Rh2AG616200

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000317
Physical Location & Seq
Forward (+)
84079225 .. 84085961
6737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG616200.1

Sequence Viewer

Length: 768 bp
ATGAGGAACGTACCTATCTTCTTGCAGGTGAGATCTTTAGTGGGTGATCGGCTTTCTCTACTTGTACAAACCTTCTCAGCTGTGACAGTAGCAGGCACAATGGGTTTGGTCATTGCATGGAGGCTGGCCTCAGTTATGATAGCACTGCAACCCATCACTATTCTGTGCTACTACACCAGGAGTATCCTTCTCCAAAGCATGTCAAGCAAAGCCACCAAAGCTCAAGATGAAAGTAGCAAGCTAGCTGCAGAGGCAGTCTCCAACCTCAGAACCATCACTGCTTTCTCGTCTCAAGACCGCCTGTTGAAAATGCTCGAAAAGGCCCAAGAAGGCCCGCGTAAGGAGAGCATTCGACAATCATGGTTTGCGGGTATTGCTCTTGGTTGTTCTCAAGGTCTTAACACTATCACCTGGGCTTTTGACTTTTGGTACGGAGGCAAGCTCGTCGCCAAGGGCTACATAACTGCCAAAGCACTGTTTCGGACGTACATGATATTGCTGAGCACGGGTCGGGTCATTGCGGAAGCCGGAAGTATGACTTCGGACCTTGTGAAAGGCTCGGACGCTGTTGCGTCCGTATTTGCCGTGTTGGACCGGTACACAAATATAGAACCGGAAGACCCGGAAGGTTGCAAACCCAAAAGTATAACAGGCTACGGAGCAATCGCCCCACTAAGACACAGGATGATGCTCTTGTACTTCTCAAAGAAATTAAGCAAGAGTTTAAGTACCCAAGAAGAAATTACGAAATGTTCCTTGAGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

255

Amino Acids

27.96

Weight (kDa)

9.59

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 9 - 168 8.7e-25 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 16
Acc36I ACCTGC 1 cut(s) 16
AccII CGCG 1 cut(s) 337
AciI CCGC 4 cut(s) 298, 335, 368, 521
AfaI GTAC 7 cut(s) 12, 66, 431, 488, 599, 698, 730
AfiI CCNNNNNNNGG 1 cut(s) 340
AgeI ACCGGT 1 cut(s) 594
AgsI TTSAA 1 cut(s) 307
AjnI CCWGG 2 cut(s) 176, 410
AluBI AGCT 6 cut(s) 80, 221, 241, 245, 442, 762
AluI AGCT 6 cut(s) 80, 221, 241, 245, 442, 762
Alw21I GWGCWC 2 cut(s) 506, 764
Alw26I GTCTC 2 cut(s) 262, 294
AoxI GGCC 3 cut(s) 126, 321, 331
ApeKI GCWGC 1 cut(s) 245
AsiGI ACCGGT 1 cut(s) 594
AspS9I GGNCC 4 cut(s) 322, 332, 544, 592
AsuC2I CCSGG 1 cut(s) 623
AsuHPI GGTGA 3 cut(s) 40, 56, 400
AsuNHI GCTAGC 1 cut(s) 241
AvaII GGWCC 2 cut(s) 544, 592
BanII GRGCYC 1 cut(s) 764
BbsI GAAGAC 1 cut(s) 624
Bbv12I GWGCWC 2 cut(s) 506, 764
BbvI GCAGC 1 cut(s) 232
BccI CCATC 2 cut(s) 161, 281
BceAI ACGGC 1 cut(s) 569
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BciT130I CCWGG 2 cut(s) 178, 412
BciVI GTATCC 1 cut(s) 194
BcnI CCSGG 1 cut(s) 623
BcoDI GTCTC 2 cut(s) 262, 294
BfaI CTAG 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 16
BfuI GTATCC 1 cut(s) 194
BglII AGATCT 1 cut(s) 32
BisI GCNGC 1 cut(s) 246
BlpI GCTNAGC 1 cut(s) 500
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 3 cut(s) 178, 412, 623
Bme18I GGWCC 2 cut(s) 544, 592
BmgT120I GGNCC 4 cut(s) 322, 332, 544, 592
BmrFI CCNGG 3 cut(s) 178, 412, 623
BmsI GCATC 1 cut(s) 678
BmtI GCTAGC 1 cut(s) 245
BpiI GAAGAC 1 cut(s) 624
BplI GAGNNNNNCTC 4 cut(s) 242, 274, 426, 458
Bpu1102I GCTNAGC 1 cut(s) 500
BpuEI CTTGAG 3 cut(s) 207, 276, 375
BpuMI CCSGG 1 cut(s) 623
BsaJI CCNNGG 2 cut(s) 411, 450
BsaWI WCCGGW 2 cut(s) 594, 613
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse118I RCCGGY 1 cut(s) 594
Bse3DI GCAATG 2 cut(s) 111, 516
BseBI CCWGG 2 cut(s) 178, 412
BseDI CCNNGG 2 cut(s) 411, 450
BseGI GGATG 1 cut(s) 690
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMI GCAATG 2 cut(s) 111, 516
BseMII CTCAG 4 cut(s) 90, 144, 280, 491
BseXI GCAGC 1 cut(s) 232
Bsh1236I CGCG 1 cut(s) 337
BshFI GGCC 3 cut(s) 128, 323, 333
BshTI ACCGGT 1 cut(s) 594
BsiHKAI GWGCWC 2 cut(s) 506, 764
BsiSI CCGG 4 cut(s) 528, 595, 614, 623
BslI CCNNNNNNNGG 1 cut(s) 340
BsmAI GTCTC 2 cut(s) 262, 294
BsmBI CGTCTC 1 cut(s) 294
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 3 cut(s) 128, 323, 333
Bsp1286I GDGCHC 2 cut(s) 506, 764
Bsp1407I TGTACA 1 cut(s) 64
Bsp143I GATC 2 cut(s) 32, 46
Bsp1720I GCTNAGC 1 cut(s) 500
BspACI CCGC 4 cut(s) 298, 335, 368, 521
BspANI GGCC 3 cut(s) 128, 323, 333
BspCNI CTCAG 4 cut(s) 89, 143, 279, 492
BspFNI CGCG 1 cut(s) 337
BspHI TCATGA 1 cut(s) 764
BspMAI CTGCAG 1 cut(s) 250
BspMI ACCTGC 1 cut(s) 16
BspOI GCTAGC 1 cut(s) 245
BsrDI GCAATG 2 cut(s) 111, 516
BsrFI RCCGGY 1 cut(s) 594
BsrGI TGTACA 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 594
BssECI CCNNGG 2 cut(s) 411, 450
BssMI GATC 2 cut(s) 32, 46
BssT1I CCWWGG 1 cut(s) 450
Bst2UI CCWGG 2 cut(s) 178, 412
Bst4CI ACNGT 2 cut(s) 88, 477
BstAUI TGTACA 1 cut(s) 64
BstC8I GCNNGC 6 cut(s) 94, 126, 239, 243, 335, 440
BstDEI CTNAG 5 cut(s) 76, 130, 266, 500, 674
BstF5I GGATG 1 cut(s) 690
BstFNI CGCG 1 cut(s) 337
BstKTI GATC 2 cut(s) 35, 49
BstMAI GTCTC 2 cut(s) 262, 294
BstMBI GATC 2 cut(s) 32, 46
BstMWI GCNNNNNNNGC 4 cut(s) 204, 218, 251, 374
BstNI CCWGG 2 cut(s) 178, 412
BstNSI RCATGY 1 cut(s) 202
BstSCI CCNGG 3 cut(s) 176, 410, 621
BstSFI CTRYAG 1 cut(s) 246
BstUI CGCG 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 232
BstV2I GAAGAC 1 cut(s) 624
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BsuI GTATCC 1 cut(s) 194
BsuRI GGCC 3 cut(s) 128, 323, 333
BtsCI GGATG 1 cut(s) 690
BtsI GCAGTG 2 cut(s) 143, 276
BtsIMutI CAGTG 3 cut(s) 143, 276, 473
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 6 cut(s) 94, 126, 239, 243, 335, 440
CciI TCATGA 1 cut(s) 764
Cfr10I RCCGGY 1 cut(s) 594
Cfr13I GGNCC 4 cut(s) 322, 332, 544, 592
CseI GACGC 2 cut(s) 561, 572
Csp6I GTAC 7 cut(s) 11, 65, 430, 487, 598, 697, 729
CspAI ACCGGT 1 cut(s) 594
CviAII CATG 5 cut(s) 117, 199, 360, 490, 765
CviQI GTAC 7 cut(s) 11, 65, 430, 487, 598, 697, 729
DdeI CTNAG 5 cut(s) 76, 130, 266, 500, 674
DpnI GATC 2 cut(s) 34, 48
DpnII GATC 2 cut(s) 32, 46
Ecl136II GAGCTC 1 cut(s) 762
Eco130I CCWWGG 1 cut(s) 450
Eco24I GRGCYC 1 cut(s) 764
Eco47I GGWCC 2 cut(s) 544, 592
Eco53kI GAGCTC 1 cut(s) 762
EcoICRI GAGCTC 1 cut(s) 762
EcoRII CCWGG 2 cut(s) 176, 410
EcoT14I CCWWGG 1 cut(s) 450
EcoT38I GRGCYC 1 cut(s) 764
ErhI CCWWGG 1 cut(s) 450
Esp3I CGTCTC 1 cut(s) 294
FaeI CATG 5 cut(s) 120, 202, 363, 493, 768
FalI AAGNNNNNCTT 2 cut(s) 523, 555
FatI CATG 5 cut(s) 116, 198, 359, 489, 764
FauI CCCGC 2 cut(s) 342, 361
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 1 cut(s) 697
FriOI GRGCYC 1 cut(s) 764
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 1 cut(s) 242
GluI GCNGC 1 cut(s) 246
HaeIII GGCC 3 cut(s) 128, 323, 333
HapII CCGG 4 cut(s) 528, 595, 614, 623
HgaI GACGC 2 cut(s) 561, 572
Hin1II CATG 5 cut(s) 120, 202, 363, 493, 768
HpaII CCGG 4 cut(s) 528, 595, 614, 623
HphI GGTGA 3 cut(s) 40, 56, 400
Hpy166II GTNNAC 1 cut(s) 600
Hpy188I TCNGA 4 cut(s) 269, 483, 544, 562
Hpy188III TCNNGA 3 cut(s) 224, 293, 765
Hpy8I GTNNAC 1 cut(s) 600
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 4 cut(s) 82, 197, 323, 620
HpyCH4III ACNGT 2 cut(s) 88, 477
HpyCH4IV ACGT 2 cut(s) 9, 485
HpyCH4V TGCA 5 cut(s) 25, 116, 148, 248, 633
HpyF10VI GCNNNNNNNGC 4 cut(s) 204, 218, 251, 374
HpyF3I CTNAG 5 cut(s) 76, 130, 266, 500, 674
HpySE526I ACGT 2 cut(s) 9, 485
Hsp92II CATG 5 cut(s) 120, 202, 363, 493, 768
Kzo9I GATC 2 cut(s) 32, 46
LmnI GCTCC 1 cut(s) 659
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 1 cut(s) 678
MaeI CTAG 1 cut(s) 242
MaeII ACGT 2 cut(s) 9, 485
MaeIII GTNAC 1 cut(s) 82
MalI GATC 2 cut(s) 34, 48
MboI GATC 2 cut(s) 32, 46
MboII GAAGA 3 cut(s) 10, 629, 749
MflI RGATCY 1 cut(s) 32
MhlI GDGCHC 2 cut(s) 506, 764
MluCI AATT 2 cut(s) 710, 741
MmeI TCCRAC 2 cut(s) 285, 570
MnlI CCTC 5 cut(s) 114, 139, 244, 275, 428
MseI TTAA 3 cut(s) 399, 713, 725
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 4 cut(s) 528, 595, 614, 623
MspR9I CCNGG 3 cut(s) 178, 412, 623
Mva1269I GAATGC 1 cut(s) 348
MvaI CCWGG 2 cut(s) 178, 412
MvnI CGCG 1 cut(s) 337
MwoI GCNNNNNNNGC 4 cut(s) 204, 218, 251, 374
NciI CCSGG 1 cut(s) 623
NdeII GATC 2 cut(s) 32, 46
NheI GCTAGC 1 cut(s) 241
NlaIII CATG 5 cut(s) 120, 202, 363, 493, 768
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 1 cut(s) 202
PagI TCATGA 1 cut(s) 764
PaqCI CACCTGC 1 cut(s) 16
PctI GAATGC 1 cut(s) 348
PinAI ACCGGT 1 cut(s) 594
PkrI GCNGC 1 cut(s) 247
Psp124BI GAGCTC 1 cut(s) 764
Psp6I CCWGG 2 cut(s) 176, 410
PspGI CCWGG 2 cut(s) 176, 410
PspPI GGNCC 4 cut(s) 322, 332, 544, 592
PstI CTGCAG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 7 cut(s) 12, 66, 431, 488, 599, 698, 730
RsaNI GTAC 7 cut(s) 11, 65, 430, 487, 598, 697, 729
SacI GAGCTC 1 cut(s) 764
SaqAI TTAA 3 cut(s) 399, 713, 725
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 2 cut(s) 32, 46
Sau96I GGNCC 4 cut(s) 322, 332, 544, 592
ScrFI CCNGG 3 cut(s) 178, 412, 623
SduI GDGCHC 2 cut(s) 506, 764
SfaNI GCATC 1 cut(s) 678
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 2 cut(s) 544, 592
SmlI CTYRAG 4 cut(s) 222, 291, 390, 757
SmoI CTYRAG 4 cut(s) 222, 291, 390, 757
Sse9I AATT 2 cut(s) 710, 741
SsiI CCGC 4 cut(s) 298, 335, 368, 521
SspMI CTAG 1 cut(s) 242
SstI GAGCTC 1 cut(s) 764
StyD4I CCNGG 3 cut(s) 176, 410, 621
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 2 cut(s) 88, 477
TaiI ACGT 2 cut(s) 12, 488
TaqI TCGA 2 cut(s) 315, 352
TasI AATT 2 cut(s) 710, 741
TatI WGTACW 2 cut(s) 64, 696
Tru1I TTAA 3 cut(s) 399, 713, 725
Tru9I TTAA 3 cut(s) 399, 713, 725
TscAI CASTG 3 cut(s) 150, 283, 480
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 3 cut(s) 447, 565, 672
TspRI CASTG 3 cut(s) 150, 283, 480
VpaK11BI GGWCC 2 cut(s) 544, 592
XceI RCATGY 1 cut(s) 202
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.