AT3G28390

Contains the following InterPro domains ATPase, AAA type, core (InterPro IPR003593), ABC transporter-like (InterPro IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro IPR011527), ABC transporter integral membrane type 1 (InterPro IPR017940), ABC transporter, transmembrane domain (InterPro IPR001140), ABC transporter, conserved site (InterPro IPR017871)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000317
Physical Location & Seq
Reverse (-)
10629425 .. 10633967
4543 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G28390.1

Sequence Viewer

Length: 3678 bp
ATGATGAAGAGTTTTGGAAGCATAAGATCAATATTCATGCACGCGGACGGTGTAGATTGGATGTTGATGGCATTAGGTCTCATCGGAGCCGTTGGTGATGGCTTCATCACTCCTATTATATTTTTCATCTGCAGCAAACTACTGAACAACGTAGGTGGCTCCTCTTTCGATGATGAAACTTTCATGCAAACCGTTGCCAAGAATGCTGTAGCTTTGGTTTATGTGGCTTGTGCATCTTGGGTGATATGTTTCATTGAAGGATATTGCTGGACAAGAACAGGGGAGAGACAAGCGGCAAAAATGAGAGAGAAGTACTTAAAAGCAGTGTTAAGACAAGATGTGGGTTACTTTGATCTTCATGTTACAAGCACTTCTGATGTTATTACCAGTGTCTCTAGTGACAGCCTCGTTATTCAAGATTTCCTCAGTGAAAAGTTACCAAACTTTTTGATGAATACATCTGCGTTTGTCGCAAGCTACATAGTGGGTTTCTTATTGCTGTGGAGACTCACAATCGTAGGCTTTCCATTTATCATCCTCCTCTTGATCCCTGGACTAATGTACGGACGTGCCCTAATCCGCATCTCAATGAAAATACGCGAGGAGTATAATGAGGCTGGTTCTATAGCTGAACAGGTCATCTCATCAGTTCGAACTGTCTACGCATTTGGTAGTGAGAAGAAGATGATCGAAAAGTTCTCAACTGCGCTTCAAGGGTCGGTGAAGCTTGGGTTGAGACAAGGGCTAGCTAAGGGAATTGCCATTGGGAGCAATGGTATCACTTATGCTATTTGGGGGTTCTTGACTTGGTACGGAAGTCGGATGGTTATGAACCATGGCTCCAAAGGCGGCACCGTCTCCTCAGTCATTGTTTGCGTCACCTTCGGTGGCACATCACTTGGTCAAAGTTTGTCGAATCTCAAATATTTCTCAGAGGCGTTTGTCGTAGGAGAACGGATTATGAAAGTGATAAATAGAGTCCCTGGTATAGACTCAGACAACTTGGAAGGTCAGATACTTGAGAAAACTAGAGGAGAAGTTGAATTCAACCACGTGAAGTTCACCTACCCATCTAGACCTGAAACCCCAATCTTTGATGACTTATGTCTTAGAGTTCCATCCGGGAAAACTGTTGCTCTAGTAGGTGGAAGTGGATCGGGAAAATCAACTGTGATATCACTTTTACAAAGATTCTATGATCCGATCGCTGGAGAGATTCTCATTGATGGTTTGCCTATTAATAAATTGCAAGTGAAGTGGTTGAGATCACAAATGGGTCTTGTTAGCCAAGAGCCGGTGCTTTTCGCCACATCGATAAAAGAAAACATATTATTTGGTAAAGAGGATGCATCGATGGACGAGGTAGTGGAAGCTGCCAAGGCTTCAAATGCTCATAGTTTCATATCTCAATTCCCCAATAGTTACCAAACTCAGGTTGGGGAAAGAGGAGTACAATTATCAGGAGGCCAAAAGCAGAGGATTGCAATTGCACGAGCAATAATTAAATCACCAATAATTCTCCTTCTAGACGAGGCAACAAGCGCATTGGACTCTGAGTCCGAAAGGGTAGTTCAAGAAGCCTTAGACAATGCCTCTATTGGTCGTACAACTATTGTGATTGCTCACCGCCTATCTACTATTCGTAATGCTGATGTTATTTGTGTAGTCCATAATGGTCGCATTATAGAAACTGGATCACACGAAGAACTCTTGGAGAAGTTAGACGGCCAATACACTTCTCTAGTCCGTTTACAACAAGTGGATAATAAAGAATCAGATCATATAAGTGTGGAAGAGGGTCAAGCATCGAGTTTAAGCAAAGATTTGAAGTATAGTCCAAAAGAATTTATTCATAGCACGAGTTCAAACATCGTTAGAGATTTTCCTAATTTGAGTCCTAAGGATGGGAAGTCACTAGTGCCATCATTTAAAAGATTGATGTCAATGAATAGACCAGAGTGGAAACATGCATTATATGGTTGCTTAGGTGCAGCTCTATTTGGGGCCGTACAACCAATTTACTCGTATTCTTCGGGGTCAATGGTATCAGTGTATTTCCTAGCAAGCCATGACCAGATCAAGGAGAAAACAAGGATCTATGTGTTGTTATTTGTCGGTCTAGCTTTGTTCACTTTCTTGTCCAATATAAGTCAGCATTATGGTTTTGCGTACATGGGCGAATACCTAACAAAACGTATCCGAGAACGTATGCTCGGAAAGATACTAACGTTTGAAGTTAATTGGTTTGACAAAGATGAGAATTCGAGTGGTGCAATTTGCTCTAGACTAGCGAAAGATGCTAACATGGTGAGATCATTGGTTGGTGATCGGATGTCATTACTCGTACAAACTATATCGGCAGTGAGCATCACATGTGCAATTGGTTTGGTCATCTCTTGGCGATTCTCTATAGTGATGATGTCGGTGCAGCCAGTGATTGTTGTGTGCTTCTACACTCAACGCGTTCTGCTCAAAAGCATGTCGAGAAATGCCATCAAAGGCCAAGATGAAAGCAGTAAACTAGCTGCAGAAGCTGTCTCCAATATTCGAACCATTACAGCTTTCTCGTCACAAGAACGGATCATTAACTTACTTAAAATGGTCCAAGAAGGACCGCGGAAAGATAGCGCCCGCCAATCGTGGTTAGCAGGAATTATGTTGGGGACTTCACAAAGCCTTATAACGTGCGTTTCAGCTTTGAATTTCTGGTATGGTGGTAAACTTATTGCTGATGGGAAGATGATGTCAAAAGAATTTTTAGAAATATTTTTGATTTTTGCGAGTACGGGTCGGGTTATTGCCGAAGCTGGGACAATGACAAAAGATCTAGTCAAGGGATCAGATGCGGTTGCGTCAGTGTTTGCAGTATTAGATCGCAACACAACCATTGAGCCGGAGAACCCAGACGGTTACGTCCCTAAAAAAGTAAAGGGACAAATAAGTTTTTCCAACGTGGACTTTGCTTACCCAACACGGCCTGATGTGATTATATTCCAGAACTTTTCCATTGATATCGAAGATGGTAAGTCGACAGCGATCGTGGGTCCAAGCGGGTCAGGTAAATCTACTATAATTAGCTTGATCGAGCGATTCTACGACCCGTTAAAGGGTATTGTTAAAATCGATGGACGTGATATAAGGTCGTGTCATTTGAGATCACTTCGTCAACACATAGCTTTGGTTAGCCAAGAACCAACGTTATTTGCTGGGACAATACGTGAGAACATCATGTATGGAGGAGCATCAAACAAGATCGACGAATCGGAGATTATCGAGGCAGCAAAGGCAGCCAACGCTCATGATTTTATCACATCACTATCTAACGGCTATGACACATGTTGCGGGGACAGGGGAGTGCAATTGTCTGGTGGTCAAAAACAGAGAATCGCGATCGCTCGAGCGGTTCTAAAGAACCCATCGGTGTTGCTCCTGGATGAAGCTACAAGCGCTCTGGATAGCCAATCGGAAAGCGTGGTGCAAGACGCGCTTGAGCGTTTGATGGTTGGGAGGACAAGCGTTGTGATCGCTCATAGGCTTAGCACCATCCAAAAATGTGATACAATCGCTGTTTTAGAAAATGGAGCAGTTGTCGAATGTGGAAACCACTCGTCTTTATTGGCAAAGGGTCCAAAGGGAGCTTATTTCTCATTGGTCAGTCTCCAGAGAACTCTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1225

Amino Acids

134.3

Weight (kDa)

8.5

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 24 - 295 3.2e-46 ABC transporter transmembrane region
ABC_tran PF00005 366 - 514 2.2e-31 ABC transporter
ABC_membrane PF00664 659 - 924 3.6e-47 ABC transporter transmembrane region
AAA_15 PF13175 998 - 1064 6.8e-06 AAA ATPase domain
ABC_tran PF00005 999 - 1149 5.7e-33 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2681
AasI GACNNNNNNGTC 1 cut(s) 2912
AccB1I GGYRCC 1 cut(s) 851
AccBSI CCGCTC 1 cut(s) 3401
AccI GTMKAC 2 cut(s) 660, 3029
AccII CGCG 6 cut(s) 44, 600, 2463, 2617, 3389, 3485
AclI AACGTT 2 cut(s) 2228, 3197
AclWI GGATC 7 cut(s) 541, 1162, 1193, 1702, 2102, 2588, 2845
AcoI YGGCCR 1 cut(s) 1726
AcsI RAATTY 5 cut(s) 1043, 1844, 2260, 2701, 2753
AcvI CACGTG 1 cut(s) 1054
AfaI GTAC 9 cut(s) 314, 563, 812, 1452, 1606, 2010, 2171, 2346, 2785
AfeI AGCGCT 1 cut(s) 3448
AfiI CCNNNNNNNGG 8 cut(s) 1208, 1294, 1432, 1904, 2080, 2808, 3106, 3107
AflIII ACRYGT 3 cut(s) 2372, 2461, 3335
AhdI GACNNNNNGTC 1 cut(s) 1555
AhlI ACTAGT 1 cut(s) 1915
AjiI CACGTC 2 cut(s) 569, 3131
AjnI CCWGG 3 cut(s) 550, 982, 3429
AloI GAACNNNNNNTCC 2 cut(s) 824, 856
Alw26I GTCTC 8 cut(s) 83, 280, 397, 499, 730, 862, 2542, 3662
AlwI GGATC 7 cut(s) 541, 1162, 1193, 1702, 2102, 2588, 2845
AlwNI CAGNNNCTG 1 cut(s) 2534
Ama87I CYCGRG 1 cut(s) 3396
Aor51HI AGCGCT 1 cut(s) 3448
AoxI GGCC 5 cut(s) 1465, 1726, 2004, 2500, 2975
ApeKI GCWGC 7 cut(s) 132, 1373, 1991, 2428, 2525, 3278, 3287
ApoI RAATTY 5 cut(s) 1043, 1844, 2260, 2701, 2753
AseI ATTAAT 1 cut(s) 1239
AsiSI GCGATCGC 1 cut(s) 3393
Asp700I GAANNNNTTC 1 cut(s) 1848
AspLEI GCGC 5 cut(s) 709, 1544, 2630, 3449, 3487
AspS9I GGNCC 5 cut(s) 2004, 2602, 2612, 3044, 3626
AsuC2I CCSGG 1 cut(s) 1123
AsuHPI GGTGA 9 cut(s) 107, 253, 733, 871, 1054, 1500, 1616, 2320, 2336
AsuII TTCGAA 2 cut(s) 652, 2548
AsuNHI GCTAGC 1 cut(s) 745
AvaI CYCGRG 1 cut(s) 3396
AvaII GGWCC 4 cut(s) 2602, 2612, 3044, 3626
AxyI CCTNAGG 1 cut(s) 1899
BaeGI GKGCMC 1 cut(s) 574
BaeI ACNNNNGTAYC 4 cut(s) 802, 835, 2213, 2246
BanI GGYRCC 1 cut(s) 851
BarI GAAGNNNNNNTAC 4 cut(s) 999, 1031, 1049, 1081
BauI CACGAG 2 cut(s) 1491, 1858
BbrPI CACGTG 1 cut(s) 1054
BbvI GCAGC 7 cut(s) 144, 1360, 2003, 2440, 2512, 3290, 3299
BceAI ACGGC 5 cut(s) 74, 1741, 1991, 2990, 3340
BciT130I CCWGG 3 cut(s) 552, 984, 3431
BciVI GTATCC 1 cut(s) 2207
BcnI CCSGG 1 cut(s) 1123
BcoDI GTCTC 8 cut(s) 83, 280, 397, 499, 730, 862, 2542, 3662
BcuI ACTAGT 1 cut(s) 1915
BfmI CTRYAG 5 cut(s) 130, 207, 624, 2409, 2526
BfoI RGCGCY 2 cut(s) 2631, 3450
BfuI GTATCC 1 cut(s) 2207
BglII AGATCT 1 cut(s) 2824
BisI GCNGC 9 cut(s) 133, 294, 850, 1374, 1992, 2429, 2526, 3279, 3288
BlpI GCTNAGC 1 cut(s) 3536
BlsI GCNGC 9 cut(s) 134, 295, 851, 1375, 1993, 2430, 2527, 3280, 3289
BmcAI AGTACT 1 cut(s) 314
Bme1390I CCNGG 4 cut(s) 552, 984, 1123, 3431
Bme18I GGWCC 4 cut(s) 2602, 2612, 3044, 3626
BmeRI GACNNNNNGTC 1 cut(s) 1555
BmeT110I CYCGRG 1 cut(s) 3396
BmgBI CACGTC 2 cut(s) 569, 3131
BmgT120I GGNCC 5 cut(s) 2004, 2602, 2612, 3044, 3626
BmiI GGNNCC 7 cut(s) 88, 160, 841, 853, 2005, 3045, 3627
BmrFI CCNGG 4 cut(s) 552, 984, 1123, 3431
BmsI GCATC 9 cut(s) 242, 591, 1336, 1358, 1814, 2287, 2376, 2833, 3251
BmtI GCTAGC 1 cut(s) 749
BoxI GACNNNNGTC 1 cut(s) 1104
BplI GAGNNNNNCTC 2 cut(s) 1203, 1235
BpmI CTGGAG 2 cut(s) 1230, 3644
Bpu10I CCTNAGC 2 cut(s) 750, 1984
Bpu1102I GCTNAGC 1 cut(s) 3536
Bpu14I TTCGAA 2 cut(s) 652, 2548
BpuEI CTTGAG 2 cut(s) 1040, 3509
BpuMI CCSGG 1 cut(s) 1123
Bsa29I ATCGAT 3 cut(s) 1313, 1352, 3123
BsaAI YACGTR 2 cut(s) 1054, 3218
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 5 cut(s) 550, 835, 982, 1377, 2615
BsaXI ACNNNNNCTCC 6 cut(s) 760, 790, 824, 854, 3573, 3603
Bsc4I CCNNNNNNNGG 8 cut(s) 1208, 1294, 1432, 1904, 2080, 2808, 3106, 3107
Bse118I RCCGGY 1 cut(s) 1294
Bse1I ACTGG 3 cut(s) 387, 1696, 2432
Bse21I CCTNAGG 1 cut(s) 1899
Bse3DI GCAATG 1 cut(s) 778
BseBI CCWGG 3 cut(s) 552, 984, 3431
BseCI ATCGAT 3 cut(s) 1313, 1352, 3123
BseDI CCNNGG 5 cut(s) 550, 835, 982, 1377, 2615
BseGI GGATG 9 cut(s) 66, 534, 828, 1118, 1351, 1909, 2337, 3439, 3543
BseLI CCNNNNNNNGG 8 cut(s) 1208, 1294, 1432, 1904, 2080, 2808, 3106, 3107
BseMI GCAATG 1 cut(s) 778
BseMII CTCAG 6 cut(s) 439, 876, 945, 1008, 1445, 1545
BseNI ACTGG 3 cut(s) 387, 1696, 2432
BseRI GAGGAG 7 cut(s) 151, 530, 617, 850, 1047, 1461, 3252
BseSI GKGCMC 1 cut(s) 574
BseXI GCAGC 7 cut(s) 144, 1360, 2003, 2440, 2512, 3290, 3299
BseYI CCCAGC 2 cut(s) 2807, 3206
BsgI GTGCAG 2 cut(s) 2010, 2447
Bsh1236I CGCG 6 cut(s) 44, 600, 2463, 2617, 3389, 3485
Bsh1285I CGRYCG 3 cut(s) 1206, 3039, 3393
BshFI GGCC 5 cut(s) 1467, 1728, 2006, 2502, 2977
BshNI GGYRCC 1 cut(s) 851
BshVI ATCGAT 3 cut(s) 1313, 1352, 3123
BsiEI CGRYCG 3 cut(s) 1206, 3039, 3393
BsiHKCI CYCGRG 1 cut(s) 3396
BsiSI CCGG 3 cut(s) 1122, 1295, 2894
BslFI GGGAC 7 cut(s) 965, 2677, 2824, 2900, 2946, 3223, 3359
BslI CCNNNNNNNGG 8 cut(s) 1208, 1294, 1432, 1904, 2080, 2808, 3106, 3107
BsmAI GTCTC 8 cut(s) 83, 280, 397, 499, 730, 862, 2542, 3662
BsmBI CGTCTC 1 cut(s) 862
BsmFI GGGAC 7 cut(s) 965, 2677, 2824, 2900, 2946, 3223, 3359
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 5 cut(s) 1467, 1728, 2006, 2502, 2977
Bso31I GGTCTC 1 cut(s) 83
BsoBI CYCGRG 1 cut(s) 3396
Bsp119I TTCGAA 2 cut(s) 652, 2548
Bsp1286I GDGCHC 1 cut(s) 574
Bsp1720I GCTNAGC 1 cut(s) 3536
Bsp19I CCATGG 1 cut(s) 835
Bsp68I TCGCGA 1 cut(s) 3389
BspANI GGCC 5 cut(s) 1467, 1728, 2006, 2502, 2977
BspCNI CTCAG 6 cut(s) 438, 875, 944, 1007, 1444, 1546
BspDI ATCGAT 3 cut(s) 1313, 1352, 3123
BspFNI CGCG 6 cut(s) 44, 600, 2463, 2617, 3389, 3485
BspHI TCATGA 1 cut(s) 3298
BspLI GGNNCC 7 cut(s) 88, 160, 841, 853, 2005, 3045, 3627
BspMAI CTGCAG 2 cut(s) 134, 2530
BspOI GCTAGC 1 cut(s) 749
BspPI GGATC 7 cut(s) 541, 1162, 1193, 1702, 2102, 2588, 2845
BspT104I TTCGAA 2 cut(s) 652, 2548
BspT107I GGYRCC 1 cut(s) 851
BspTNI GGTCTC 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 3401
BsrDI GCAATG 1 cut(s) 778
BsrFI RCCGGY 1 cut(s) 1294
BsrI ACTGG 3 cut(s) 387, 1696, 2432
BssAI RCCGGY 1 cut(s) 1294
BssECI CCNNGG 5 cut(s) 550, 835, 982, 1377, 2615
BssSI CACGAG 2 cut(s) 1491, 1858
BssT1I CCWWGG 2 cut(s) 835, 1377
Bst2BI CACGAG 2 cut(s) 1491, 1858
Bst2UI CCWGG 3 cut(s) 552, 984, 3431
Bst4CI ACNGT 7 cut(s) 50, 193, 658, 856, 1132, 1171, 2909
Bst6I CTCTTC 2 cut(s) 2, 1788
BstBAI YACGTR 2 cut(s) 1054, 3218
BstBI TTCGAA 2 cut(s) 652, 2548
BstC8I GCNNGC 5 cut(s) 42, 475, 747, 2065, 2632
BstDSI CCRYGG 2 cut(s) 835, 2615
BstF5I GGATG 9 cut(s) 66, 534, 828, 1118, 1351, 1909, 2337, 3439, 3543
BstFNI CGCG 6 cut(s) 44, 600, 2463, 2617, 3389, 3485
BstH2I RGCGCY 2 cut(s) 2631, 3450
BstHHI GCGC 5 cut(s) 709, 1544, 2630, 3449, 3487
BstMAI GTCTC 8 cut(s) 83, 280, 397, 499, 730, 862, 2542, 3662
BstMCI CGRYCG 3 cut(s) 1206, 3039, 3393
BstNI CCWGG 3 cut(s) 552, 984, 3431
BstNSI RCATGY 4 cut(s) 1970, 2376, 2482, 3339
BstPAI GACNNNNGTC 1 cut(s) 1104
BstSCI CCNGG 4 cut(s) 550, 982, 1121, 3429
BstSFI CTRYAG 5 cut(s) 130, 207, 624, 2409, 2526
BstSLI GKGCMC 1 cut(s) 574
BstUI CGCG 6 cut(s) 44, 600, 2463, 2617, 3389, 3485
BstV1I GCAGC 7 cut(s) 144, 1360, 2003, 2440, 2512, 3290, 3299
BstX2I RGATCY 2 cut(s) 2094, 2824
BstYI RGATCY 2 cut(s) 2094, 2824
Bsu15I ATCGAT 3 cut(s) 1313, 1352, 3123
Bsu36I CCTNAGG 1 cut(s) 1899
BsuI GTATCC 1 cut(s) 2207
BsuRI GGCC 5 cut(s) 1467, 1728, 2006, 2502, 2977
BsuTUI ATCGAT 3 cut(s) 1313, 1352, 3123
BtgI CCRYGG 2 cut(s) 835, 2615
BtrI CACGTC 2 cut(s) 569, 3131
BtsCI GGATG 9 cut(s) 66, 534, 828, 1118, 1351, 1909, 2337, 3439, 3543
BtsI GCAGTG 2 cut(s) 330, 2367
BtsIMutI CAGTG 7 cut(s) 330, 394, 433, 2055, 2367, 2439, 2862
BtuMI TCGCGA 1 cut(s) 3389
Cac8I GCNNGC 5 cut(s) 42, 475, 747, 2065, 2632
CaiI CAGNNNCTG 1 cut(s) 2534
CciI TCATGA 1 cut(s) 3298
CfoI GCGC 5 cut(s) 709, 1544, 2630, 3449, 3487
Cfr10I RCCGGY 1 cut(s) 1294
Cfr13I GGNCC 5 cut(s) 2004, 2602, 2612, 3044, 3626
Cfr42I CCGCGG 1 cut(s) 2618
ClaI ATCGAT 3 cut(s) 1313, 1352, 3123
CseI GACGC 3 cut(s) 865, 2841, 3491
Csp6I GTAC 9 cut(s) 313, 562, 811, 1451, 1605, 2009, 2170, 2345, 2784
CspCI CAANNNNNGTGG 4 cut(s) 136, 171, 1238, 1273
CviQI GTAC 9 cut(s) 313, 562, 811, 1451, 1605, 2009, 2170, 2345, 2784
DraI TTTAAA 1 cut(s) 1930
DrdI GACNNNNNNGTC 1 cut(s) 2912
DriI GACNNNNNGTC 1 cut(s) 1555
DseDI GACNNNNNNGTC 1 cut(s) 2912
EaeI YGGCCR 1 cut(s) 1726
Eam1104I CTCTTC 2 cut(s) 2, 1788
Eam1105I GACNNNNNGTC 1 cut(s) 1555
EarI CTCTTC 2 cut(s) 2, 1788
Eco130I CCWWGG 2 cut(s) 835, 1377
Eco31I GGTCTC 1 cut(s) 83
Eco32I GATATC 2 cut(s) 1176, 3013
Eco47I GGWCC 4 cut(s) 2602, 2612, 3044, 3626
Eco47III AGCGCT 1 cut(s) 3448
Eco72I CACGTG 1 cut(s) 1054
Eco81I CCTNAGG 1 cut(s) 1899
Eco88I CYCGRG 1 cut(s) 3396
EcoRI GAATTC 2 cut(s) 1043, 2260
EcoRII CCWGG 3 cut(s) 550, 982, 3429
EcoRV GATATC 2 cut(s) 1176, 3013
EcoT14I CCWWGG 2 cut(s) 835, 1377
EcoT22I ATGCAT 2 cut(s) 1351, 1972
ErhI CCWWGG 2 cut(s) 835, 1377
Esp3I CGTCTC 1 cut(s) 862
FalI AAGNNNNNCTT 2 cut(s) 3471, 3503
FaqI GGGAC 7 cut(s) 965, 2677, 2824, 2900, 2946, 3223, 3359
FauI CCCGC 3 cut(s) 2639, 3044, 3335
FblI GTMKAC 2 cut(s) 660, 3029
Fnu4HI GCNGC 9 cut(s) 133, 294, 850, 1374, 1992, 2429, 2526, 3279, 3288
FokI GGATG 9 cut(s) 73, 521, 835, 1105, 1358, 1916, 2344, 3446, 3530
Fsp4HI GCNGC 9 cut(s) 133, 294, 850, 1374, 1992, 2429, 2526, 3279, 3288
GlaI GCGC 5 cut(s) 708, 1543, 2629, 3448, 3486
GluI GCNGC 9 cut(s) 133, 294, 850, 1374, 1992, 2429, 2526, 3279, 3288
GsaI CCCAGC 2 cut(s) 2811, 3210
GsuI CTGGAG 2 cut(s) 1230, 3644
HaeII RGCGCY 2 cut(s) 2631, 3450
HaeIII GGCC 5 cut(s) 1467, 1728, 2006, 2502, 2977
HapII CCGG 3 cut(s) 1122, 1295, 2894
HgaI GACGC 3 cut(s) 865, 2841, 3491
HhaI GCGC 5 cut(s) 709, 1544, 2630, 3449, 3487
Hin6I GCGC 5 cut(s) 707, 1542, 2628, 3447, 3485
HinP1I GCGC 5 cut(s) 707, 1542, 2628, 3447, 3485
HincII GTYRAC 2 cut(s) 3030, 3167
HindII GTYRAC 2 cut(s) 3030, 3167
HindIII AAGCTT 1 cut(s) 725
HpaII CCGG 3 cut(s) 1122, 1295, 2894
HphI GGTGA 9 cut(s) 107, 253, 733, 871, 1054, 1500, 1616, 2320, 2336
Hpy166II GTNNAC 9 cut(s) 661, 1062, 1751, 2130, 2519, 2720, 2956, 3030, 3167
Hpy8I GTNNAC 9 cut(s) 661, 1062, 1751, 2130, 2519, 2720, 2956, 3030, 3167
Hpy99I CGWCG 1 cut(s) 3260
HpyAV CCTTC 5 cut(s) 251, 892, 1001, 1532, 2603
HpyCH4III ACNGT 7 cut(s) 50, 193, 658, 856, 1132, 1171, 2909
HspAI GCGC 5 cut(s) 707, 1542, 2628, 3447, 3485
KspI CCGCGG 1 cut(s) 2618
LmnI GCTCC 8 cut(s) 86, 164, 768, 845, 3239, 3432, 3581, 3635
Lsp1109I GCAGC 7 cut(s) 144, 1360, 2003, 2440, 2512, 3290, 3299
LweI GCATC 9 cut(s) 242, 591, 1336, 1358, 1814, 2287, 2376, 2833, 3251
MaeIII GTNAC 9 cut(s) 344, 361, 398, 435, 877, 1421, 1911, 2568, 2909
MbiI CCGCTC 1 cut(s) 3401
MboII GAAGA 9 cut(s) 19, 347, 691, 694, 1715, 1805, 2022, 2749, 3029
MfeI CAATTG 3 cut(s) 1485, 2379, 3359
MflI RGATCY 2 cut(s) 2094, 2824
MhlI GDGCHC 1 cut(s) 574
MluI ACGCGT 1 cut(s) 2461
MlyI GAGTC 6 cut(s) 501, 986, 987, 1544, 1565, 1903
MmeI TCCRAC 2 cut(s) 800, 2973
Mph1103I ATGCAT 2 cut(s) 1351, 1972
MroXI GAANNNNTTC 1 cut(s) 1848
MslI CAYNNNNRTG 2 cut(s) 587, 1785
MspA1I CMGCKG 1 cut(s) 2617
MspI CCGG 3 cut(s) 1122, 1295, 2894
MspR9I CCNGG 4 cut(s) 552, 984, 1123, 3431
MunI CAATTG 3 cut(s) 1485, 2379, 3359
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 3 cut(s) 552, 984, 3431
MvnI CGCG 6 cut(s) 44, 600, 2463, 2617, 3389, 3485
NciI CCSGG 1 cut(s) 1123
NcoI CCATGG 1 cut(s) 835
NheI GCTAGC 1 cut(s) 745
NlaIV GGNNCC 7 cut(s) 88, 160, 841, 853, 2005, 3045, 3627
NmuCI GTSAC 4 cut(s) 398, 877, 1911, 2568
NruI TCGCGA 1 cut(s) 3389
NsiI ATGCAT 2 cut(s) 1351, 1972
NspI RCATGY 4 cut(s) 1970, 2376, 2482, 3339
NspV TTCGAA 2 cut(s) 652, 2548
PaeR7I CTCGAG 1 cut(s) 3396
PagI TCATGA 1 cut(s) 3298
PciI ACATGT 2 cut(s) 2372, 3335
PctI GAATGC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 1848
PfeI GAWTC 8 cut(s) 916, 1191, 1216, 1772, 2403, 3090, 3260, 3384
PfoI TCCNGGA 2 cut(s) 1121, 3429
PkrI GCNGC 9 cut(s) 134, 295, 851, 1375, 1993, 2430, 2527, 3280, 3289
Ple19I CGATCG 3 cut(s) 1206, 3039, 3393
PleI GAGTC 6 cut(s) 501, 986, 986, 1544, 1564, 1902
PmaCI CACGTG 1 cut(s) 1054
PmlI CACGTG 1 cut(s) 1054
PpsI GAGTC 6 cut(s) 501, 986, 986, 1544, 1564, 1902
Ppu21I YACGTR 2 cut(s) 1054, 3218
PscI ACATGT 2 cut(s) 2372, 3335
PshAI GACNNNNGTC 1 cut(s) 1104
PshBI ATTAAT 1 cut(s) 1239
PsiI TTATAA 1 cut(s) 2681
Psp1406I AACGTT 2 cut(s) 2228, 3197
Psp6I CCWGG 3 cut(s) 550, 982, 3429
PspCI CACGTG 1 cut(s) 1054
PspFI CCCAGC 2 cut(s) 2807, 3206
PspGI CCWGG 3 cut(s) 550, 982, 3429
PspN4I GGNNCC 7 cut(s) 88, 160, 841, 853, 2005, 3045, 3627
PspPI GGNCC 5 cut(s) 2004, 2602, 2612, 3044, 3626
PspXI VCTCGAGB 1 cut(s) 3396
PstI CTGCAG 2 cut(s) 134, 2530
PstNI CAGNNNCTG 1 cut(s) 2534
PsuI RGATCY 2 cut(s) 2094, 2824
PvuI CGATCG 3 cut(s) 1206, 3039, 3393
RgaI GCGATCGC 1 cut(s) 3393
RruI TCGCGA 1 cut(s) 3389
RsaI GTAC 9 cut(s) 314, 563, 812, 1452, 1606, 2010, 2171, 2346, 2785
RsaNI GTAC 9 cut(s) 313, 562, 811, 1451, 1605, 2009, 2170, 2345, 2784
RseI CAYNNNNRTG 2 cut(s) 587, 1785
SacII CCGCGG 1 cut(s) 2618
SalI GTCGAC 1 cut(s) 3028
SatI GCNGC 9 cut(s) 133, 294, 850, 1374, 1992, 2429, 2526, 3279, 3288
Sau96I GGNCC 5 cut(s) 2004, 2602, 2612, 3044, 3626
ScaI AGTACT 1 cut(s) 314
SchI GAGTC 6 cut(s) 501, 986, 987, 1544, 1565, 1903
ScrFI CCNGG 4 cut(s) 552, 984, 1123, 3431
SduI GDGCHC 1 cut(s) 574
SfaAI GCGATCGC 1 cut(s) 3393
SfaNI GCATC 9 cut(s) 242, 591, 1336, 1358, 1814, 2287, 2376, 2833, 3251
SfcI CTRYAG 5 cut(s) 130, 207, 624, 2409, 2526
Sfr274I CTCGAG 1 cut(s) 3396
Sfr303I CCGCGG 1 cut(s) 2618
SfuI TTCGAA 2 cut(s) 652, 2548
SgfI GCGATCGC 1 cut(s) 3393
SgrBI CCGCGG 1 cut(s) 2618
SinI GGWCC 4 cut(s) 2602, 2612, 3044, 3626
SlaI CTCGAG 1 cut(s) 3396
SmiMI CAYNNNNRTG 2 cut(s) 587, 1785
SmlI CTYRAG 3 cut(s) 1019, 3396, 3488
SmoI CTYRAG 3 cut(s) 1019, 3396, 3488
SpeI ACTAGT 1 cut(s) 1915
SspI AATATT 4 cut(s) 33, 926, 2545, 2766
StyD4I CCNGG 4 cut(s) 550, 982, 1121, 3429
StyI CCWWGG 2 cut(s) 835, 1377
TaaI ACNGT 7 cut(s) 50, 193, 658, 856, 1132, 1171, 2909
TaqII GACCGA 1 cut(s) 2105
TatI WGTACW 2 cut(s) 312, 1450
TauI GCSGC 2 cut(s) 296, 852
TfiI GAWTC 8 cut(s) 916, 1191, 1216, 1772, 2403, 3090, 3260, 3384
TscAI CASTG 7 cut(s) 330, 394, 433, 2055, 2367, 2439, 2862
TseFI GTSAC 4 cut(s) 398, 877, 1911, 2568
TseI GCWGC 7 cut(s) 132, 1373, 1991, 2428, 2525, 3278, 3287
Tsp45I GTSAC 4 cut(s) 398, 877, 1911, 2568
TspGWI ACGGA 5 cut(s) 579, 828, 970, 1736, 2593
TspRI CASTG 7 cut(s) 330, 394, 433, 2055, 2367, 2439, 2862
VpaK11BI GGWCC 4 cut(s) 2602, 2612, 3044, 3626
VspI ATTAAT 1 cut(s) 1239
XapI RAATTY 5 cut(s) 1043, 1844, 2260, 2701, 2753
XbaI TCTAGA 3 cut(s) 1073, 1525, 2282
XceI RCATGY 4 cut(s) 1970, 2376, 2482, 3339
XcmI CCANNNNNNNNNTGG 1 cut(s) 1433
XhoI CTCGAG 1 cut(s) 3396
XmiI GTMKAC 2 cut(s) 660, 3029
XmnI GAANNNNTTC 1 cut(s) 1848
ZrmI AGTACT 1 cut(s) 314
Zsp2I ATGCAT 2 cut(s) 1351, 1972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.