Rroxscaffold_2G00081770

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000317
Physical Location & Seq
Reverse (-)
4753277 .. 4758581
5305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00081770.1

Sequence Viewer

Length: 3621 bp
ATGGCTGCTCTACTCCTTTTGCATGTCTTGCTAATTACTGGCCGCTTGATGAACAATGTCGGCGGCGCCTCAAGTGACGCTCAAGATGTTTTCTTGCATAACATCAATATGAATGCAGTGGCGCTATTGTACTTGGCTTGTGGATCATGGGTCAGTTGTTTCCTAGAGGGGTATTGTTGGACAAGAACTGGTGAGAGACAAGCAGCTAGAATGAGAGTAACATATTTGAAAGCAGTTCTAAGGCAAGATGTGGGTTACTTTGATCTGCATGTCACAAGCACCTCCGAGGTCATCACCAGCATCTCTAGTGATAGCCTCGTGATTCAAGACGTCCTCAGTGAAAAGGTGCCAAACTTTATAATGAACTGCTCTTTGTTCTTTGGGAGCTATGTGGCGGCATTCATAATGCTGTGGAGGCTAGCCATCATTGCATTTCCGTTTGTGGTACTTCTGGTAATTCCGGGATTGATTTACGGAAGGATTTTGATGGGACTGGCTAGGCAGATTAGAGATGAATACAACAAGGCTGGAACAATAGCAGAACAGGCACTGTCATCAATCAGAACCGTTTACGCGTTTGTTGGGGAAACGAAAACAATTTCGGAGTTCTCTGCAGCTCTACAAGGCTCAGTGAAGTTGGGATTGAGTCAAGGCCTGGCAAAAGGCTTGGCCATTGGTAGCAACGGCATCGCTTTTGCTATTTGGTCTTTCATGTCCTACTATGGCAGCAGCATGGTCATGTATCATGGCGCACTTGGAGGCACTGTTGTATCAGCTGGTACTGGAATAATCCTTGGTGGATTGGCATTCGGAAGAGGGTTATCAAACCTGAAGTACTTCTCGGAAGCGTGCTCAGCATCAGAGCGAATAATGGAGGTGATACGGAGAGTCCCCAAGATCGACTCAGACAACATGGAAGGTGAAATGCTAGAGAACGTTTACGGAGAAGTCGAATTCAAGCACGTTGACTTCGCTTACCCTTCAAGGCCAGAAAGCATCATCTTCAACAACTTCAACTTGACGGTTCCTGCTGGGAAAACTGTGGCATTGGTGGGTGGTAGTGGCTCGGGAAAGTCGACAGTGATTTCTTTGTTGCAGAGATTTTATAATCCACTTGGAGGTGAGATACTCATTGATGGGGTGGCCATAAAAAATTGTCAGCTCAAGTGGCTTAGGTCCCAGATGGGGCTGGTGAGCCAAGAGCCTGCTCTTTTTGCAACCAGCATAAAAGAGAACATACTGTTTGGGAAAGAAGATGCTGACATTGAAGAGGTTATAGAGGCTGGTAAAGCTTCTAATGCTCACAATTTCATCTCTCAGTTGCCTCTGGGATATGACACACAGGTTGGTGAGAGAGGTATTCAGATTTCTGGAGGACAGAAGCAAAGAATAGCCATTGCACGAGCAATCATCAAGAAACCACGAATACTCCTTCTAGATGAAGCCACCACCGCGTTAGACTCCGAATCGGAGCGTGTAGTCCAAGAAGCTCTGGACAAAGCAGCGGTGGGACGTACGACCATCATCATCGCCCACCGCCTCTCCACCATCCGAAACGCTGACGTCATTGTTGTCGTTCAAAATGGGCAGGTCATGGAGAAAGGCTCACACGACGAGCTATTCCAACGTGAAAATGGCCTCTACACTTCTCTTGTCCGTTTACAACAAACAGATCAAGCACATTGTGCATCATCCTCTATTTCAAACATGGACATTCATGATACAAGCAGTCGTAGGCTTTCGATGGTTAGCCGTTCGAGTTCTGCCAACTCATTTGAGGGTCGAGCTTCGTCGGTTCATGGTGGGGAAGATGAGACCGTAGAAGTTAAGAAGCTGCCTGTCCCGTCTTTTCAAAGATTGATGGCTTTGAACCTTCCGGAGTGGAAACAAGCGCTTTTGGGGTGCTTCGGAGCGATATTGTTCGGTGCAGTTCAGCCGCTGTTTGCATTCACTCTGGGGTCGACGGTGTCAGTTTACTTCTTGGTGGAGCACGATGAGATCAAGGAGAAGACAAGAATCTATTCTCTGTGTTTTGTTGGGTTGGCTATTCTCTCTTTTCTAGTTAACCTTTGCCAGCATTACAACTTTGCCTACATGGGAGAGTACTTGACTAAGAGAATTAGAGAGAAGATGCTTTCAAAGATACTTACATTTGAAGCTGGGTGGTTTGATCAGGATGAGAATTCCAGTGGTGCCATATGCTCTAGACTCGCCAAAGATGCCAATGTGGTGAGGTCTTTAGTGGCTGATCGGCTTTCTCTACTTGTACAAACCTTCTCAGCTGTGACCGTAGCAGGCACAATGGGTTTGGTCATTGCATGGAGGCTGGCCTCAGTTATGATAGCACTGCAACCCATCACTATTCTCTGCTACTACACCAGGAGTATCCTTCTCCAAAGCATGTCAAGCAAAGCCACCAAAGCTCAAGATGAAAGTAGCAAGCTAGCTGCAGAGGCAGTCTCCAACCTCAGAACCATCACTGCTTTCTCGTCTCAAGACCGCCTGTTGAAAATGCTCGAAAAGGCCCAAGAAGGCCCGCGTAAGGAGAGCATTCGACAATCATGGTTTGCGGGTATTGCTCTCAGTTGTTCTCAAGGTCTTAACACTATCACCTGGGCTTTTGACTTTTGGTACGGAGGCAAGCTCGTCGCCAAGGGCTACATAACTGCGAAAGCACTGTTTCGTACGTACATGATATTGCTGAGCACGGGTCGGGTCATTGCGGAAGCCGGAAGTATGACTTCGGACCTTGTGAAAGGCTCGGACGCTGTTGCATCCGTATTTGCCGTGTTGGACCGGTACACAAATATAGAACCGGAAGACCTGGAAGGTTGCAAACCCAAAAGTATAACGGGTCATATAGAACTTCATGACATACATTTTGCATACCCCACTAGGCCCGATGTGATGATCTTGAAGGGATTCTCAATAAATATCGAAGCGAGAAAATCAACAGCTTTGGTGGGAAAAAGTGGGTCCGGAAAATCAACAATCATCGGATTAATTGAAAGATTTTACGATCCACTCAAAGGAGAAGTAAGAATCGACGGTCGAGATATAAAGTCGTACCATCTCAGGGTGTTAAGGAAACACATAGCCTTGGTTAGCCAAGAGCCAACATTATTTTCAGGCAACATAAGAGAAAACATCATATACGGCATGTCAGGTAAGATTGACGAATTGGAGATAATCGAAGCAGCTAAGGCAGCCAATGCTCATGATTTCATCTCGGGACTCAAGGAGGGATACAACACCTCATGTGGTAACAGAGGAGTACAACTGTCTGGGGGACAGAAGCAACGCATTGCTATAGCCAGAGCTATATTGAGGAACCCGGTGGTGTTACTATTAGATGAGGCGACCAGCTCTCTTGATAGTCAGTCAGAGAAGGTGGTGCAAGATGCGCTAGAGCGCGTGATGGTGGGGAGGACTAGTGTGGTGGTGGCACACAGGTTAAGTACCATACAACACTGTGATCTTATTACTGTCCTTGATAAAGGGAGGGTAGTCGAGAAAGGGAGTCACTCGTCTCTTTTGGCCAAAGGGCCTAAGGGTTCTTACTACTCATTGGTTAGCCTGCAGAGGACACCATTTGCATCAGAGCTTACCAAATTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1206

Amino Acids

131.84

Weight (kDa)

8.59

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 9 - 251 6.2e-42 ABC transporter transmembrane region
ABC_tran PF00005 336 - 483 2e-33 ABC transporter
ABC_membrane PF00664 632 - 902 1.5e-49 ABC transporter transmembrane region
ABC_tran PF00005 972 - 1122 2.1e-31 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 359, 1107
AatII GACGTC 2 cut(s) 333, 1566
Acc36I ACCTGC 1 cut(s) 1579
AccB1I GGYRCC 3 cut(s) 65, 346, 2192
AccI GTMKAC 2 cut(s) 1076, 1961
AccII CGCG 4 cut(s) 575, 1454, 2539, 3414
AccIII TCCGGA 2 cut(s) 1876, 2978
AclI AACGTT 1 cut(s) 936
AclWI GGATC 2 cut(s) 151, 3014
AcoI YGGCCR 4 cut(s) 40, 669, 1143, 3537
AcsI RAATTY 2 cut(s) 953, 2182
AcuI CTGAAG 1 cut(s) 851
AcyI GRCGYC 3 cut(s) 66, 330, 1563
AdeI CACNNNGTG 1 cut(s) 1685
AfeI AGCGCT 1 cut(s) 1893
AfiI CCNNNNNNNGG 5 cut(s) 1118, 1185, 2542, 3029, 3076
AflIII ACRYGT 1 cut(s) 573
AgeI ACCGGT 1 cut(s) 2796
AhlI ACTAGT 1 cut(s) 3431
AjnI CCWGG 4 cut(s) 654, 2378, 2612, 2823
AjuI GAANNNNNNNTTGG 2 cut(s) 3109, 3141
Alw21I GWGCWC 3 cut(s) 854, 1992, 2708
Alw26I GTCTC 5 cut(s) 190, 1808, 2464, 2496, 3534
AlwI GGATC 2 cut(s) 151, 3014
AlwNI CAGNNNCTG 2 cut(s) 550, 1939
Ama87I CYCGRG 2 cut(s) 1066, 3229
Aor13HI TCCGGA 2 cut(s) 1876, 2978
Aor51HI AGCGCT 1 cut(s) 1893
ApoI RAATTY 2 cut(s) 953, 2182
ArsI GACNNNNNNTTYG 2 cut(s) 2864, 2896
AseI ATTAAT 1 cut(s) 3002
AsiGI ACCGGT 1 cut(s) 2796
Asp700I GAANNNNTTC 3 cut(s) 836, 2020, 2921
AspLEI GCGC 6 cut(s) 68, 124, 752, 1894, 3406, 3414
AspS9I GGNCC 8 cut(s) 1176, 2524, 2534, 2746, 2794, 2898, 2976, 3545
AsuC2I CCSGG 2 cut(s) 462, 3335
AsuHPI GGTGA 9 cut(s) 203, 286, 889, 932, 1133, 1204, 1361, 2242, 2602
AsuNHI GCTAGC 2 cut(s) 418, 2443
AvaI CYCGRG 2 cut(s) 1066, 3229
AvaII GGWCC 4 cut(s) 1176, 2746, 2794, 2976
AxyI CCTNAGG 1 cut(s) 3549
BaeI ACNNNNGTAYC 2 cut(s) 753, 786
BalI TGGCCA 3 cut(s) 671, 1145, 3539
BanI GGYRCC 3 cut(s) 65, 346, 2192
BauI CACGAG 2 cut(s) 317, 1401
BbsI GAAGAC 2 cut(s) 2015, 2826
Bbv12I GWGCWC 3 cut(s) 854, 1992, 2708
BbvI GCAGC 9 cut(s) 215, 626, 738, 741, 1514, 1821, 2434, 3209, 3218
BceAI ACGGC 4 cut(s) 700, 1737, 2771, 3172
BcgI CGANNNNNNTGC 4 cut(s) 670, 704, 2629, 2663
BciT130I CCWGG 4 cut(s) 656, 2380, 2614, 2825
BciVI GTATCC 2 cut(s) 2396, 3239
BclI TGATCA 1 cut(s) 2170
BcnI CCSGG 2 cut(s) 462, 3335
BcoDI GTCTC 5 cut(s) 190, 1808, 2464, 2496, 3534
BcuI ACTAGT 1 cut(s) 3431
BfmI CTRYAG 4 cut(s) 612, 2448, 3309, 3578
BfoI RGCGCY 3 cut(s) 69, 125, 1895
BfuAI ACCTGC 1 cut(s) 1579
BfuI GTATCC 2 cut(s) 2396, 3239
BlpI GCTNAGC 2 cut(s) 853, 2702
BmcAI AGTACT 2 cut(s) 836, 2105
Bme1390I CCNGG 6 cut(s) 462, 656, 2380, 2614, 2825, 3335
Bme18I GGWCC 4 cut(s) 1176, 2746, 2794, 2976
BmeT110I CYCGRG 2 cut(s) 1066, 3229
BmgT120I GGNCC 8 cut(s) 1176, 2524, 2534, 2746, 2794, 2898, 2976, 3545
BmiI GGNNCC 7 cut(s) 67, 348, 1026, 1178, 2194, 2977, 3332
BmrFI CCNGG 6 cut(s) 462, 656, 2380, 2614, 2825, 3335
BmtI GCTAGC 2 cut(s) 422, 2447
BpiI GAAGAC 2 cut(s) 2015, 2826
BplI GAGNNNNNCTC 6 cut(s) 1589, 1621, 2444, 2476, 2628, 2660
BpmI CTGGAG 1 cut(s) 1392
Bpu10I CCTNAGC 2 cut(s) 1172, 3201
Bpu1102I GCTNAGC 2 cut(s) 853, 2702
BpuEI CTTGAG 7 cut(s) 55, 66, 1148, 2409, 2478, 2577, 3221
BpuMI CCSGG 2 cut(s) 462, 3335
BsaAI YACGTR 1 cut(s) 2688
BsaHI GRCGYC 3 cut(s) 66, 330, 1563
BsaI GGTCTC 1 cut(s) 1808
BsaJI CCNNGG 5 cut(s) 285, 793, 2613, 2652, 3099
BsaWI WCCGGW 4 cut(s) 1876, 2796, 2815, 2978
BsaXI ACNNNNNCTCC 8 cut(s) 750, 780, 1413, 1443, 1526, 1556, 3418, 3448
Bsc4I CCNNNNNNNGG 5 cut(s) 1118, 1185, 2542, 3029, 3076
Bse118I RCCGGY 1 cut(s) 2796
Bse1I ACTGG 5 cut(s) 43, 193, 498, 787, 2187
Bse21I CCTNAGG 1 cut(s) 3549
Bse3DI GCAATG 5 cut(s) 426, 1395, 2313, 2718, 3303
BseAI TCCGGA 2 cut(s) 1876, 2978
BseBI CCWGG 4 cut(s) 656, 2380, 2614, 2825
BseDI CCNNGG 5 cut(s) 285, 793, 2613, 2652, 3099
BseGI GGATG 4 cut(s) 1548, 1691, 2182, 2774
BseLI CCNNNNNNNGG 5 cut(s) 1118, 1185, 2542, 3029, 3076
BseMI GCAATG 5 cut(s) 426, 1395, 2313, 2718, 3303
BseNI ACTGG 5 cut(s) 43, 193, 498, 787, 2187
BseRI GAGGAG 1 cut(s) 3285
BseXI GCAGC 9 cut(s) 215, 626, 738, 741, 1514, 1821, 2434, 3209, 3218
BseYI CCCAGC 2 cut(s) 1031, 2159
BsgI GTGCAG 1 cut(s) 1947
Bsh1236I CGCG 4 cut(s) 575, 1454, 2539, 3414
Bsh1285I CGRYCG 1 cut(s) 3052
BshNI GGYRCC 3 cut(s) 65, 346, 2192
BshTI ACCGGT 1 cut(s) 2796
BsiEI CGRYCG 1 cut(s) 3052
BsiHKAI GWGCWC 3 cut(s) 854, 1992, 2708
BsiHKCI CYCGRG 2 cut(s) 1066, 3229
BsiSI CCGG 7 cut(s) 461, 1877, 2730, 2797, 2816, 2979, 3335
BsiWI CGTACG 2 cut(s) 1514, 2684
BslFI GGGAC 7 cut(s) 504, 875, 1162, 1524, 1826, 3246, 3303
BslI CCNNNNNNNGG 5 cut(s) 1118, 1185, 2542, 3029, 3076
BsmAI GTCTC 5 cut(s) 190, 1808, 2464, 2496, 3534
BsmBI CGTCTC 2 cut(s) 2496, 3534
BsmFI GGGAC 7 cut(s) 504, 875, 1162, 1524, 1826, 3246, 3303
BsmI GAATGC 5 cut(s) 118, 398, 806, 1946, 2550
Bso31I GGTCTC 1 cut(s) 1808
BsoBI CYCGRG 2 cut(s) 1066, 3229
Bsp1286I GDGCHC 3 cut(s) 854, 1992, 2708
Bsp13I TCCGGA 2 cut(s) 1876, 2978
Bsp1407I TGTACA 1 cut(s) 2266
Bsp1720I GCTNAGC 2 cut(s) 853, 2702
BspEI TCCGGA 2 cut(s) 1876, 2978
BspFNI CGCG 4 cut(s) 575, 1454, 2539, 3414
BspHI TCATGA 3 cut(s) 1717, 2869, 3217
BspLI GGNNCC 7 cut(s) 67, 348, 1026, 1178, 2194, 2977, 3332
BspMAI CTGCAG 3 cut(s) 616, 2452, 3582
BspMI ACCTGC 1 cut(s) 1579
BspOI GCTAGC 2 cut(s) 422, 2447
BspPI GGATC 2 cut(s) 151, 3014
BspT107I GGYRCC 3 cut(s) 65, 346, 2192
BspTNI GGTCTC 1 cut(s) 1808
BsrDI GCAATG 5 cut(s) 426, 1395, 2313, 2718, 3303
BsrFI RCCGGY 1 cut(s) 2796
BsrGI TGTACA 1 cut(s) 2266
BsrI ACTGG 5 cut(s) 43, 193, 498, 787, 2187
BssAI RCCGGY 1 cut(s) 2796
BssECI CCNNGG 5 cut(s) 285, 793, 2613, 2652, 3099
BssNI GRCGYC 3 cut(s) 66, 330, 1563
BssSI CACGAG 2 cut(s) 317, 1401
BssT1I CCWWGG 3 cut(s) 793, 2652, 3099
Bst2BI CACGAG 2 cut(s) 317, 1401
Bst2UI CCWGG 4 cut(s) 656, 2380, 2614, 2825
Bst6I CTCTTC 2 cut(s) 808, 1263
BstACI GRCGYC 3 cut(s) 66, 330, 1563
BstAPI GCANNNNNTGC 3 cut(s) 28, 1685, 3212
BstAUI TGTACA 1 cut(s) 2266
BstBAI YACGTR 1 cut(s) 2688
BstF5I GGATG 4 cut(s) 1548, 1691, 2182, 2774
BstFNI CGCG 4 cut(s) 575, 1454, 2539, 3414
BstH2I RGCGCY 3 cut(s) 69, 125, 1895
BstHHI GCGC 6 cut(s) 68, 124, 752, 1894, 3406, 3414
BstMAI GTCTC 5 cut(s) 190, 1808, 2464, 2496, 3534
BstMCI CGRYCG 1 cut(s) 3052
BstNI CCWGG 4 cut(s) 656, 2380, 2614, 2825
BstNSI RCATGY 4 cut(s) 26, 272, 2404, 3163
BstSCI CCNGG 6 cut(s) 460, 654, 2378, 2612, 2823, 3333
BstSFI CTRYAG 4 cut(s) 612, 2448, 3309, 3578
BstSNI TACGTA 1 cut(s) 2688
BstUI CGCG 4 cut(s) 575, 1454, 2539, 3414
BstV1I GCAGC 9 cut(s) 215, 626, 738, 741, 1514, 1821, 2434, 3209, 3218
BstV2I GAAGAC 2 cut(s) 2015, 2826
Bsu36I CCTNAGG 1 cut(s) 3549
BsuI GTATCC 2 cut(s) 2396, 3239
BtgZI GCGATG 2 cut(s) 673, 1513
BtsCI GGATG 4 cut(s) 1548, 1691, 2182, 2774
BtsI GCAGTG 3 cut(s) 123, 2345, 2478
BveI ACCTGC 1 cut(s) 1579
CaiI CAGNNNCTG 2 cut(s) 550, 1939
CciI TCATGA 3 cut(s) 1717, 2869, 3217
CfoI GCGC 6 cut(s) 68, 124, 752, 1894, 3406, 3414
Cfr10I RCCGGY 1 cut(s) 2796
Cfr13I GGNCC 8 cut(s) 1176, 2524, 2534, 2746, 2794, 2898, 2976, 3545
CseI GACGC 2 cut(s) 86, 2774
CspAI ACCGGT 1 cut(s) 2796
DinI GGCGCC 1 cut(s) 67
DraIII CACNNNGTG 1 cut(s) 1685
EaeI YGGCCR 4 cut(s) 40, 669, 1143, 3537
Eam1104I CTCTTC 2 cut(s) 808, 1263
EarI CTCTTC 2 cut(s) 808, 1263
Eco105I TACGTA 1 cut(s) 2688
Eco130I CCWWGG 3 cut(s) 793, 2652, 3099
Eco147I AGGCCT 1 cut(s) 654
Eco31I GGTCTC 1 cut(s) 1808
Eco47I GGWCC 4 cut(s) 1176, 2746, 2794, 2976
Eco47III AGCGCT 1 cut(s) 1893
Eco57I CTGAAG 1 cut(s) 851
Eco81I CCTNAGG 1 cut(s) 3549
Eco88I CYCGRG 2 cut(s) 1066, 3229
EcoO109I RGGNCCY 2 cut(s) 1176, 3545
EcoRI GAATTC 2 cut(s) 953, 2182
EcoRII CCWGG 4 cut(s) 654, 2378, 2612, 2823
EcoT14I CCWWGG 3 cut(s) 793, 2652, 3099
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
ErhI CCWWGG 3 cut(s) 793, 2652, 3099
Esp3I CGTCTC 2 cut(s) 2496, 3534
FalI AAGNNNNNCTT 2 cut(s) 2725, 2757
FaqI GGGAC 7 cut(s) 504, 875, 1162, 1524, 1826, 3246, 3303
FauI CCCGC 2 cut(s) 2544, 2563
FauNDI CATATG 1 cut(s) 2198
FbaI TGATCA 1 cut(s) 2170
FblI GTMKAC 2 cut(s) 1076, 1961
FokI GGATG 4 cut(s) 1535, 1678, 2189, 2761
GlaI GCGC 6 cut(s) 67, 123, 751, 1893, 3405, 3413
GsaI CCCAGC 2 cut(s) 1035, 2163
GsuI CTGGAG 1 cut(s) 1392
HaeII RGCGCY 3 cut(s) 69, 125, 1895
HapII CCGG 7 cut(s) 461, 1877, 2730, 2797, 2816, 2979, 3335
HgaI GACGC 2 cut(s) 86, 2774
HhaI GCGC 6 cut(s) 68, 124, 752, 1894, 3406, 3414
Hin1I GRCGYC 3 cut(s) 66, 330, 1563
Hin6I GCGC 6 cut(s) 66, 122, 750, 1892, 3404, 3412
HinP1I GCGC 6 cut(s) 66, 122, 750, 1892, 3404, 3412
HincII GTYRAC 4 cut(s) 967, 1077, 1962, 2065
HindII GTYRAC 4 cut(s) 967, 1077, 1962, 2065
HindIII AAGCTT 1 cut(s) 1290
HpaI GTTAAC 1 cut(s) 2065
HpaII CCGG 7 cut(s) 461, 1877, 2730, 2797, 2816, 2979, 3335
HphI GGTGA 9 cut(s) 203, 286, 889, 932, 1133, 1204, 1361, 2242, 2602
Hpy166II GTNNAC 9 cut(s) 571, 940, 967, 1077, 1661, 1962, 1975, 2065, 2802
Hpy8I GTNNAC 9 cut(s) 571, 940, 967, 1077, 1661, 1962, 1975, 2065, 2802
Hpy99I CGWCG 5 cut(s) 1616, 1795, 1966, 2651, 3050
HpyCH4IV ACGT 7 cut(s) 330, 936, 963, 1513, 1563, 1627, 2687
HpySE526I ACGT 7 cut(s) 330, 936, 963, 1513, 1563, 1627, 2687
Hsp92I GRCGYC 3 cut(s) 66, 330, 1563
HspAI GCGC 6 cut(s) 66, 122, 750, 1892, 3404, 3412
KasI GGCGCC 1 cut(s) 65
Kpn2I TCCGGA 2 cut(s) 1876, 2978
Ksp22I TGATCA 1 cut(s) 2170
KspAI GTTAAC 1 cut(s) 2065
LmnI GCTCC 4 cut(s) 384, 1471, 1910, 1987
Lsp1109I GCAGC 9 cut(s) 215, 626, 738, 741, 1514, 1821, 2434, 3209, 3218
MaeII ACGT 7 cut(s) 330, 936, 963, 1513, 1563, 1627, 2687
MaeIII GTNAC 8 cut(s) 74, 217, 254, 271, 2284, 3263, 3342, 3521
MboII GAAGA 8 cut(s) 825, 994, 1265, 1280, 1820, 2020, 2140, 2831
MhlI GDGCHC 3 cut(s) 854, 1992, 2708
MlsI TGGCCA 3 cut(s) 671, 1145, 3539
MluI ACGCGT 1 cut(s) 573
MluNI TGGCCA 3 cut(s) 671, 1145, 3539
Mly113I GGCGCC 1 cut(s) 66
MlyI GAGTC 7 cut(s) 655, 896, 897, 1454, 2202, 3228, 3529
MmeI TCCRAC 4 cut(s) 158, 1648, 2487, 2772
Mox20I TGGCCA 3 cut(s) 671, 1145, 3539
MroI TCCGGA 2 cut(s) 1876, 2978
MroXI GAANNNNTTC 3 cut(s) 836, 2020, 2921
MscI TGGCCA 3 cut(s) 671, 1145, 3539
MseI TTAA 6 cut(s) 1827, 2064, 2601, 3002, 3083, 3455
MslI CAYNNNNRTG 2 cut(s) 107, 737
Msp20I TGGCCA 3 cut(s) 671, 1145, 3539
MspA1I CMGCKG 4 cut(s) 776, 1505, 1939, 2282
MspI CCGG 7 cut(s) 461, 1877, 2730, 2797, 2816, 2979, 3335
MspR9I CCNGG 6 cut(s) 462, 656, 2380, 2614, 2825, 3335
Mva1269I GAATGC 5 cut(s) 118, 398, 806, 1946, 2550
MvaI CCWGG 4 cut(s) 656, 2380, 2614, 2825
MvnI CGCG 4 cut(s) 575, 1454, 2539, 3414
NarI GGCGCC 1 cut(s) 66
NciI CCSGG 2 cut(s) 462, 3335
NdeI CATATG 1 cut(s) 2198
NheI GCTAGC 2 cut(s) 418, 2443
NlaIV GGNNCC 7 cut(s) 67, 348, 1026, 1178, 2194, 2977, 3332
NmuCI GTSAC 4 cut(s) 74, 271, 2284, 3521
NspI RCATGY 4 cut(s) 26, 272, 2404, 3163
PagI TCATGA 3 cut(s) 1717, 2869, 3217
PceI AGGCCT 1 cut(s) 654
PcsI WCGNNNNNNNCGW 2 cut(s) 948, 1073
PctI GAATGC 5 cut(s) 118, 398, 806, 1946, 2550
PdmI GAANNNNTTC 3 cut(s) 836, 2020, 2921
PfeI GAWTC 5 cut(s) 322, 1466, 2016, 2922, 3042
Pfl23II CGTACG 2 cut(s) 1514, 2684
PflFI GACNNNGTC 1 cut(s) 1966
PfoI TCCNGGA 1 cut(s) 460
PinAI ACCGGT 1 cut(s) 2796
PleI GAGTC 7 cut(s) 654, 896, 896, 1454, 2202, 3228, 3528
PluTI GGCGCC 1 cut(s) 69
PpsI GAGTC 7 cut(s) 654, 896, 896, 1454, 2202, 3228, 3528
Ppu21I YACGTR 1 cut(s) 2688
PpuMI RGGWCCY 1 cut(s) 1176
PshBI ATTAAT 1 cut(s) 3002
PsiI TTATAA 2 cut(s) 359, 1107
Psp1406I AACGTT 1 cut(s) 936
Psp5II RGGWCCY 1 cut(s) 1176
Psp6I CCWGG 4 cut(s) 654, 2378, 2612, 2823
PspFI CCCAGC 2 cut(s) 1031, 2159
PspGI CCWGG 4 cut(s) 654, 2378, 2612, 2823
PspLI CGTACG 2 cut(s) 1514, 2684
PspN4I GGNNCC 7 cut(s) 67, 348, 1026, 1178, 2194, 2977, 3332
PspPI GGNCC 8 cut(s) 1176, 2524, 2534, 2746, 2794, 2898, 2976, 3545
PspPPI RGGWCCY 1 cut(s) 1176
PstI CTGCAG 3 cut(s) 616, 2452, 3582
PstNI CAGNNNCTG 2 cut(s) 550, 1939
PsyI GACNNNGTC 1 cut(s) 1966
PvuII CAGCTG 2 cut(s) 776, 2282
RseI CAYNNNNRTG 2 cut(s) 107, 737
SalI GTCGAC 2 cut(s) 1075, 1960
SaqAI TTAA 6 cut(s) 1827, 2064, 2601, 3002, 3083, 3455
Sau96I GGNCC 8 cut(s) 1176, 2524, 2534, 2746, 2794, 2898, 2976, 3545
ScaI AGTACT 2 cut(s) 836, 2105
SchI GAGTC 7 cut(s) 655, 896, 897, 1454, 2202, 3228, 3529
ScrFI CCNGG 6 cut(s) 462, 656, 2380, 2614, 2825, 3335
SduI GDGCHC 3 cut(s) 854, 1992, 2708
SfcI CTRYAG 4 cut(s) 612, 2448, 3309, 3578
SfoI GGCGCC 1 cut(s) 67
SinI GGWCC 4 cut(s) 1176, 2746, 2794, 2976
SmiMI CAYNNNNRTG 2 cut(s) 107, 737
SmlI CTYRAG 7 cut(s) 70, 81, 1163, 2424, 2493, 2592, 3236
SmoI CTYRAG 7 cut(s) 70, 81, 1163, 2424, 2493, 2592, 3236
SnaBI TACGTA 1 cut(s) 2688
SpeI ACTAGT 1 cut(s) 3431
SseBI AGGCCT 1 cut(s) 654
SspDI GGCGCC 1 cut(s) 65
StuI AGGCCT 1 cut(s) 654
StyD4I CCNGG 6 cut(s) 460, 654, 2378, 2612, 2823, 3333
StyI CCWWGG 3 cut(s) 793, 2652, 3099
TaiI ACGT 7 cut(s) 333, 939, 966, 1516, 1566, 1630, 2690
TatI WGTACW 5 cut(s) 129, 834, 2103, 2266, 3274
TauI GCSGC 4 cut(s) 45, 66, 398, 1939
TfiI GAWTC 5 cut(s) 322, 1466, 2016, 2922, 3042
Tru1I TTAA 6 cut(s) 1827, 2064, 2601, 3002, 3083, 3455
Tru9I TTAA 6 cut(s) 1827, 2064, 2601, 3002, 3083, 3455
TseFI GTSAC 4 cut(s) 74, 271, 2284, 3521
Tsp45I GTSAC 4 cut(s) 74, 271, 2284, 3521
TspGWI ACGGA 7 cut(s) 426, 489, 898, 957, 1646, 2649, 2767
Tth111I GACNNNGTC 1 cut(s) 1966
VpaK11BI GGWCC 4 cut(s) 1176, 2746, 2794, 2976
VspI ATTAAT 1 cut(s) 3002
XapI RAATTY 2 cut(s) 953, 2182
XbaI TCTAGA 2 cut(s) 1435, 2204
XceI RCATGY 4 cut(s) 26, 272, 2404, 3163
XcmI CCANNNNNNNNNTGG 1 cut(s) 1631
XmiI GTMKAC 2 cut(s) 1076, 1961
XmnI GAANNNNTTC 3 cut(s) 836, 2020, 2921
ZraI GACGTC 2 cut(s) 331, 1564
ZrmI AGTACT 2 cut(s) 836, 2105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.