Rh2AG615400

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000317
Physical Location & Seq
Forward (+)
84026454 .. 84028990
2537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG615400.1

Sequence Viewer

Length: 606 bp
ATGGGTCTAATAATTGCATGGAGGCTTGCCATACTCATCATTGCTGTCCAACCCATAGTCATCCTCAGCCTCTATGCTAAGCGTGTCCTACTCAAAAGAATATCCATCAGAGCCACCAAAGCCCAAGAGGAAAGTTGTAAGCTTGCAGCTGAAGCTATCTACAACCACCGGACTGTTACTGCCTTCTCGGGCCAGAACAGGATTTTGAAAATGCTAGACAAGGCCCAAGAAACCCCATGTAGAGAAAACCTGCGACAATCGTGGTTTGCAGGTATTGGACTCGGGTTCGCCGAGAGCATTACAGTCATCAATTGGGGGCTGAGTTATTGGTATGGCAGCATGCTTGTCCACCAAGGCTACCTTACTCCAAGATCAGTCTTTGAGACTATCCTCATTTTAGTAACTACCGGTCGGGTCATAGCAAATGCCAGAAGCATGACATCGGATCTTGCCATGGGCTTGGATGCAATCACGTCCATTTTTAGTATCTTAGACCGGACCACCAAAATCGAACACCGAGCTCCAGAAGAAGCCCAGCGCGGAAAACTGGGAGTTGAGCCGAGTCACGATAAATATGGGAGAGCCGGCCTGAGTGAGCTACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

201

Amino Acids

22.39

Weight (kDa)

9.61

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 1 - 132 2e-19 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 258, 260
AccII CGCG 1 cut(s) 540
AciI CCGC 1 cut(s) 540
AclWI GGATC 1 cut(s) 453
AcuI CTGAAG 1 cut(s) 171
AgeI ACCGGT 1 cut(s) 407
AgsI TTSAA 1 cut(s) 208
AjiI CACGTC 1 cut(s) 474
AluBI AGCT 5 cut(s) 142, 149, 155, 521, 598
AluI AGCT 5 cut(s) 142, 149, 155, 521, 598
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 1 cut(s) 453
Ama87I CYCGRG 2 cut(s) 187, 281
AoxI GGCC 3 cut(s) 190, 222, 586
ApeKI GCWGC 2 cut(s) 146, 336
AsiGI ACCGGT 1 cut(s) 407
AspLEI GCGC 1 cut(s) 540
AspS9I GGNCC 3 cut(s) 190, 223, 498
AvaI CYCGRG 2 cut(s) 187, 281
AvaII GGWCC 1 cut(s) 498
BanII GRGCYC 1 cut(s) 523
Bbv12I GWGCWC 1 cut(s) 523
BbvCI CCTCAGC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 158, 348
BccI CCATC 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 1 cut(s) 215
BfuAI ACCTGC 2 cut(s) 258, 260
BisI GCNGC 2 cut(s) 147, 337
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 2 cut(s) 148, 338
Bme18I GGWCC 1 cut(s) 498
BmeT110I CYCGRG 2 cut(s) 187, 281
BmgBI CACGTC 1 cut(s) 474
BmgT120I GGNCC 3 cut(s) 190, 223, 498
BmrI ACTGGG 1 cut(s) 557
BmsI GCATC 1 cut(s) 454
BmuI ACTGGG 1 cut(s) 557
BpmI CTGGAG 1 cut(s) 507
Bpu10I CCTNAGC 1 cut(s) 65
Bpu1102I GCTNAGC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 352, 453
BsaWI WCCGGW 3 cut(s) 168, 407, 495
Bse118I RCCGGY 2 cut(s) 407, 584
Bse1I ACTGG 1 cut(s) 552
Bse3DI GCAATG 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 352, 453
BseGI GGATG 2 cut(s) 60, 469
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 3 cut(s) 79, 311, 581
BseNI ACTGG 1 cut(s) 552
BseXI GCAGC 2 cut(s) 158, 348
BseYI CCCAGC 1 cut(s) 534
Bsh1236I CGCG 1 cut(s) 540
Bsh1285I CGRYCG 1 cut(s) 412
BshFI GGCC 3 cut(s) 192, 224, 588
BshTI ACCGGT 1 cut(s) 407
BsiEI CGRYCG 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 523
BsiHKCI CYCGRG 2 cut(s) 187, 281
BsiSI CCGG 4 cut(s) 169, 408, 496, 585
BsmAI GTCTC 1 cut(s) 377
BsnI GGCC 3 cut(s) 192, 224, 588
BsoBI CYCGRG 2 cut(s) 187, 281
Bsp1286I GDGCHC 1 cut(s) 523
Bsp143I GATC 2 cut(s) 371, 445
Bsp1720I GCTNAGC 1 cut(s) 78
Bsp19I CCATGG 1 cut(s) 453
BspACI CCGC 1 cut(s) 540
BspANI GGCC 3 cut(s) 192, 224, 588
BspCNI CTCAG 3 cut(s) 78, 312, 582
BspFNI CGCG 1 cut(s) 540
BspMI ACCTGC 2 cut(s) 258, 260
BspPI GGATC 1 cut(s) 453
BsrDI GCAATG 1 cut(s) 39
BsrFI RCCGGY 2 cut(s) 407, 584
BsrI ACTGG 1 cut(s) 552
BssAI RCCGGY 2 cut(s) 407, 584
BssECI CCNNGG 2 cut(s) 352, 453
BssMI GATC 2 cut(s) 371, 445
BssT1I CCWWGG 2 cut(s) 352, 453
Bst4CI ACNGT 2 cut(s) 175, 304
BstC8I GCNNGC 4 cut(s) 27, 144, 341, 586
BstDEI CTNAG 5 cut(s) 65, 78, 320, 490, 590
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 2 cut(s) 60, 469
BstFNI CGCG 1 cut(s) 540
BstHHI GCGC 1 cut(s) 540
BstKTI GATC 2 cut(s) 374, 448
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 2 cut(s) 371, 445
BstMCI CGRYCG 1 cut(s) 412
BstMWI GCNNNNNNNGC 2 cut(s) 119, 152
BstNSI RCATGY 1 cut(s) 343
BstUI CGCG 1 cut(s) 540
BstV1I GCAGC 2 cut(s) 158, 348
BstX2I RGATCY 1 cut(s) 445
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 1 cut(s) 445
BsuRI GGCC 3 cut(s) 192, 224, 588
BtgI CCRYGG 1 cut(s) 453
BtrI CACGTC 1 cut(s) 474
BtsCI GGATG 2 cut(s) 60, 469
BveI ACCTGC 2 cut(s) 258, 260
Cac8I GCNNGC 4 cut(s) 27, 144, 341, 586
CfoI GCGC 1 cut(s) 540
Cfr10I RCCGGY 2 cut(s) 407, 584
Cfr13I GGNCC 3 cut(s) 190, 223, 498
CspAI ACCGGT 1 cut(s) 407
CviAII CATG 5 cut(s) 18, 237, 340, 436, 454
DdeI CTNAG 5 cut(s) 65, 78, 320, 490, 590
DpnI GATC 2 cut(s) 373, 447
DpnII GATC 2 cut(s) 371, 445
Ecl136II GAGCTC 1 cut(s) 521
Eco130I CCWWGG 2 cut(s) 352, 453
Eco24I GRGCYC 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 498
Eco53kI GAGCTC 1 cut(s) 521
Eco57I CTGAAG 1 cut(s) 171
Eco88I CYCGRG 2 cut(s) 187, 281
EcoICRI GAGCTC 1 cut(s) 521
EcoT14I CCWWGG 2 cut(s) 352, 453
EcoT38I GRGCYC 1 cut(s) 523
ErhI CCWWGG 2 cut(s) 352, 453
FaeI CATG 5 cut(s) 21, 240, 343, 439, 457
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FatI CATG 5 cut(s) 17, 236, 339, 435, 453
Fnu4HI GCNGC 2 cut(s) 147, 337
FokI GGATG 2 cut(s) 47, 476
FriOI GRGCYC 1 cut(s) 523
Fsp4HI GCNGC 2 cut(s) 147, 337
FspBI CTAG 1 cut(s) 215
GlaI GCGC 1 cut(s) 539
GluI GCNGC 2 cut(s) 147, 337
GsaI CCCAGC 1 cut(s) 538
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 3 cut(s) 192, 224, 588
HapII CCGG 4 cut(s) 169, 408, 496, 585
HhaI GCGC 1 cut(s) 540
Hin1II CATG 5 cut(s) 21, 240, 343, 439, 457
Hin6I GCGC 1 cut(s) 538
HinP1I GCGC 1 cut(s) 538
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 2 cut(s) 279, 562
HpaII CCGG 4 cut(s) 169, 408, 496, 585
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 2 cut(s) 110, 445
Hpy188III TCNNGA 2 cut(s) 524, 566
Hpy8I GTNNAC 1 cut(s) 349
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 2 cut(s) 175, 304
HpyCH4IV ACGT 1 cut(s) 473
HpyCH4V TGCA 4 cut(s) 17, 146, 269, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 152
HpyF3I CTNAG 5 cut(s) 65, 78, 320, 490, 590
HpySE526I ACGT 1 cut(s) 473
Hsp92II CATG 5 cut(s) 21, 240, 343, 439, 457
HspAI GCGC 1 cut(s) 538
KroI GCCGGC 1 cut(s) 584
KroNI GCCGGC 1 cut(s) 586
Kzo9I GATC 2 cut(s) 371, 445
LmnI GCTCC 1 cut(s) 526
Lsp1109I GCAGC 2 cut(s) 158, 348
LweI GCATC 1 cut(s) 454
MaeI CTAG 1 cut(s) 215
MaeII ACGT 1 cut(s) 473
MaeIII GTNAC 3 cut(s) 175, 400, 563
MalI GATC 2 cut(s) 373, 447
MboI GATC 2 cut(s) 371, 445
MboII GAAGA 1 cut(s) 539
MfeI CAATTG 1 cut(s) 310
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 2 cut(s) 12, 310
MlyI GAGTC 2 cut(s) 273, 571
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 5 cut(s) 15, 74, 80, 121, 401
MroNI GCCGGC 1 cut(s) 584
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 4 cut(s) 169, 408, 496, 585
MunI CAATTG 1 cut(s) 310
MvnI CGCG 1 cut(s) 540
MwoI GCNNNNNNNGC 2 cut(s) 119, 152
NaeI GCCGGC 1 cut(s) 586
NcoI CCATGG 1 cut(s) 453
NdeII GATC 2 cut(s) 371, 445
NgoMIV GCCGGC 1 cut(s) 584
NlaIII CATG 5 cut(s) 21, 240, 343, 439, 457
NmeAIII GCCGAG 2 cut(s) 316, 585
NmuCI GTSAC 1 cut(s) 563
NspI RCATGY 1 cut(s) 343
PaeI GCATGC 1 cut(s) 343
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PdiI GCCGGC 1 cut(s) 586
PinAI ACCGGT 1 cut(s) 407
PkrI GCNGC 2 cut(s) 148, 338
PleI GAGTC 2 cut(s) 273, 570
PpsI GAGTC 2 cut(s) 273, 570
Psp124BI GAGCTC 1 cut(s) 523
PspFI CCCAGC 1 cut(s) 534
PspPI GGNCC 3 cut(s) 190, 223, 498
PsuI RGATCY 1 cut(s) 445
PvuII CAGCTG 1 cut(s) 149
SacI GAGCTC 1 cut(s) 523
SatI GCNGC 2 cut(s) 147, 337
Sau3AI GATC 2 cut(s) 371, 445
Sau96I GGNCC 3 cut(s) 190, 223, 498
SchI GAGTC 2 cut(s) 273, 571
SduI GDGCHC 1 cut(s) 523
SetI ASST 9 cut(s) 144, 151, 157, 252, 274, 363, 476, 523, 600
SfaNI GCATC 1 cut(s) 454
SinI GGWCC 1 cut(s) 498
SphI GCATGC 1 cut(s) 343
Sse9I AATT 2 cut(s) 12, 310
SsiI CCGC 1 cut(s) 540
SspMI CTAG 1 cut(s) 215
SstI GAGCTC 1 cut(s) 523
StyI CCWWGG 2 cut(s) 352, 453
TaaI ACNGT 2 cut(s) 175, 304
TaiI ACGT 1 cut(s) 476
TaqI TCGA 1 cut(s) 510
TasI AATT 2 cut(s) 12, 310
TseFI GTSAC 1 cut(s) 563
TseI GCWGC 2 cut(s) 146, 336
Tsp45I GTSAC 1 cut(s) 563
VpaK11BI GGWCC 1 cut(s) 498
XceI RCATGY 1 cut(s) 343
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.