 1337, 1461, 2766, 2904
CspCI CAANNNNNGTGG 6 cut(s) 1309, 1344, 1391, 1426, 2230, 2265
CviQI GTAC 9 cut(s) 56, 292, 466, 850, 1034, 1337, 1461, 2766, 2904
DpnI GATC 8 cut(s) 536, 698, 713, 887, 1010, 1420, 1831, 2204
DpnII GATC 8 cut(s) 534, 696, 711, 885, 1008, 1418, 1829, 2202
DraI TTTAAA 1 cut(s) 1929
DraIII CACNNNGTG 2 cut(s) 81, 3472
DrdI GACNNNNNNGTC 1 cut(s) 1437
DseDI GACNNNNNNGTC 1 cut(s) 1437
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 798
Eco130I CCWWGG 5 cut(s) 124, 1050, 1584, 2286, 2814
Eco147I AGGCCT 1 cut(s) 1953
Eco24I GRGCYC 1 cut(s) 800
Eco31I GGTCTC 4 cut(s) 1574, 1865, 2320, 2978
Eco32I GATATC 1 cut(s) 2028
Eco47I GGWCC 4 cut(s) 50, 2407, 3487, 3507
Eco47III AGCGCT 1 cut(s) 3445
Eco53kI GAGCTC 1 cut(s) 798
Eco57I CTGAAG 3 cut(s) 470, 1590, 2322
EcoICRI GAGCTC 1 cut(s) 798
EcoNI CCTNNNNNAGG 1 cut(s) 3473
EcoRI GAATTC 3 cut(s) 1196, 2070, 3299
EcoRII CCWGG 1 cut(s) 2872
EcoRV GATATC 1 cut(s) 2028
EcoT14I CCWWGG 5 cut(s) 124, 1050, 1584, 2286, 2814
EcoT38I GRGCYC 1 cut(s) 800
ErhI CCWWGG 5 cut(s) 124, 1050, 1584, 2286, 2814
Esp3I CGTCTC 1 cut(s) 628
FalI AAGNNNNNCTT 2 cut(s) 465, 497
FaqI GGGAC 3 cut(s) 1443, 2281, 2379
FbaI TGATCA 2 cut(s) 534, 696
FblI GTMKAC 3 cut(s) 242, 372, 1755
FokI GGATG 6 cut(s) 349, 1523, 1881, 2747, 2906, 3203
FriOI GRGCYC 1 cut(s) 800
GlaI GCGC 3 cut(s) 2484, 2999, 3445
GsaI CCCAGC 3 cut(s) 884, 2733, 2793
HaeII RGCGCY 1 cut(s) 3447
HaeIII GGCC 2 cut(s) 1953, 2980
HapII CCGG 6 cut(s) 107, 627, 705, 1232, 2981, 3197
HhaI GCGC 3 cut(s) 2485, 3000, 3446
Hin6I GCGC 3 cut(s) 2483, 2998, 3444
HinP1I GCGC 3 cut(s) 2483, 2998, 3444
HincII GTYRAC 2 cut(s) 8, 2959
HindII GTYRAC 2 cut(s) 8, 2959
HindIII AAGCTT 3 cut(s) 1089, 1601, 3242
HpaII CCGG 6 cut(s) 107, 627, 705, 1232, 2981, 3197
Hpy166II GTNNAC 9 cut(s) 8, 243, 373, 822, 1043, 1756, 2066, 2702, 2959
Hpy8I GTNNAC 9 cut(s) 8, 243, 373, 822, 1043, 1756, 2066, 2702, 2959
HpyCH4IV ACGT 1 cut(s) 3228
HpySE526I ACGT 1 cut(s) 3228
HspAI GCGC 3 cut(s) 2483, 2998, 3444
Kpn2I TCCGGA 2 cut(s) 106, 1231
Ksp22I TGATCA 2 cut(s) 534, 696
Kzo9I GATC 8 cut(s) 534, 696, 711, 885, 1008, 1418, 1829, 2202
LmnI GCTCC 9 cut(s) 221, 423, 803, 2199, 2236, 2571, 2793, 3145, 3463
LweI GCATC 8 cut(s) 1032, 1112, 1342, 1489, 1662, 1713, 2843, 3238
MaeII ACGT 1 cut(s) 3228
MaeIII GTNAC 6 cut(s) 458, 1516, 2344, 2536, 2877, 2929
MalI GATC 8 cut(s) 536, 698, 713, 887, 1010, 1420, 1831, 2204
MboI GATC 8 cut(s) 534, 696, 711, 885, 1008, 1418, 1829, 2202
MfeI CAATTG 6 cut(s) 331, 1284, 1326, 1403, 2349, 3513
MflI RGATCY 3 cut(s) 1008, 1418, 2202
MhlI GDGCHC 6 cut(s) 800, 2068, 2241, 2568, 3295, 3468
MmeI TCCRAC 5 cut(s) 401, 704, 2017, 2434, 3481
MroI TCCGGA 2 cut(s) 106, 1231
MroXI GAANNNNTTC 2 cut(s) 477, 2080
MseI TTAA 7 cut(s) 68, 1817, 1928, 2108, 2709, 3534, 3658
MslI CAYNNNNRTG 4 cut(s) 1634, 2639, 3515, 3621
MspA1I CMGCKG 3 cut(s) 1305, 1523, 2729
MspI CCGG 6 cut(s) 107, 627, 705, 1232, 2981, 3197
MspR9I CCNGG 3 cut(s) 628, 705, 2874
MunI CAATTG 6 cut(s) 331, 1284, 1326, 1403, 2349, 3513
MvaI CCWGG 1 cut(s) 2874
MvnI CGCG 2 cut(s) 2420, 3222
NciI CCSGG 2 cut(s) 628, 705
NcoI CCATGG 2 cut(s) 124, 2286
NdeII GATC 8 cut(s) 534, 696, 711, 885, 1008, 1418, 1829, 2202
NheI GCTAGC 4 cut(s) 62, 1714, 2386, 3644
NlaIV GGNNCC 6 cut(s) 214, 591, 1300, 2595, 3214, 3410
NmuCI GTSAC 3 cut(s) 1516, 2344, 2877
NruI TCGCGA 1 cut(s) 2420
NspI RCATGY 2 cut(s) 241, 1451
NspV TTCGAA 3 cut(s) 1372, 1615, 2074
OliI CACNNNNGTG 2 cut(s) 3515, 3621
PaqCI CACCTGC 1 cut(s) 433
PceI AGGCCT 1 cut(s) 1953
PdmI GAANNNNTTC 2 cut(s) 477, 2080
PflFI GACNNNGTC 2 cut(s) 2312, 3227
PsiI TTATAA 2 cut(s) 2142, 2523
Psp124BI GAGCTC 1 cut(s) 800
Psp6I CCWGG 1 cut(s) 2872
PspFI CCCAGC 3 cut(s) 880, 2729, 2789
PspGI CCWGG 1 cut(s) 2872
PspN4I GGNNCC 6 cut(s) 214, 591, 1300, 2595, 3214, 3410
PspPI GGNCC 4 cut(s) 50, 2407, 3487, 3507
PstI CTGCAG 1 cut(s) 2830
PstNI CAGNNNCTG 4 cut(s) 448, 1526, 1883, 2789
PsuI RGATCY 3 cut(s) 1008, 1418, 2202
PsyI GACNNNGTC 2 cut(s) 2312, 3227
PvuII CAGCTG 2 cut(s) 1523, 2729
RruI TCGCGA 1 cut(s) 2420
RsaI GTAC 9 cut(s) 57, 293, 467, 851, 1035, 1338, 1462, 2767, 2905
RsaNI GTAC 9 cut(s) 56, 292, 466, 850, 1034, 1337, 1461, 2766, 2904
RseI CAYNNNNRTG 4 cut(s) 1634, 2639, 3515, 3621
SacI GAGCTC 1 cut(s) 800
SaqAI TTAA 7 cut(s) 68, 1817, 1928, 2108, 2709, 3534, 3658
Sau3AI GATC 8 cut(s) 534, 696, 711, 885, 1008, 1418, 1829, 2202
Sau96I GGNCC 4 cut(s) 50, 2407, 3487, 3507
ScaI AGTACT 3 cut(s) 57, 467, 2767
ScrFI CCNGG 3 cut(s) 628, 705, 2874
SduI GDGCHC 6 cut(s) 800, 2068, 2241, 2568, 3295, 3468
SfaNI GCATC 8 cut(s) 1032, 1112, 1342, 1489, 1662, 1713, 2843, 3238
SfcI CTRYAG 4 cut(s) 915, 1608, 1884, 2826
SfuI TTCGAA 3 cut(s) 1372, 1615, 2074
SinI GGWCC 4 cut(s) 50, 2407, 3487, 3507
SmiMI CAYNNNNRTG 4 cut(s) 1634, 2639, 3515, 3621
SmlI CTYRAG 2 cut(s) 3551, 3611
SmoI CTYRAG 2 cut(s) 3551, 3611
SpeI ACTAGT 2 cut(s) 2704, 2906
SseBI AGGCCT 1 cut(s) 1953
SsiI CCGC 7 cut(s) 147, 1305, 1634, 1824, 1915, 2405, 3220
SspI AATATT 2 cut(s) 2574, 2887
SstI GAGCTC 1 cut(s) 800
StuI AGGCCT 1 cut(s) 1953
StyD4I CCNGG 3 cut(s) 626, 703, 2872
StyI CCWWGG 5 cut(s) 124, 1050, 1584, 2286, 2814
TaiI ACGT 1 cut(s) 3231
TaqI TCGA 9 cut(s) 504, 1372, 1386, 1615, 1659, 2074, 2577, 3529, 3570
TaqII GACCGA 2 cut(s) 1143, 3504
TatI WGTACW 3 cut(s) 55, 465, 2765
Tru1I TTAA 7 cut(s) 68, 1817, 1928, 2108, 2709, 3534, 3658
Tru9I TTAA 7 cut(s) 68, 1817, 1928, 2108, 2709, 3534, 3658
TseFI GTSAC 3 cut(s) 1516, 2344, 2877
Tsp45I GTSAC 3 cut(s) 1516, 2344, 2877
TspGWI ACGGA 1 cut(s) 63
Tth111I GACNNNGTC 2 cut(s) 2312, 3227
VneI GTGCAC 1 cut(s) 2064
VpaK11BI GGWCC 4 cut(s) 50, 2407, 3487, 3507
XagI CCTNNNNNAGG 1 cut(s) 3473
XapI RAATTY 5 cut(s) 165, 1196, 1768, 2070, 3299
XbaI TCTAGA 1 cut(s) 43
XceI RCATGY 2 cut(s) 241, 1451
XmiI GTMKAC 3 cut(s) 242, 372, 1755
XmnI GAANNNNTTC 2 cut(s) 477, 2080
ZrmI AGTACT 3 cut(s) 57, 467, 2767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.