Rorug02G0543900

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000317
Physical Location & Seq
Forward (+)
67262242 .. 67267766
5525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0543900.1

Sequence Viewer

Length: 2217 bp
ATGGGAACTGTTATGGAATTAGAAGCTCCCAAACCCAAAATCGAAGACGACGACGACGTCTCCCCCGTCGAGCAAGTCCGTCTGACGGTGACCAACGACGACGATCCGACCCTCCCCATCTGGACCTTCCGAATGTGGTTCCTAGGCCTCCTCTCCTGCGCCCTCCTCTCCTTTCTCAACCAGTTCTTCTCCTACAGAACCGAGCCACTCATCATCACCCAAATCACCGTACAAGTCGCTACGCTCCCCATAGGCCACTTCATGGCCAGAATCCTCCCCACCACCAAGTTCCGGATCCCCGGACTCAGCTCTGAGGTCTCCCTGAACCCTGGTCCGTTCAACATCAAAGAGCATGTGCTGATCACCATTTTCGCCAACGCCGGAAGTGCTTTCGGATCTGGCACGCCTTACGCTGTGGGGATTGTCAACATCATCAAGAAGTTTTATATCCGGAAGATCACTTTCCTCGCTAGCTGGCTGCTTATTATAACAACCCAGGTGTTGGGATATGGTTGGGCTGGACTCTTAAGAAAGTATGTTGTAGAGCCTGCTCATATGTGGTGGCCAAGCACACTCGTTCAGGTTTCACTTTTCCGGGCTTTGCATGAGAAAGAGGAGAAAGGTGACCAGCGCATTTCACGGGCAAAGTTCTTCCTAATTGCTCTAGTTTGCAGTTTTACATGGTATGCTTTCCCAGGGTATCTCTTCACTACCCTCACAAGCATATCATGGGTTTGTTGGATATTCTCCAAGTCGGTTACAGCCCAGCAGATTGGCTCAGGCATGAGAGGCCTTGGAGTTGGAGCAATTACGCTTGACTGGACTGCAGTGGCATCCTTCTTGTTCAGCCCCCTCATCTGCCCCTTCTTTGCCATTGCTAATGTTTTCGTTGGCTATGCATTGATAATCTACATTGTAATCCCTATAGCATACTGGGGATTGGACTCGTACGATGCACAGAAGTTTCCCATCTTTTCCTCGCACTTGTTTACTGCAGCAGGTCAACGGTACGACATTCCAGCTATTGTCAATGACAAGTTTCAGTTAGATATAGCAAAGTATGAGGAGCAGGGACGAATTCACTTAAGCACGTTTTTTGCTCTCACTTATGGCTTTGGTTTTGCCACAATCGCTTCCACCCTCACACATGTAGGGTTATTCTATGGAAGAGAGATCATGGATCGCTATCGTGCTTCTTACCAAGGAAAGGATGACATCCATACTAGATTGATGAGAAAATACAAGGACATACCTTCCTGGTGGTTTTACGTGTTGCTCTCCGTTACAATTGCAGTTTCCCTTGTACTTTGCATCTTCTTGAATGATCAGGTTCAGATGCCATGGTGGGGACTTCTATTTGCTAGTGCCTTAGCCTTTACATTCACCCTTCCTATCAGCATCATAACAGCAACAACAAACCAGACACCAGGACTAAACATAATAACAGAGTACATCATGGGACTCATATTACCAGGAAGACCAATAGCCAATGTATGCTTCAAAACTTACGGCTACATGAGCATGGCTCAAGCAGTCTCCTTCCTACAAGATTTCAAGCTTGGACATTACATGAAGATCCCTCCAAGATCAATGTTCTTAGTTCAGTTCATAGGAACAATTCTTGCGGGAACCGTAAACCTTGTGGTAGCAGAGTGGTTGCTGCACTCTATCAAGAACATATGCGTGGATGATCCTCATTCGGATAGTCCTTGGACGTGCCCAGGTGACCGAGTCTTCTTTGATGCGTCTGTGATATGGGGTTTGGCAGGACCACAACGTATATTTGGAAGCCTTGGAAACTATAGTGCCATGAACTGGTTCTTCCTCGGAGGTTTCATAGGACCAGTTATTGTTTGGCTACTACACAAGGCATTCCCAAAGCAAACTTGGATACGTCTCATAAATCTCCCAGTCCTTCTAGGAGCAACAGCTTATATGCCACCAGCTACAGCATTGAACTACAATTCCTGGATCGTAGTCGGAACCATCTTCAACTTTTTTGTCTTCCGTTACAGGAAGGAGTGGTGGCAGAGGTACAATTACGTTCTTTCAGCAGCATTAGATGCTGGGGTGGCTTTCATGGCAGTTTTAATATACCTTTCAGTAGGGGTTGAGAATACAAGTTTGACTTGGTGGGGAACAAACGGTGAACACTGTGACTTGGCAGCTTGTCCAACCGCCAAGGGCATAGTGGTCGACGGCTGTCCAGTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

738

Amino Acids

83.04

Weight (kDa)

8.46

Isoelectric Point (pI)

27.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 41 - 701 3.1e-184 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 488
AasI GACNNNNNNGTC 1 cut(s) 56
AatII GACGTC 1 cut(s) 60
Acc36I ACCTGC 1 cut(s) 989
AccB7I CCANNNNNTGG 3 cut(s) 262, 502, 1815
AccI GTMKAC 1 cut(s) 2196
AccIII TCCGGA 2 cut(s) 291, 450
AciI CCGC 2 cut(s) 1625, 2178
AclWI GGATC 8 cut(s) 98, 289, 302, 403, 1188, 1570, 1685, 1979
AcoI YGGCCR 2 cut(s) 264, 563
AcsI RAATTY 1 cut(s) 1077
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 6 cut(s) 231, 950, 1010, 1305, 1451, 2036
AfiI CCNNNNNNNGG 7 cut(s) 85, 262, 291, 502, 1207, 1346, 1815
AflII CTTAAG 2 cut(s) 526, 1084
AflIII ACRYGT 2 cut(s) 1147, 1269
AgsI TTSAA 6 cut(s) 340, 1321, 1501, 1555, 1957, 1993
AjiI CACGTC 1 cut(s) 1716
AjnI CCWGG 8 cut(s) 328, 495, 694, 1256, 1426, 1471, 1720, 1967
AjuI GAANNNNNNNTTGG 2 cut(s) 1481, 1513
AloI GAACNNNNNNTCC 2 cut(s) 1949, 1981
AluBI AGCT 8 cut(s) 26, 309, 474, 1022, 1558, 1931, 1946, 2168
AluI AGCT 8 cut(s) 26, 309, 474, 1022, 1558, 1931, 1946, 2168
Alw26I GTCTC 4 cut(s) 64, 322, 1540, 1901
AlwI GGATC 8 cut(s) 98, 289, 302, 403, 1188, 1570, 1685, 1979
Aor13HI TCCGGA 2 cut(s) 291, 450
AoxI GGCC 5 cut(s) 145, 253, 264, 563, 790
ApeKI GCWGC 5 cut(s) 478, 995, 1660, 2054, 2165
ApoI RAATTY 1 cut(s) 1077
Asp700I GAANNNNTTC 1 cut(s) 1817
AspA2I CCTAGG 1 cut(s) 142
AspLEI GCGC 2 cut(s) 161, 633
AspS9I GGNCC 4 cut(s) 123, 332, 1769, 1841
AsuC2I CCSGG 2 cut(s) 300, 596
AsuHPI GGTGA 8 cut(s) 100, 208, 217, 355, 635, 1375, 1736, 2159
AsuNHI GCTAGC 1 cut(s) 470
AvaII GGWCC 4 cut(s) 123, 332, 1769, 1841
AvrII CCTAGG 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 1721
BalI TGGCCA 2 cut(s) 266, 565
BamHI GGATCC 1 cut(s) 294
BbsI GAAGAC 4 cut(s) 51, 1483, 1726, 1996
BbvI GCAGC 5 cut(s) 465, 1007, 1647, 2066, 2177
BccI CCATC 3 cut(s) 125, 977, 1994
BceAI ACGGC 2 cut(s) 1525, 2215
BcgI CGANNNNNNTGC 2 cut(s) 2176, 2210
BciT130I CCWGG 8 cut(s) 330, 497, 696, 1258, 1428, 1473, 1722, 1969
BciVI GTATCC 1 cut(s) 1884
BclI TGATCA 2 cut(s) 360, 1324
BcnI CCSGG 2 cut(s) 300, 596
BcoDI GTCTC 4 cut(s) 64, 322, 1540, 1901
BfaI CTAG 6 cut(s) 143, 471, 665, 1224, 1362, 1919
BfmI CTRYAG 6 cut(s) 193, 825, 924, 993, 1801, 1947
BfrI CTTAAG 2 cut(s) 526, 1084
BfuAI ACCTGC 1 cut(s) 989
BfuI GTATCC 1 cut(s) 1884
BisI GCNGC 5 cut(s) 479, 996, 1661, 2055, 2166
BlnI CCTAGG 1 cut(s) 142
BlsI GCNGC 5 cut(s) 480, 997, 1662, 2056, 2167
Bme18I GGWCC 4 cut(s) 123, 332, 1769, 1841
BmgBI CACGTC 1 cut(s) 1716
BmgT120I GGNCC 4 cut(s) 123, 332, 1769, 1841
BmiI GGNNCC 4 cut(s) 140, 296, 1630, 1984
BmrI ACTGGG 2 cut(s) 943, 1904
BmsI GCATC 7 cut(s) 842, 943, 1320, 1326, 1407, 1732, 2053
BmtI GCTAGC 1 cut(s) 474
BmuI ACTGGG 2 cut(s) 943, 1904
BoxI GACNNNNGTC 1 cut(s) 2202
BpiI GAAGAC 4 cut(s) 51, 1483, 1726, 1996
BplI GAGNNNNNCTC 2 cut(s) 1510, 1542
Bpu10I CCTNAGC 2 cut(s) 778, 1369
BpuEI CTTGAG 1 cut(s) 1512
BpuMI CCSGG 2 cut(s) 300, 596
BsaAI YACGTR 1 cut(s) 1270
BsaBI GATNNNNATC 1 cut(s) 1185
BsaHI GRCGYC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 322
BsaWI WCCGGW 2 cut(s) 291, 450
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 7 cut(s) 85, 262, 291, 502, 1207, 1346, 1815
Bse1I ACTGG 7 cut(s) 181, 824, 938, 1820, 1844, 1910, 2207
Bse3DI GCAATG 1 cut(s) 873
Bse8I GATNNNNATC 1 cut(s) 1185
BseAI TCCGGA 2 cut(s) 291, 450
BseBI CCWGG 8 cut(s) 330, 497, 696, 1258, 1428, 1473, 1722, 1969
BseGI GGATG 4 cut(s) 833, 1215, 1216, 1693
BseJI GATNNNNATC 1 cut(s) 1185
BseLI CCNNNNNNNGG 7 cut(s) 85, 262, 291, 502, 1207, 1346, 1815
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 3 cut(s) 303, 319, 792
BseNI ACTGG 7 cut(s) 181, 824, 938, 1820, 1844, 1910, 2207
BseRI GAGGAG 4 cut(s) 140, 155, 629, 1079
BseSI GKGCMC 1 cut(s) 1721
BseXI GCAGC 5 cut(s) 465, 1007, 1647, 2066, 2177
BseYI CCCAGC 2 cut(s) 765, 2066
BsgI GTGCAG 1 cut(s) 1646
BshFI GGCC 5 cut(s) 147, 255, 266, 565, 792
BsiSI CCGG 5 cut(s) 292, 300, 381, 451, 595
BsiWI CGTACG 1 cut(s) 948
BslFI GGGAC 3 cut(s) 1086, 1362, 1473
BslI CCNNNNNNNGG 7 cut(s) 85, 262, 291, 502, 1207, 1346, 1815
BsmAI GTCTC 4 cut(s) 64, 322, 1540, 1901
BsmBI CGTCTC 2 cut(s) 64, 1901
BsmFI GGGAC 3 cut(s) 1086, 1362, 1473
BsmI GAATGC 1 cut(s) 1871
BsnI GGCC 5 cut(s) 147, 255, 266, 565, 792
Bso31I GGTCTC 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 1721
Bsp13I TCCGGA 2 cut(s) 291, 450
Bsp19I CCATGG 1 cut(s) 1340
BspACI CCGC 2 cut(s) 1625, 2178
BspANI GGCC 5 cut(s) 147, 255, 266, 565, 792
BspCNI CTCAG 3 cut(s) 304, 318, 791
BspEI TCCGGA 2 cut(s) 291, 450
BspLI GGNNCC 4 cut(s) 140, 296, 1630, 1984
BspMAI CTGCAG 2 cut(s) 829, 997
BspMI ACCTGC 1 cut(s) 989
BspOI GCTAGC 1 cut(s) 474
BspPI GGATC 8 cut(s) 98, 289, 302, 403, 1188, 1570, 1685, 1979
BspTI CTTAAG 2 cut(s) 526, 1084
BspTNI GGTCTC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 873
BsrI ACTGG 7 cut(s) 181, 824, 938, 1820, 1844, 1910, 2207
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 7 cut(s) 142, 793, 1201, 1340, 1709, 1792, 2181
Bst2UI CCWGG 8 cut(s) 330, 497, 696, 1258, 1428, 1473, 1722, 1969
Bst4CI ACNGT 7 cut(s) 10, 88, 229, 1008, 1633, 2147, 2156
Bst6I CTCTTC 2 cut(s) 710, 1162
BstACI GRCGYC 1 cut(s) 57
BstAFI CTTAAG 2 cut(s) 526, 1084
BstAPI GCANNNNNTGC 1 cut(s) 2063
BstBAI YACGTR 1 cut(s) 1270
BstC8I GCNNGC 4 cut(s) 404, 472, 476, 549
BstDEI CTNAG 5 cut(s) 305, 312, 778, 1369, 1597
BstDSI CCRYGG 1 cut(s) 1340
BstEII GGTNACC 3 cut(s) 88, 623, 1724
BstF5I GGATG 4 cut(s) 833, 1215, 1216, 1693
BstHHI GCGC 2 cut(s) 161, 633
BstMAI GTCTC 4 cut(s) 64, 322, 1540, 1901
BstMWI GCNNNNNNNGC 7 cut(s) 386, 789, 1130, 1518, 2063, 2072, 2081
BstNI CCWGG 8 cut(s) 330, 497, 696, 1258, 1428, 1473, 1722, 1969
BstNSI RCATGY 2 cut(s) 356, 1151
BstPAI GACNNNNGTC 1 cut(s) 2202
BstPI GGTNACC 3 cut(s) 88, 623, 1724
BstSFI CTRYAG 6 cut(s) 193, 825, 924, 993, 1801, 1947
BstSLI GKGCMC 1 cut(s) 1721
BstV1I GCAGC 5 cut(s) 465, 1007, 1647, 2066, 2177
BstV2I GAAGAC 4 cut(s) 51, 1483, 1726, 1996
BstX2I RGATCY 3 cut(s) 294, 395, 1575
BstXI CCANNNNNNTGG 1 cut(s) 773
BstYI RGATCY 3 cut(s) 294, 395, 1575
BsuI GTATCC 1 cut(s) 1884
BsuRI GGCC 5 cut(s) 147, 255, 266, 565, 792
BtgI CCRYGG 1 cut(s) 1340
BtrI CACGTC 1 cut(s) 1716
BtsCI GGATG 4 cut(s) 833, 1215, 1216, 1693
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 3 cut(s) 834, 2152, 2214
BveI ACCTGC 1 cut(s) 989
Cac8I GCNNGC 4 cut(s) 404, 472, 476, 549
CfoI GCGC 2 cut(s) 161, 633
Cfr13I GGNCC 4 cut(s) 123, 332, 1769, 1841
CseI GACGC 1 cut(s) 1734
Csp6I GTAC 6 cut(s) 230, 949, 1009, 1304, 1450, 2035
CviQI GTAC 6 cut(s) 230, 949, 1009, 1304, 1450, 2035
DdeI CTNAG 5 cut(s) 305, 312, 778, 1369, 1597
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 2 cut(s) 264, 563
Eam1104I CTCTTC 2 cut(s) 710, 1162
EarI CTCTTC 2 cut(s) 710, 1162
Eco130I CCWWGG 7 cut(s) 142, 793, 1201, 1340, 1709, 1792, 2181
Eco147I AGGCCT 2 cut(s) 147, 792
Eco31I GGTCTC 1 cut(s) 322
Eco47I GGWCC 4 cut(s) 123, 332, 1769, 1841
Eco91I GGTNACC 3 cut(s) 88, 623, 1724
EcoO65I GGTNACC 3 cut(s) 88, 623, 1724
EcoRI GAATTC 1 cut(s) 1077
EcoRII CCWGG 8 cut(s) 328, 495, 694, 1256, 1426, 1471, 1720, 1967
EcoT14I CCWWGG 7 cut(s) 142, 793, 1201, 1340, 1709, 1792, 2181
EcoT22I ATGCAT 1 cut(s) 901
ErhI CCWWGG 7 cut(s) 142, 793, 1201, 1340, 1709, 1792, 2181
Esp3I CGTCTC 2 cut(s) 64, 1901
FalI AAGNNNNNCTT 2 cut(s) 2113, 2145
FaqI GGGAC 3 cut(s) 1086, 1362, 1473
FauI CCCGC 1 cut(s) 1618
FauNDI CATATG 2 cut(s) 555, 1679
FbaI TGATCA 2 cut(s) 360, 1324
FblI GTMKAC 1 cut(s) 2196
Fnu4HI GCNGC 5 cut(s) 479, 996, 1661, 2055, 2166
FokI GGATG 4 cut(s) 820, 1202, 1223, 1700
Fsp4HI GCNGC 5 cut(s) 479, 996, 1661, 2055, 2166
FspBI CTAG 6 cut(s) 143, 471, 665, 1224, 1362, 1919
GlaI GCGC 2 cut(s) 160, 632
GluI GCNGC 5 cut(s) 479, 996, 1661, 2055, 2166
GsaI CCCAGC 2 cut(s) 769, 2070
HaeIII GGCC 5 cut(s) 147, 255, 266, 565, 792
HapII CCGG 5 cut(s) 292, 300, 381, 451, 595
HgaI GACGC 1 cut(s) 1734
HhaI GCGC 2 cut(s) 161, 633
Hin1I GRCGYC 1 cut(s) 57
Hin6I GCGC 2 cut(s) 159, 631
HinP1I GCGC 2 cut(s) 159, 631
HincII GTYRAC 3 cut(s) 427, 1004, 2197
HindII GTYRAC 3 cut(s) 427, 1004, 2197
HindIII AAGCTT 1 cut(s) 1556
HinfI GANTC 6 cut(s) 270, 303, 522, 944, 1461, 1731
HpaII CCGG 5 cut(s) 292, 300, 381, 451, 595
HphI GGTGA 8 cut(s) 100, 208, 217, 355, 635, 1375, 1736, 2159
Hpy166II GTNNAC 6 cut(s) 427, 990, 1004, 1636, 2150, 2197
Hpy188I TCNGA 9 cut(s) 84, 108, 131, 313, 395, 1335, 1702, 1829, 1982
Hpy188III TCNNGA 6 cut(s) 121, 292, 436, 451, 1318, 1672
Hpy8I GTNNAC 6 cut(s) 427, 990, 1004, 1636, 2150, 2197
Hpy99I CGWCG 7 cut(s) 53, 56, 59, 71, 101, 104, 2201
HpyAV CCTTC 8 cut(s) 136, 847, 874, 1263, 1397, 1549, 1925, 2011
HpyCH4III ACNGT 7 cut(s) 10, 88, 229, 1008, 1633, 2147, 2156
HpyCH4IV ACGT 7 cut(s) 57, 1091, 1269, 1715, 1777, 1894, 2043
HpyCH4V TGCA 9 cut(s) 604, 672, 827, 899, 956, 995, 1292, 1311, 1663
HpyF10VI GCNNNNNNNGC 7 cut(s) 386, 789, 1130, 1518, 2063, 2072, 2081
HpyF3I CTNAG 5 cut(s) 305, 312, 778, 1369, 1597
HpySE526I ACGT 7 cut(s) 57, 1091, 1269, 1715, 1777, 1894, 2043
Hsp92I GRCGYC 1 cut(s) 57
HspAI GCGC 2 cut(s) 159, 631
Kpn2I TCCGGA 2 cut(s) 291, 450
Ksp22I TGATCA 2 cut(s) 360, 1324
LmnI GCTCC 5 cut(s) 31, 249, 803, 1066, 1922
Lsp1109I GCAGC 5 cut(s) 465, 1007, 1647, 2066, 2177
LweI GCATC 7 cut(s) 842, 943, 1320, 1326, 1407, 1732, 2053
MaeI CTAG 6 cut(s) 143, 471, 665, 1224, 1362, 1919
MaeII ACGT 7 cut(s) 57, 1091, 1269, 1715, 1777, 1894, 2043
MaeIII GTNAC 7 cut(s) 88, 623, 757, 1282, 1724, 2009, 2156
MfeI CAATTG 1 cut(s) 1287
MflI RGATCY 3 cut(s) 294, 395, 1575
MhlI GDGCHC 1 cut(s) 1721
MlsI TGGCCA 2 cut(s) 266, 565
MluCI AATT 8 cut(s) 17, 657, 807, 1077, 1287, 1617, 1963, 2038
MluNI TGGCCA 2 cut(s) 266, 565
MlyI GAGTC 5 cut(s) 297, 516, 938, 1455, 1740
MmeI TCCRAC 5 cut(s) 131, 719, 781, 1960, 2198
Mox20I TGGCCA 2 cut(s) 266, 565
Mph1103I ATGCAT 1 cut(s) 901
MroI TCCGGA 2 cut(s) 291, 450
MroXI GAANNNNTTC 1 cut(s) 1817
MscI TGGCCA 2 cut(s) 266, 565
MseI TTAA 3 cut(s) 527, 1085, 2090
MslI CAYNNNNRTG 2 cut(s) 1520, 1682
Msp20I TGGCCA 2 cut(s) 266, 565
MspCI CTTAAG 2 cut(s) 526, 1084
MspI CCGG 5 cut(s) 292, 300, 381, 451, 595
MunI CAATTG 1 cut(s) 1287
Mva1269I GAATGC 1 cut(s) 1871
MvaI CCWGG 8 cut(s) 330, 497, 696, 1258, 1428, 1473, 1722, 1969
MwoI GCNNNNNNNGC 7 cut(s) 386, 789, 1130, 1518, 2063, 2072, 2081
NciI CCSGG 2 cut(s) 300, 596
NcoI CCATGG 1 cut(s) 1340
NdeI CATATG 2 cut(s) 555, 1679
NheI GCTAGC 1 cut(s) 470
NlaIV GGNNCC 4 cut(s) 140, 296, 1630, 1984
NmuCI GTSAC 4 cut(s) 88, 623, 1724, 2156
NsiI ATGCAT 1 cut(s) 901
NspI RCATGY 2 cut(s) 356, 1151
PasI CCCWGGG 1 cut(s) 695
PceI AGGCCT 2 cut(s) 147, 792
PciI ACATGT 1 cut(s) 1147
PcsI WCGNNNNNNNCGW 3 cut(s) 48, 54, 63
PctI GAATGC 1 cut(s) 1871
PdmI GAANNNNTTC 1 cut(s) 1817
PfeI GAWTC 1 cut(s) 270
Pfl23II CGTACG 1 cut(s) 948
PflFI GACNNNGTC 2 cut(s) 56, 1730
PflMI CCANNNNNTGG 3 cut(s) 262, 502, 1815
PfoI TCCNGGA 1 cut(s) 1967
PkrI GCNGC 5 cut(s) 480, 997, 1662, 2056, 2167
PleI GAGTC 5 cut(s) 297, 516, 938, 1455, 1739
PpsI GAGTC 5 cut(s) 297, 516, 938, 1455, 1739
Ppu21I YACGTR 1 cut(s) 1270
PscI ACATGT 1 cut(s) 1147
PshAI GACNNNNGTC 1 cut(s) 2202
PsiI TTATAA 1 cut(s) 488
Psp6I CCWGG 8 cut(s) 328, 495, 694, 1256, 1426, 1471, 1720, 1967
PspEI GGTNACC 3 cut(s) 88, 623, 1724
PspFI CCCAGC 2 cut(s) 765, 2066
PspGI CCWGG 8 cut(s) 328, 495, 694, 1256, 1426, 1471, 1720, 1967
PspLI CGTACG 1 cut(s) 948
PspN4I GGNNCC 4 cut(s) 140, 296, 1630, 1984
PspPI GGNCC 4 cut(s) 123, 332, 1769, 1841
PstI CTGCAG 2 cut(s) 829, 997
PsuI RGATCY 3 cut(s) 294, 395, 1575
PsyI GACNNNGTC 2 cut(s) 56, 1730
RsaI GTAC 6 cut(s) 231, 950, 1010, 1305, 1451, 2036
RsaNI GTAC 6 cut(s) 230, 949, 1009, 1304, 1450, 2035
RseI CAYNNNNRTG 2 cut(s) 1520, 1682
SalI GTCGAC 1 cut(s) 2195
SaqAI TTAA 3 cut(s) 527, 1085, 2090
SatI GCNGC 5 cut(s) 479, 996, 1661, 2055, 2166
Sau96I GGNCC 4 cut(s) 123, 332, 1769, 1841
SchI GAGTC 5 cut(s) 297, 516, 938, 1455, 1740
SduI GDGCHC 1 cut(s) 1721
SfaNI GCATC 7 cut(s) 842, 943, 1320, 1326, 1407, 1732, 2053
SfcI CTRYAG 6 cut(s) 193, 825, 924, 993, 1801, 1947
SinI GGWCC 4 cut(s) 123, 332, 1769, 1841
SmiMI CAYNNNNRTG 2 cut(s) 1520, 1682
SmlI CTYRAG 3 cut(s) 526, 1084, 1527
SmoI CTYRAG 3 cut(s) 526, 1084, 1527
Sse9I AATT 8 cut(s) 17, 657, 807, 1077, 1287, 1617, 1963, 2038
SseBI AGGCCT 2 cut(s) 147, 792
SsiI CCGC 2 cut(s) 1625, 2178
SspMI CTAG 6 cut(s) 143, 471, 665, 1224, 1362, 1919
StuI AGGCCT 2 cut(s) 147, 792
StyI CCWWGG 7 cut(s) 142, 793, 1201, 1340, 1709, 1792, 2181
TaaI ACNGT 7 cut(s) 10, 88, 229, 1008, 1633, 2147, 2156
TaiI ACGT 7 cut(s) 60, 1094, 1272, 1718, 1780, 1897, 2046
TaqI TCGA 3 cut(s) 42, 69, 2196
TaqII GACCGA 1 cut(s) 1743
TasI AATT 8 cut(s) 17, 657, 807, 1077, 1287, 1617, 1963, 2038
TatI WGTACW 2 cut(s) 1303, 1449
TfiI GAWTC 1 cut(s) 270
Tru1I TTAA 3 cut(s) 527, 1085, 2090
Tru9I TTAA 3 cut(s) 527, 1085, 2090
TscAI CASTG 3 cut(s) 834, 2159, 2214
TseFI GTSAC 4 cut(s) 88, 623, 1724, 2156
TseI GCWGC 5 cut(s) 478, 995, 1660, 2054, 2165
Tsp45I GTSAC 4 cut(s) 88, 623, 1724, 2156
TspDTI ATGAA 6 cut(s) 250, 1586, 1597, 1825, 1826, 2068
TspGWI ACGGA 4 cut(s) 68, 324, 1270, 1997
TspRI CASTG 3 cut(s) 834, 2159, 2214
Tth111I GACNNNGTC 2 cut(s) 56, 1730
Van91I CCANNNNNTGG 3 cut(s) 262, 502, 1815
Vha464I CTTAAG 2 cut(s) 526, 1084
VpaK11BI GGWCC 4 cut(s) 123, 332, 1769, 1841
XapI RAATTY 1 cut(s) 1077
XceI RCATGY 2 cut(s) 356, 1151
XcmI CCANNNNNNNNNTGG 3 cut(s) 1851, 1884, 2188
XmaJI CCTAGG 1 cut(s) 142
XmiI GTMKAC 1 cut(s) 2196
XmnI GAANNNNTTC 1 cut(s) 1817
XspI CTAG 6 cut(s) 143, 471, 665, 1224, 1362, 1919
ZraI GACGTC 1 cut(s) 58
Zsp2I ATGCAT 1 cut(s) 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.