Rh5BG257900

Multidrug pheromone exporter, MDR family, ABC transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000317
Physical Location & Seq
Forward (+)
32206625 .. 32212076
5452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG257900.1

Sequence Viewer

Length: 3516 bp
ATGAGAATGAAGTATCTTAATTCTGTTCTCAAACAAGAAGTTTCCTTCTTTGACACCCAGACTGCTGGTTCTTCAACAACCTTCCAAGTTATTTCAATCATCTCCTCTGATGCCAATGCAGTCCAAGTTGCCTTATGCGAGAAGATACCTGACTGCATAGCATACATGTCAACTTTCTTCTTCTGCCATATATTTGCCTTCACACTTTCATGGAGGTTGGCCTTGGCTGCGATGCCACTTTCAATCTCGTTCATAGCTCCAGGGCTTTTCTTTGGAAGTATCTTGATGGGTCTTGTAATGAAGGGGATTGGGGCTTATGGAGTTGCCGGAGGGATTGCTGAACAAGCAATTTCTTCAGTAAGAACTGTATATTCATATGTTGGGGAGAACCAAACACTAAAGCGGTTCAGCATTGCACTTCAGACTGTTACGAAAATTGGAATCAAGGTGGGTCTTGTGAAAGGAATCCTGATGGGAAGCATGGGAATCATTTACGTCGGTTGGGGTTTTCAGGCATGGGTTGGGACTTATTTGGTTACTCAAAAAGGAGAAGATGGAGGGCATGTCTTCGTAGCCGGTTTCAATGTCCTCATGGGAGGCCTGAGTATTTTAAGTGCACTTCCAAATTTAACTGCCATCACAGAGGCATTAGCTGCTACAACACGAATTCTTGAAATGATTGACCGTGTTCCTAGTATTGAAACTGAAGACAGAAAGGGGAAGGCTTTGTCACATGTGAGAGGAGAAATAGAGTTCCAGGACATATACTTCAGTTACCCATCAAGACCTGACAGCCAAGTCTTACAAGGCTTGAATCTTAAGATTCCGGCTGGTAAGAGTGTAGGTCTAGTTGGGGGAAGTGGCTCTGGCAAGTCGACAATCATTTCATTGATCGAAAGATTTTATGACCCGGTTGAAGGAGAAATACTCTTGGATGGACATGCAATCAGAAGACTTCAACCGAAATGGTTGAGATCCCAAATGGGTTTAGTTAATCAGGAACCTGTTCTGTTTGCAACTTCCATAAGAGAGAACATACTTTTCGGAAAGGAAGGAGCTTCAATGGATGAAATAACAAATGCAGCTAAAGCTGCAAATGCACATGACTTCATTGTCAAGTTACCTGATGGATATGAAACTCAAGCTGGTCAATTTGGATTCCAACTGTCTGGTGGGCAAAAGCAGCGAATAGCCATAGCGAGAGCTCTGCTCAGGAATCCGAAAATCTTACTTCTTGATGAAGCAACTAGTGCATTGGATGCACAGTCTGAAAGAGTAGTTCAGGAGGCAATTGATCAAGCATCAAAAGGGAGGACAACAATCATTATTGCCCATCGCCTGTCAACAATCCGAACAGCAAACTTGATTGTGGTTCTTCAATCTGGGAAAGTAATTGAATCAGGCTCGCACAATGAGCTAATGAGAAAGAATGGGGAGCAGAGAGGTGAATACTTAAAGATGGTCCAGTTGCAGCAGATGGCAACCCAAAATGAAGATCCAGAGGATAGTCAAGTATATGAAAAACCTCGGCGTAGGAGGAGTGTTGCACCAAGCCCCATTAGTGCCCGATCTAGTACTCACAACACTCCAATATACTCCTTCAGTGGTACCGGAATGTCCATCTCTATGGGTACCCCCGTGTCCATGGGGACACCCAGGTCCACCATGGGCACACCCTATTCGTTCTCTGTCCAATACGATCCTGATGATGGGAGTTATGATGAAGACTTAAAGAACTCAACTTATCCTCCTCCTTCTCAATGGCGCCTGCTGAAGATGAATGCACCAGAGTGGGGACAAGCATTACTTGGATGCTTGGGTGCAATAGGTTCTGGAGCAGTACAACCTATTAATGCCTACTGTGTAGGCTCACTTATATCAGTCTACTTCCTCCAGGATAAATCAGAAATCAAGTCCCAATCAAGAGTCTTGACCTTTGTTTTCATAGGCATTGGTGTTTTCAACTTCATCACCAATCTCATCCAACACTATAACTTTGCAATTATGGGAGAAAAGTTGACCACAAGGGTAAGAGAGCAACTGCTTGAAAAGCTTATGACGTTCGAAATTGGGTGGTTTGATGAAGATGAGAACACAAGTGCAGCTATCTGTGCAAGGCTAGCCACTGAAGTAAACATGGTTCGATCTCTTGTTGGTGACAGAATGTCATTGCTGGTCCAAGCAGTTTTCGGGGCTACCTTTGCTTACACAGTAGGACTTGTGCTGACATGGAGACTATCCCTTGTGATGATAGCGGTGCAGCCACTAGTCATTGGGAGCTTTTATGCAAGGAGTATCTTGATGAAGAGTATGGGTGAGAAGGCGAGAAAAGCTCAAAAAGAAGGAAGCCAATTGGCAAGTGAAGCTGTCATTAACCACAGAACTATAACAGCCTTCTCTTCACAGAAAAAGATTCTGGGGCTGTTTGGTGCAACCTTGGCTGGTCCTAAGAAGGAGAGTATCAAGCAATCCTATGTTTCTGGTGCTGGCTTGTTTAGCTCCCAATTCTTTAACACGGCGGCTACAGCTTTAGCCTACTGGTATGGTGGGAGGCTACTGGTGCTAGAGTTGATAACCCCAAAGCATCTTTTTCAGGCCTTCTTGATATTGCTGTTCACTGCTTATATTATTGCAGAAGCTGGAAGCATGACTTCTGATATATCTAAAGGGGCCAATGCCATTCAAGCGGTTTTTGCAATTTTAGATAGGAAAACTGAGATTGATCCGGACAACAAATGGGGACTGGAGATAAAGAGGAGGATGAAGGGGCGTGTCGAGCTCAAAAATGTTTTCTTTGCATATCCAACAAGACCTCAGCAGATGATTCTTAAGGGACTGAGCCTCAGGATTGATGCAGGCAAAACTGTGGCACTAGTTGGGCAGAGTGGTTCAGGCAAATCCACCATTATTGGGCTGATTGAGAGGTTTTATGATCCAATGAAGGGATCAGTATTTATAGATGAGCAGGATATTAAGAACTACAACTTGAGACTGCTAAGGGCACATGTAGCCTTGGTTAGTCAGGAGCCTACTTTGTTTGCTGGAACTATCCGTGAAAATATCGCCTATGGTAAAGAGAATTCAAAGGAATCTGATATAAAGAGGGCTGCAGTTCTGGCCAATGCTCATGAATTTATAAGTGGGATGAATGATGGTTATAACACATACTGTGGAGAGAGAGGAGTTCAGCTATCAGGAGGCCAGAAACAAAGGATTGCACTAGCTCGGGCGATTCTGAAGAATCCATCAATCCTCCTCCTGGATGAGGCCACAAGTGCACTTGACAGCGTGTCAGAAAACGCAGTTCAAGAAGCACTAGAGAAGATGATGGTTAAGAGAACATGTATAGTCATTGCTCACCGGCTATCCACAATACAGAAGGCCAACTCCATTGCTGTGATAAAGAATGGAAAGGTTGCGGAACAAGGTTCACATAACGAACTGATTTCATTAGGGCGCAACGGAGCATATTACTCACTGATAAAGCTACAAACTGGTAGCTCACCTCCAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1171

Amino Acids

127.96

Weight (kDa)

9.25

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 1 - 199 7.8e-27 ABC transporter transmembrane region
ABC_tran PF00005 268 - 417 2e-33 ABC transporter
ABC_membrane PF00664 603 - 874 6.1e-45 ABC transporter transmembrane region
ABC_tran PF00005 943 - 1092 1.1e-32 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 3137, 3159
AasI GACNNNNNNGTC 3 cut(s) 797, 1112, 1657
Acc65I GGTACC 2 cut(s) 1607, 1631
AccB1I GGYRCC 3 cut(s) 1607, 1631, 1764
AccI GTMKAC 2 cut(s) 875, 1884
AccIII TCCGGA 1 cut(s) 2725
AciI CCGC 5 cut(s) 403, 2255, 2519, 2687, 3419
AclWI GGATC 6 cut(s) 969, 1490, 1694, 2717, 2927, 2953
AcoI YGGCCR 1 cut(s) 3117
AcsI RAATTY 4 cut(s) 625, 666, 3079, 3131
AcuI CTGAAG 8 cut(s) 339, 404, 726, 754, 1585, 1793, 2148, 3257
AcyI GRCGYC 1 cut(s) 1765
AfaI GTAC 4 cut(s) 1576, 1609, 1633, 1842
AfiI CCNNNNNNNGG 7 cut(s) 917, 1709, 1793, 2910, 2942, 3259, 3265
AflII CTTAAG 2 cut(s) 818, 2828
AflIII ACRYGT 4 cut(s) 165, 733, 3004, 3341
AhdI GACNNNNNGTC 2 cut(s) 2164, 3289
AhlI ACTAGT 3 cut(s) 1247, 2266, 2872
AjnI CCWGG 5 cut(s) 259, 756, 1655, 1893, 3258
AleI CACNNNNGTG 1 cut(s) 1789
Alw21I GWGCWC 4 cut(s) 619, 1207, 2781, 3280
Alw26I GTCTC 2 cut(s) 2227, 2983
Alw44I GTGCAC 2 cut(s) 615, 3276
AlwI GGATC 6 cut(s) 969, 1490, 1694, 2717, 2927, 2953
AlwNI CAGNNNCTG 1 cut(s) 2639
Ama87I CYCGRG 1 cut(s) 3225
Aor13HI TCCGGA 1 cut(s) 2725
AoxI GGCC 8 cut(s) 219, 598, 2595, 2670, 3117, 3199, 3267, 3381
ApaLI GTGCAC 2 cut(s) 615, 3276
ApeKI GCWGC 9 cut(s) 227, 653, 1082, 1091, 1183, 1471, 2102, 2260, 3107
ApoI RAATTY 4 cut(s) 625, 666, 3079, 3131
AseI ATTAAT 1 cut(s) 1851
Asp700I GAANNNNTTC 1 cut(s) 1005
Asp718I GGTACC 2 cut(s) 1607, 1631
AspLEI GCGC 2 cut(s) 1767, 3459
AspS9I GGNCC 5 cut(s) 1462, 1659, 2176, 2444, 2670
AsuC2I CCSGG 1 cut(s) 911
AsuHPI GGTGA 6 cut(s) 1457, 1963, 2168, 2327, 3350, 3495
AsuII TTCGAA 1 cut(s) 2064
AsuNHI GCTAGC 1 cut(s) 2119
AvaI CYCGRG 1 cut(s) 3225
AvaII GGWCC 4 cut(s) 1462, 1659, 2176, 2444
AxyI CCTNAGG 1 cut(s) 2843
BaeGI GKGCMC 5 cut(s) 619, 1567, 1673, 3004, 3280
BaeI ACNNNNGTAYC 2 cut(s) 1623, 1656
BalI TGGCCA 1 cut(s) 3119
BanI GGYRCC 3 cut(s) 1607, 1631, 1764
BanII GRGCYC 2 cut(s) 1207, 2781
BarI GAAGNNNNNNTAC 2 cut(s) 909, 941
BbsI GAAGAC 4 cut(s) 559, 714, 958, 1731
Bbv12I GWGCWC 4 cut(s) 619, 1207, 2781, 3280
BbvCI CCTCAGC 1 cut(s) 2814
BbvI GCAGC 9 cut(s) 214, 640, 1078, 1094, 1195, 1483, 2114, 2272, 3094
BceAI ACGGC 1 cut(s) 2532
BcgI CGANNNNNNTGC 2 cut(s) 1189, 1223
BciT130I CCWGG 5 cut(s) 261, 758, 1657, 1895, 3260
BclI TGATCA 1 cut(s) 1294
BcnI CCSGG 1 cut(s) 911
BcoDI GTCTC 2 cut(s) 2227, 2983
BcuI ACTAGT 3 cut(s) 1247, 2266, 2872
BfmI CTRYAG 2 cut(s) 2523, 3108
BfoI RGCGCY 1 cut(s) 1768
BfrI CTTAAG 2 cut(s) 818, 2828
BmcAI AGTACT 1 cut(s) 1576
Bme1390I CCNGG 6 cut(s) 261, 758, 911, 1657, 1895, 3260
Bme18I GGWCC 4 cut(s) 1462, 1659, 2176, 2444
BmeRI GACNNNNNGTC 2 cut(s) 2164, 3289
BmeT110I CYCGRG 1 cut(s) 3225
BmgT120I GGNCC 5 cut(s) 1462, 1659, 2176, 2444, 2670
BmiI GGNNCC 6 cut(s) 1002, 1609, 1633, 1766, 2671, 3027
BmrFI CCNGG 6 cut(s) 261, 758, 911, 1657, 1895, 3260
BmsI GCATC 7 cut(s) 100, 222, 1249, 1310, 1802, 2593, 2842
BmtI GCTAGC 1 cut(s) 2123
BpiI GAAGAC 4 cut(s) 559, 714, 958, 1731
BplI GAGNNNNNCTC 6 cut(s) 912, 944, 1194, 1226, 2317, 2349
BpmI CTGGAG 4 cut(s) 243, 1854, 1877, 2765
Bpu10I CCTNAGC 3 cut(s) 1211, 2814, 2996
Bpu14I TTCGAA 1 cut(s) 2064
BpuEI CTTGAG 2 cut(s) 1125, 3007
BpuMI CCSGG 1 cut(s) 911
BsaHI GRCGYC 1 cut(s) 1765
BsaJI CCNNGG 9 cut(s) 222, 260, 1526, 1644, 1655, 1665, 2436, 3012, 3509
BsaWI WCCGGW 2 cut(s) 1610, 2725
BsaXI ACNNNNNCTCC 4 cut(s) 549, 579, 1732, 1762
Bsc4I CCNNNNNNNGG 7 cut(s) 917, 1709, 1793, 2910, 2942, 3259, 3265
Bse118I RCCGGY 2 cut(s) 575, 3360
Bse1I ACTGG 5 cut(s) 1465, 2543, 2562, 2748, 3499
Bse21I CCTNAGG 1 cut(s) 2843
Bse3DI GCAATG 4 cut(s) 411, 2168, 3351, 3390
BseAI TCCGGA 1 cut(s) 2725
BseBI CCWGG 5 cut(s) 261, 758, 1657, 1895, 3260
BseDI CCNNGG 9 cut(s) 222, 260, 1526, 1644, 1655, 1665, 2436, 3012, 3509
BseGI GGATG 8 cut(s) 940, 1072, 1264, 1817, 1980, 2766, 3150, 3268
BseLI CCNNNNNNNGG 7 cut(s) 917, 1709, 1793, 2910, 2942, 3259, 3265
BseMI GCAATG 4 cut(s) 411, 2168, 3351, 3390
BseMII CTCAG 6 cut(s) 593, 1225, 2706, 2828, 2828, 2857
BseNI ACTGG 5 cut(s) 1465, 2543, 2562, 2748, 3499
BseRI GAGGAG 7 cut(s) 94, 756, 1552, 1740, 2770, 3195, 3245
BseSI GKGCMC 5 cut(s) 619, 1567, 1673, 3004, 3280
BseXI GCAGC 9 cut(s) 214, 640, 1078, 1094, 1195, 1483, 2114, 2272, 3094
BsgI GTGCAG 2 cut(s) 2121, 2279
BshFI GGCC 8 cut(s) 221, 600, 2597, 2672, 3119, 3201, 3269, 3383
BshNI GGYRCC 3 cut(s) 1607, 1631, 1764
BsiHKAI GWGCWC 4 cut(s) 619, 1207, 2781, 3280
BsiHKCI CYCGRG 1 cut(s) 3225
BsiSI CCGG 7 cut(s) 327, 576, 827, 911, 1611, 2726, 3361
BslFI GGGAC 6 cut(s) 538, 1663, 1809, 1900, 2754, 2847
BslI CCNNNNNNNGG 7 cut(s) 917, 1709, 1793, 2910, 2942, 3259, 3265
BsmAI GTCTC 2 cut(s) 2227, 2983
BsmFI GGGAC 6 cut(s) 538, 1663, 1809, 1900, 2754, 2847
BsmI GAATGC 1 cut(s) 1786
BsnI GGCC 8 cut(s) 221, 600, 2597, 2672, 3119, 3201, 3269, 3383
BsoBI CYCGRG 1 cut(s) 3225
Bsp119I TTCGAA 1 cut(s) 2064
Bsp1286I GDGCHC 7 cut(s) 619, 1207, 1567, 1673, 2781, 3004, 3280
Bsp13I TCCGGA 1 cut(s) 2725
Bsp19I CCATGG 2 cut(s) 1644, 1665
BspACI CCGC 5 cut(s) 403, 2255, 2519, 2687, 3419
BspANI GGCC 8 cut(s) 221, 600, 2597, 2672, 3119, 3201, 3269, 3383
BspCNI CTCAG 6 cut(s) 594, 1224, 2707, 2827, 2829, 2856
BspEI TCCGGA 1 cut(s) 2725
BspHI TCATGA 1 cut(s) 3127
BspLI GGNNCC 6 cut(s) 1002, 1609, 1633, 1766, 2671, 3027
BspMAI CTGCAG 1 cut(s) 3112
BspOI GCTAGC 1 cut(s) 2123
BspPI GGATC 6 cut(s) 969, 1490, 1694, 2717, 2927, 2953
BspT104I TTCGAA 1 cut(s) 2064
BspT107I GGYRCC 3 cut(s) 1607, 1631, 1764
BspTI CTTAAG 2 cut(s) 818, 2828
BsrDI GCAATG 4 cut(s) 411, 2168, 3351, 3390
BsrFI RCCGGY 2 cut(s) 575, 3360
BsrI ACTGG 5 cut(s) 1465, 2543, 2562, 2748, 3499
BssAI RCCGGY 2 cut(s) 575, 3360
BssECI CCNNGG 9 cut(s) 222, 260, 1526, 1644, 1655, 1665, 2436, 3012, 3509
BssNI GRCGYC 1 cut(s) 1765
BssT1I CCWWGG 6 cut(s) 222, 1644, 1665, 2436, 3012, 3509
Bst2UI CCWGG 5 cut(s) 261, 758, 1657, 1895, 3260
Bst4CI ACNGT 9 cut(s) 367, 427, 686, 1167, 1266, 1862, 2212, 2866, 3170
Bst6I CTCTTC 2 cut(s) 2300, 2404
BstACI GRCGYC 1 cut(s) 1765
BstAFI CTTAAG 2 cut(s) 818, 2828
BstAPI GCANNNNNTGC 3 cut(s) 653, 1250, 1259
BstBI TTCGAA 1 cut(s) 2064
BstC8I GCNNGC 5 cut(s) 1406, 1769, 2121, 2488, 2857
BstDEI CTNAG 8 cut(s) 602, 1211, 2448, 2715, 2814, 2837, 2843, 2996
BstDSI CCRYGG 2 cut(s) 1644, 1665
BstENI CCTNNNNNAGG 1 cut(s) 3263
BstF5I GGATG 8 cut(s) 940, 1072, 1264, 1817, 1980, 2766, 3150, 3268
BstH2I RGCGCY 1 cut(s) 1768
BstHHI GCGC 2 cut(s) 1767, 3459
BstMAI GTCTC 2 cut(s) 2227, 2983
BstNI CCWGG 5 cut(s) 261, 758, 1657, 1895, 3260
BstNSI RCATGY 6 cut(s) 169, 566, 737, 944, 3008, 3345
BstSCI CCNGG 6 cut(s) 259, 756, 909, 1655, 1893, 3258
BstSFI CTRYAG 2 cut(s) 2523, 3108
BstSLI GKGCMC 5 cut(s) 619, 1567, 1673, 3004, 3280
BstV1I GCAGC 9 cut(s) 214, 640, 1078, 1094, 1195, 1483, 2114, 2272, 3094
BstV2I GAAGAC 4 cut(s) 559, 714, 958, 1731
BstX2I RGATCY 2 cut(s) 974, 1495
BstXI CCANNNNNNTGG 3 cut(s) 65, 1169, 1627
BstYI RGATCY 2 cut(s) 974, 1495
Bsu36I CCTNAGG 1 cut(s) 2843
BsuRI GGCC 8 cut(s) 221, 600, 2597, 2672, 3119, 3201, 3269, 3383
BtgI CCRYGG 2 cut(s) 1644, 1665
BtgZI GCGATG 2 cut(s) 245, 1319
BtsCI GGATG 8 cut(s) 940, 1072, 1264, 1817, 1980, 2766, 3150, 3268
BtsI GCAGTG 1 cut(s) 2616
BtsIMutI CAGTG 4 cut(s) 1609, 2124, 2616, 3476
Cac8I GCNNGC 5 cut(s) 1406, 1769, 2121, 2488, 2857
CaiI CAGNNNCTG 1 cut(s) 2639
CciI TCATGA 1 cut(s) 3127
CfoI GCGC 2 cut(s) 1767, 3459
Cfr10I RCCGGY 2 cut(s) 575, 3360
Cfr13I GGNCC 5 cut(s) 1462, 1659, 2176, 2444, 2670
Csp6I GTAC 4 cut(s) 1575, 1608, 1632, 1841
CspCI CAANNNNNGTGG 2 cut(s) 2890, 2925
CviQI GTAC 4 cut(s) 1575, 1608, 1632, 1841
DdeI CTNAG 8 cut(s) 602, 1211, 2448, 2715, 2814, 2837, 2843, 2996
DinI GGCGCC 1 cut(s) 1766
DrdI GACNNNNNNGTC 3 cut(s) 797, 1112, 1657
DriI GACNNNNNGTC 2 cut(s) 2164, 3289
DseDI GACNNNNNNGTC 3 cut(s) 797, 1112, 1657
EaeI YGGCCR 1 cut(s) 3117
Eam1104I CTCTTC 2 cut(s) 2300, 2404
Eam1105I GACNNNNNGTC 2 cut(s) 2164, 3289
EarI CTCTTC 2 cut(s) 2300, 2404
Ecl136II GAGCTC 2 cut(s) 1205, 2779
Eco130I CCWWGG 6 cut(s) 222, 1644, 1665, 2436, 3012, 3509
Eco147I AGGCCT 2 cut(s) 600, 2597
Eco24I GRGCYC 2 cut(s) 1207, 2781
Eco47I GGWCC 4 cut(s) 1462, 1659, 2176, 2444
Eco53kI GAGCTC 2 cut(s) 1205, 2779
Eco57I CTGAAG 8 cut(s) 339, 404, 726, 754, 1585, 1793, 2148, 3257
Eco81I CCTNAGG 1 cut(s) 2843
Eco88I CYCGRG 1 cut(s) 3225
EcoICRI GAGCTC 2 cut(s) 1205, 2779
EcoNI CCTNNNNNAGG 1 cut(s) 3263
EcoRI GAATTC 2 cut(s) 666, 3079
EcoRII CCWGG 5 cut(s) 259, 756, 1655, 1893, 3258
EcoT14I CCWWGG 6 cut(s) 222, 1644, 1665, 2436, 3012, 3509
EcoT38I GRGCYC 2 cut(s) 1207, 2781
EgeI GGCGCC 1 cut(s) 1766
EheI GGCGCC 1 cut(s) 1766
ErhI CCWWGG 6 cut(s) 222, 1644, 1665, 2436, 3012, 3509
FalI AAGNNNNNCTT 4 cut(s) 1791, 1823, 2635, 2667
FaqI GGGAC 6 cut(s) 538, 1663, 1809, 1900, 2754, 2847
FauNDI CATATG 1 cut(s) 376
FbaI TGATCA 1 cut(s) 1294
FblI GTMKAC 2 cut(s) 875, 1884
FokI GGATG 8 cut(s) 947, 1079, 1271, 1824, 1967, 2773, 3157, 3275
FriOI GRGCYC 2 cut(s) 1207, 2781
GlaI GCGC 2 cut(s) 1766, 3458
GsuI CTGGAG 4 cut(s) 243, 1854, 1877, 2765
HaeII RGCGCY 1 cut(s) 1768
HaeIII GGCC 8 cut(s) 221, 600, 2597, 2672, 3119, 3201, 3269, 3383
HapII CCGG 7 cut(s) 327, 576, 827, 911, 1611, 2726, 3361
HhaI GCGC 2 cut(s) 1767, 3459
Hin1I GRCGYC 1 cut(s) 1765
Hin6I GCGC 2 cut(s) 1765, 3457
HinP1I GCGC 2 cut(s) 1765, 3457
HincII GTYRAC 4 cut(s) 171, 876, 1344, 2019
HindII GTYRAC 4 cut(s) 171, 876, 1344, 2019
HindIII AAGCTT 1 cut(s) 2051
HpaII CCGG 7 cut(s) 327, 576, 827, 911, 1611, 2726, 3361
HphI GGTGA 6 cut(s) 1457, 1963, 2168, 2327, 3350, 3495
Hpy99I CGWCG 1 cut(s) 500
HpyCH4III ACNGT 9 cut(s) 367, 427, 686, 1167, 1266, 1862, 2212, 2866, 3170
HpyCH4IV ACGT 2 cut(s) 495, 2060
HpyF3I CTNAG 8 cut(s) 602, 1211, 2448, 2715, 2814, 2837, 2843, 2996
HpySE526I ACGT 2 cut(s) 495, 2060
Hsp92I GRCGYC 1 cut(s) 1765
HspAI GCGC 2 cut(s) 1765, 3457
KasI GGCGCC 1 cut(s) 1764
Kpn2I TCCGGA 1 cut(s) 2725
KpnI GGTACC 2 cut(s) 1611, 1635
Ksp22I TGATCA 1 cut(s) 1294
LmnI GCTCC 8 cut(s) 262, 1055, 1435, 1835, 2277, 2504, 3025, 3464
Lsp1109I GCAGC 9 cut(s) 214, 640, 1078, 1094, 1195, 1483, 2114, 2272, 3094
LweI GCATC 7 cut(s) 100, 222, 1249, 1310, 1802, 2593, 2842
MaeII ACGT 2 cut(s) 495, 2060
MaeIII GTNAC 6 cut(s) 427, 535, 729, 773, 1119, 2156
MfeI CAATTG 2 cut(s) 1290, 2351
MflI RGATCY 2 cut(s) 974, 1495
MhlI GDGCHC 7 cut(s) 619, 1207, 1567, 1673, 2781, 3004, 3280
MlsI TGGCCA 1 cut(s) 3119
MluNI TGGCCA 1 cut(s) 3119
Mly113I GGCGCC 1 cut(s) 1765
MlyI GAGTC 1 cut(s) 1935
MmeI TCCRAC 3 cut(s) 1186, 2008, 2828
Mox20I TGGCCA 1 cut(s) 3119
MroI TCCGGA 1 cut(s) 2725
MroXI GAANNNNTTC 1 cut(s) 1005
MscI TGGCCA 1 cut(s) 3119
MslI CAYNNNNRTG 4 cut(s) 208, 1625, 1789, 3395
Msp20I TGGCCA 1 cut(s) 3119
MspCI CTTAAG 2 cut(s) 818, 2828
MspI CCGG 7 cut(s) 327, 576, 827, 911, 1611, 2726, 3361
MspR9I CCNGG 6 cut(s) 261, 758, 911, 1657, 1895, 3260
MunI CAATTG 2 cut(s) 1290, 2351
Mva1269I GAATGC 1 cut(s) 1786
MvaI CCWGG 5 cut(s) 261, 758, 1657, 1895, 3260
NarI GGCGCC 1 cut(s) 1765
NciI CCSGG 1 cut(s) 911
NcoI CCATGG 2 cut(s) 1644, 1665
NdeI CATATG 1 cut(s) 376
NheI GCTAGC 1 cut(s) 2119
NlaIV GGNNCC 6 cut(s) 1002, 1609, 1633, 1766, 2671, 3027
NmeAIII GCCGAG 1 cut(s) 1507
NmuCI GTSAC 2 cut(s) 729, 2156
NspI RCATGY 6 cut(s) 169, 566, 737, 944, 3008, 3345
NspV TTCGAA 1 cut(s) 2064
OliI CACNNNNGTG 1 cut(s) 1789
PagI TCATGA 1 cut(s) 3127
PceI AGGCCT 2 cut(s) 600, 2597
PciI ACATGT 4 cut(s) 165, 733, 3004, 3341
PctI GAATGC 1 cut(s) 1786
PdmI GAANNNNTTC 1 cut(s) 1005
PfoI TCCNGGA 3 cut(s) 756, 1893, 3258
PleI GAGTC 1 cut(s) 1934
PluTI GGCGCC 1 cut(s) 1768
PpsI GAGTC 1 cut(s) 1934
PscI ACATGT 4 cut(s) 165, 733, 3004, 3341
PshBI ATTAAT 1 cut(s) 1851
PsiI TTATAA 2 cut(s) 3137, 3159
Psp124BI GAGCTC 2 cut(s) 1207, 2781
Psp6I CCWGG 5 cut(s) 259, 756, 1655, 1893, 3258
PspGI CCWGG 5 cut(s) 259, 756, 1655, 1893, 3258
PspN4I GGNNCC 6 cut(s) 1002, 1609, 1633, 1766, 2671, 3027
PspPI GGNCC 5 cut(s) 1462, 1659, 2176, 2444, 2670
PsrI GAACNNNNNNTAC 2 cut(s) 2124, 2156
PstI CTGCAG 1 cut(s) 3112
PstNI CAGNNNCTG 1 cut(s) 2639
PsuI RGATCY 2 cut(s) 974, 1495
RsaI GTAC 4 cut(s) 1576, 1609, 1633, 1842
RsaNI GTAC 4 cut(s) 1575, 1608, 1632, 1841
RseI CAYNNNNRTG 4 cut(s) 208, 1625, 1789, 3395
SacI GAGCTC 2 cut(s) 1207, 2781
SalI GTCGAC 1 cut(s) 874
Sau96I GGNCC 5 cut(s) 1462, 1659, 2176, 2444, 2670
ScaI AGTACT 1 cut(s) 1576
SchI GAGTC 1 cut(s) 1935
ScrFI CCNGG 6 cut(s) 261, 758, 911, 1657, 1895, 3260
SduI GDGCHC 7 cut(s) 619, 1207, 1567, 1673, 2781, 3004, 3280
SfaNI GCATC 7 cut(s) 100, 222, 1249, 1310, 1802, 2593, 2842
SfcI CTRYAG 2 cut(s) 2523, 3108
SfoI GGCGCC 1 cut(s) 1766
SfuI TTCGAA 1 cut(s) 2064
SinI GGWCC 4 cut(s) 1462, 1659, 2176, 2444
SmiMI CAYNNNNRTG 4 cut(s) 208, 1625, 1789, 3395
SmlI CTYRAG 4 cut(s) 818, 1140, 2828, 2986
SmoI CTYRAG 4 cut(s) 818, 1140, 2828, 2986
SpeI ACTAGT 3 cut(s) 1247, 2266, 2872
SseBI AGGCCT 2 cut(s) 600, 2597
SsiI CCGC 5 cut(s) 403, 2255, 2519, 2687, 3419
SspDI GGCGCC 1 cut(s) 1764
SstI GAGCTC 2 cut(s) 1207, 2781
StuI AGGCCT 2 cut(s) 600, 2597
StyD4I CCNGG 6 cut(s) 259, 756, 909, 1655, 1893, 3258
StyI CCWWGG 6 cut(s) 222, 1644, 1665, 2436, 3012, 3509
TaaI ACNGT 9 cut(s) 367, 427, 686, 1167, 1266, 1862, 2212, 2866, 3170
TaiI ACGT 2 cut(s) 498, 2063
TaqI TCGA 5 cut(s) 875, 894, 2064, 2143, 2775
TatI WGTACW 2 cut(s) 1574, 1840
TauI GCSGC 1 cut(s) 2522
TscAI CASTG 4 cut(s) 1609, 2131, 2623, 3483
TseFI GTSAC 2 cut(s) 729, 2156
TseI GCWGC 9 cut(s) 227, 653, 1082, 1091, 1183, 1471, 2102, 2260, 3107
Tsp45I GTSAC 2 cut(s) 729, 2156
TspGWI ACGGA 2 cut(s) 3041, 3477
TspRI CASTG 4 cut(s) 1609, 2131, 2623, 3483
Vha464I CTTAAG 2 cut(s) 818, 2828
VneI GTGCAC 2 cut(s) 615, 3276
VpaK11BI GGWCC 4 cut(s) 1462, 1659, 2176, 2444
VspI ATTAAT 1 cut(s) 1851
XagI CCTNNNNNAGG 1 cut(s) 3263
XapI RAATTY 4 cut(s) 625, 666, 3079, 3131
XceI RCATGY 6 cut(s) 169, 566, 737, 944, 3008, 3345
XcmI CCANNNNNNNNNTGG 2 cut(s) 1169, 1663
XmiI GTMKAC 2 cut(s) 875, 1884
XmnI GAANNNNTTC 1 cut(s) 1005
ZrmI AGTACT 1 cut(s) 1576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.