Rmu_sc0001323.1_g000011

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001323.1
OG0000619
Physical Location & Seq
Forward (+)
36064 .. 38458
2395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001323.1_g000011.1.cds

Sequence Viewer

Length: 2133 bp
atggatgaggagaccggccaggggatcggtgaggccatggggagctatgtcagaacttggaaagataggaatggtagctgtttaggcaggttccttcgaattcgtgtggggattgatgtccagaagccattgagcaaaggggtgtccattccgggggcggcttggtccgggaagaaactttttgatcttgagtatgagagattaccccatttttgtttgttctgtggtctaatctctcacacaggcagtggttgtcctcttagagcgtcaggggagattcccgaacctacttatgatgtgctgttgaatgctgaaagaaaagaagcctggttggctaaacaggaggcacttagggaggcagaagaggttcgctccggcggcgggactcgatttgggctacattcggcgagaagaacagggtgggcgatgacagtaccggaatttccgaccattgggttgatcagatctcgagaggagcgggattcggagtttacccaacgggaatctccgtcggaggatgctatggaggttgaagatggtggggacgcggggagtttggtggagtcagctcctaagcggcggcgcttggaggagaggcgacggccggctttggctgtggaagaggttcaactgacggaggtacccattttggaatgcacggatttgtcggcggcgttgacttcgaagacctctgtcacgtcgtcaatctctgagtcaccattgaatgcgatccctgctttccgggggctgaaatcagctcctgcaatcttgggaggcattaatactaatcagagcgaagtgggggtcttctcttccggggaatcagctggagttaattacaagcgggttgggcccattgctggggtgataaattcaatggtaccggcccagaaaactaagttgaagaaatttcaagaggggactcagaagcgggccactctgagtcccgggttggcccggcctggtgtacggggtccgtccatgcatggggaggggtggtcttgtgagcatgggttgagttcaaaagaggtgggtgatacgtgcctgcatggggaggggttgtcttgtgcgaaagggttgggttcaaaaaaggttggtgagacgtgcatgcatggggaggggttgtcttgtgagtatgggaagagttccaaaggagtaggtggtacgtgcatgcatggggagggtttgtcatgtgtgcatggaaaaaattcaaagatggtgtgcatgcatggggaagggttgtcatgtgtgcatggaaaaaattcaaagaaggtgtgtgactcgtgcgtgcatggtgagcggttgtcaggtgtacatgggaagacttcaaagaaggggtttgttgttggtaagcaaaacagcttagtggcggctaaggttccaaaatcgagttctgggcgtgctcaaaagcgttctaccttgatgggtccgcttgggtggcctaatgtatttgcagttccttgtatctttaaacaaaagaagaatggcaagggtgttagtcgtagtggtggtttgtgtttactttggtcaggggatgtgaaggtttcgttgcgatcctattcaaataatcacattgatgtggtggtgggtaagccggatgatccggatagatggcgattcacaggtggagattttaatgaaattgttgcgaacaacgaaaaagaagggggtttgttgcgaagccaaattcaaatggatggctttcgggatttcatgcattctttcgatttacgccacataccgtggtcctgtccatgtttcacgtggagaggtgttagaggtggtgaggtggttaaagtaaggttggataggtttatctcatcccaaagttggttagataagtttctcttttctagggtagttaatttgaaccctaataggagtgaccatctcccaattctgctggacatcaaacaacgcagacaacgaaagaaaaaacgcaagaaaaaaaggttccgttttgaggaaatgtggcttagagacaaggagtgtttgaaggtggtagaagatgggtggaatcgtgggcatggtgacaatcctttctctagtgtttgtagtaagttggactgcactagacgtgctctgatggagtggagtgaggaaagatttggaggccttcagaaaaaagattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

710

Amino Acids

78.01

Weight (kDa)

9.31

Isoelectric Point (pI)

54.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 78
Acc65I GGTACC 2 cut(s) 640, 880
AccB1I GGYRCC 2 cut(s) 640, 880
AccBSI CCGCTC 2 cut(s) 478, 1300
AccII CGCG 1 cut(s) 548
AccIII TCCGGA 1 cut(s) 1603
AclWI GGATC 4 cut(s) 32, 724, 1548, 1595
AcoI YGGCCR 2 cut(s) 16, 602
AcsI RAATTY 7 cut(s) 99, 440, 871, 908, 1207, 1261, 1686
AcuI CTGAAG 1 cut(s) 2102
AcvI CACGTG 1 cut(s) 1764
AfaI GTAC 6 cut(s) 435, 642, 882, 969, 1165, 1314
AjiI CACGTC 3 cut(s) 699, 1104, 2078
AjnI CCWGG 3 cut(s) 18, 326, 961
AjuI GAANNNNNNNTTGG 2 cut(s) 1375, 1407
AluBI AGCT 6 cut(s) 45, 78, 569, 758, 827, 1362
AluI AGCT 6 cut(s) 45, 78, 569, 758, 827, 1362
Alw21I GWGCWC 2 cut(s) 1405, 2083
Alw26I GTCTC 3 cut(s) 5, 1094, 1974
AlwI GGATC 4 cut(s) 32, 724, 1548, 1595
AlwNI CAGNNNCTG 1 cut(s) 761
Ama87I CYCGRG 2 cut(s) 468, 947
Aor13HI TCCGGA 1 cut(s) 1603
ApaI GGGCCC 1 cut(s) 855
ApoI RAATTY 7 cut(s) 99, 440, 871, 908, 1207, 1261, 1686
ArsI GACNNNNNNTTYG 2 cut(s) 789, 821
AseI ATTAAT 1 cut(s) 780
Asp700I GAANNNNTTC 4 cut(s) 366, 624, 1207, 1261
Asp718I GGTACC 2 cut(s) 640, 880
AspLEI GCGC 1 cut(s) 585
AspS9I GGNCC 9 cut(s) 165, 851, 852, 886, 933, 955, 974, 1427, 1746
AsuC2I CCSGG 7 cut(s) 153, 169, 743, 817, 948, 949, 958
AsuHPI GGTGA 8 cut(s) 41, 708, 877, 1046, 1109, 1307, 1796, 2042
AsuII TTCGAA 2 cut(s) 97, 683
AvaI CYCGRG 2 cut(s) 468, 947
AvaII GGWCC 4 cut(s) 165, 974, 1427, 1746
BaeGI GKGCMC 1 cut(s) 855
BaeI ACNNNNGTAYC 2 cut(s) 624, 657
BanI GGYRCC 2 cut(s) 640, 880
BanII GRGCYC 1 cut(s) 855
BauI CACGAG 1 cut(s) 1282
BbrPI CACGTG 1 cut(s) 1764
BbsI GAAGAC 3 cut(s) 692, 799, 1328
Bbv12I GWGCWC 2 cut(s) 1405, 2083
BccI CCATC 8 cut(s) 530, 1210, 1417, 1605, 1691, 1896, 2003, 2080
BceAI ACGGC 1 cut(s) 617
BciT130I CCWGG 3 cut(s) 20, 328, 963
BclI TGATCA 1 cut(s) 459
BcnI CCSGG 7 cut(s) 153, 169, 743, 817, 948, 949, 958
BcoDI GTCTC 3 cut(s) 5, 1094, 1974
BfaI CTAG 3 cut(s) 1854, 2046, 2073
BfoI RGCGCY 1 cut(s) 586
BfuAI ACCTGC 1 cut(s) 78
BglI GCCNNNNNGGC 1 cut(s) 332
BglII AGATCT 1 cut(s) 464
BisI GCNGC 6 cut(s) 159, 379, 578, 581, 672, 1371
BlsI GCNGC 6 cut(s) 160, 380, 579, 582, 673, 1372
Bme18I GGWCC 4 cut(s) 165, 974, 1427, 1746
BmeT110I CYCGRG 2 cut(s) 468, 947
BmgBI CACGTC 3 cut(s) 699, 1104, 2078
BmgT120I GGNCC 9 cut(s) 165, 851, 852, 886, 933, 955, 974, 1427, 1746
BmiI GGNNCC 8 cut(s) 92, 642, 853, 882, 975, 1380, 1428, 1955
BmsI GCATC 1 cut(s) 508
BoxI GACNNNNGTC 1 cut(s) 692
BpiI GAAGAC 3 cut(s) 692, 799, 1328
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpmI CTGGAG 1 cut(s) 849
Bpu10I CCTNAGC 2 cut(s) 573, 1374
Bpu14I TTCGAA 2 cut(s) 97, 683
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 7 cut(s) 153, 169, 743, 817, 948, 949, 958
BsaAI YACGTR 3 cut(s) 1041, 1167, 1764
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 7 cut(s) 19, 36, 152, 742, 816, 947, 1742
BsaWI WCCGGW 2 cut(s) 436, 1603
BsaXI ACNNNNNCTCC 8 cut(s) 983, 1013, 1046, 1076, 1109, 1139, 1172, 1202
Bse118I RCCGGY 3 cut(s) 14, 604, 883
Bse3DI GCAATG 1 cut(s) 855
BseAI TCCGGA 1 cut(s) 1603
BseBI CCWGG 3 cut(s) 20, 328, 963
BseDI CCNNGG 7 cut(s) 19, 36, 152, 742, 816, 947, 1742
BseGI GGATG 6 cut(s) 10, 523, 1540, 1603, 1702, 1820
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 3 cut(s) 702, 932, 938
BseRI GAGGAG 3 cut(s) 23, 488, 605
BseSI GKGCMC 1 cut(s) 855
BseX3I CGGCCG 1 cut(s) 602
BseYI CCCAGC 1 cut(s) 860
BsgI GTGCAG 1 cut(s) 2053
Bsh1236I CGCG 1 cut(s) 548
Bsh1285I CGRYCG 1 cut(s) 605
BshNI GGYRCC 2 cut(s) 640, 880
BsiEI CGRYCG 1 cut(s) 605
BsiHKAI GWGCWC 2 cut(s) 1405, 2083
BsiHKCI CYCGRG 2 cut(s) 468, 947
BslFI GGGAC 4 cut(s) 397, 557, 930, 934
BsmAI GTCTC 3 cut(s) 5, 1094, 1974
BsmBI CGTCTC 1 cut(s) 1094
BsmFI GGGAC 4 cut(s) 397, 557, 930, 934
BsmI GAATGC 4 cut(s) 313, 659, 730, 1717
Bso31I GGTCTC 1 cut(s) 5
BsoBI CYCGRG 2 cut(s) 468, 947
Bsp119I TTCGAA 2 cut(s) 97, 683
Bsp120I GGGCCC 1 cut(s) 851
Bsp1286I GDGCHC 3 cut(s) 855, 1405, 2083
Bsp13I TCCGGA 1 cut(s) 1603
Bsp1407I TGTACA 1 cut(s) 1312
Bsp143I GATC 7 cut(s) 24, 184, 459, 464, 729, 1553, 1600
Bsp19I CCATGG 1 cut(s) 36
BspCNI CTCAG 3 cut(s) 703, 933, 937
BspEI TCCGGA 1 cut(s) 1603
BspFNI CGCG 1 cut(s) 548
BspLI GGNNCC 8 cut(s) 92, 642, 853, 882, 975, 1380, 1428, 1955
BspMI ACCTGC 1 cut(s) 78
BspPI GGATC 4 cut(s) 32, 724, 1548, 1595
BspT104I TTCGAA 2 cut(s) 97, 683
BspT107I GGYRCC 2 cut(s) 640, 880
BspTNI GGTCTC 1 cut(s) 5
BsrBI CCGCTC 2 cut(s) 478, 1300
BsrDI GCAATG 1 cut(s) 855
BsrFI RCCGGY 3 cut(s) 14, 604, 883
BsrGI TGTACA 1 cut(s) 1312
BssAI RCCGGY 3 cut(s) 14, 604, 883
BssECI CCNNGG 7 cut(s) 19, 36, 152, 742, 816, 947, 1742
BssMI GATC 7 cut(s) 24, 184, 459, 464, 729, 1553, 1600
BssSI CACGAG 1 cut(s) 1282
BssT1I CCWWGG 1 cut(s) 36
Bst2BI CACGAG 1 cut(s) 1282
Bst2UI CCWGG 3 cut(s) 20, 328, 963
Bst4CI ACNGT 2 cut(s) 433, 1743
Bst6I CTCTTC 4 cut(s) 357, 615, 817, 1136
BstAUI TGTACA 1 cut(s) 1312
BstBAI YACGTR 3 cut(s) 1041, 1167, 1764
BstBI TTCGAA 2 cut(s) 97, 683
BstC8I GCNNGC 8 cut(s) 606, 933, 1046, 1109, 1172, 1226, 1289, 1401
BstDSI CCRYGG 2 cut(s) 36, 1742
BstF5I GGATG 6 cut(s) 10, 523, 1540, 1603, 1702, 1820
BstFNI CGCG 1 cut(s) 548
BstH2I RGCGCY 1 cut(s) 586
BstHHI GCGC 1 cut(s) 585
BstKTI GATC 7 cut(s) 27, 187, 462, 467, 732, 1556, 1603
BstMAI GTCTC 3 cut(s) 5, 1094, 1974
BstMBI GATC 7 cut(s) 24, 184, 459, 464, 729, 1553, 1600
BstMCI CGRYCG 1 cut(s) 605
BstMWI GCNNNNNNNGC 7 cut(s) 84, 332, 378, 734, 850, 1297, 1438
BstNI CCWGG 3 cut(s) 20, 328, 963
BstNSI RCATGY 3 cut(s) 1111, 1174, 1228
BstPAI GACNNNNGTC 1 cut(s) 692
BstSLI GKGCMC 1 cut(s) 855
BstUI CGCG 1 cut(s) 548
BstV2I GAAGAC 3 cut(s) 692, 799, 1328
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
BstZI CGGCCG 1 cut(s) 602
BtgI CCRYGG 2 cut(s) 36, 1742
BtgZI GCGATG 1 cut(s) 440
BtrI CACGTC 3 cut(s) 699, 1104, 2078
BtsCI GGATG 6 cut(s) 10, 523, 1540, 1603, 1702, 1820
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 253
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 8 cut(s) 606, 933, 1046, 1109, 1172, 1226, 1289, 1401
CaiI CAGNNNCTG 1 cut(s) 761
CfoI GCGC 1 cut(s) 585
Cfr10I RCCGGY 3 cut(s) 14, 604, 883
Cfr13I GGNCC 9 cut(s) 165, 851, 852, 886, 933, 955, 974, 1427, 1746
Cfr9I CCCGGG 1 cut(s) 947
CseI GACGC 2 cut(s) 255, 554
Csp6I GTAC 6 cut(s) 434, 641, 881, 968, 1164, 1313
CspCI CAANNNNNGTGG 2 cut(s) 1011, 1046
CviQI GTAC 6 cut(s) 434, 641, 881, 968, 1164, 1313
DpnI GATC 7 cut(s) 26, 186, 461, 466, 731, 1555, 1602
DpnII GATC 7 cut(s) 24, 184, 459, 464, 729, 1553, 1600
DraI TTTAAA 1 cut(s) 1471
EaeI YGGCCR 2 cut(s) 16, 602
EagI CGGCCG 1 cut(s) 602
Eam1104I CTCTTC 4 cut(s) 357, 615, 817, 1136
EarI CTCTTC 4 cut(s) 357, 615, 817, 1136
EclXI CGGCCG 1 cut(s) 602
Eco130I CCWWGG 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 2115
Eco24I GRGCYC 1 cut(s) 855
Eco31I GGTCTC 1 cut(s) 5
Eco47I GGWCC 4 cut(s) 165, 974, 1427, 1746
Eco52I CGGCCG 1 cut(s) 602
Eco57I CTGAAG 1 cut(s) 2102
Eco72I CACGTG 1 cut(s) 1764
Eco88I CYCGRG 2 cut(s) 468, 947
EcoRI GAATTC 1 cut(s) 99
EcoRII CCWGG 3 cut(s) 18, 326, 961
EcoT14I CCWWGG 1 cut(s) 36
EcoT22I ATGCAT 5 cut(s) 987, 1113, 1176, 1230, 1719
EcoT38I GRGCYC 1 cut(s) 855
ErhI CCWWGG 1 cut(s) 36
Esp3I CGTCTC 1 cut(s) 1094
FalI AAGNNNNNCTT 2 cut(s) 1832, 1864
FaqI GGGAC 4 cut(s) 397, 557, 930, 934
FauI CCCGC 5 cut(s) 374, 471, 541, 837, 924
FbaI TGATCA 1 cut(s) 459
Fnu4HI GCNGC 6 cut(s) 159, 379, 578, 581, 672, 1371
FokI GGATG 6 cut(s) 17, 530, 1547, 1610, 1709, 1807
FriOI GRGCYC 1 cut(s) 855
Fsp4HI GCNGC 6 cut(s) 159, 379, 578, 581, 672, 1371
FspBI CTAG 3 cut(s) 1854, 2046, 2073
GlaI GCGC 1 cut(s) 584
GluI GCNGC 6 cut(s) 159, 379, 578, 581, 672, 1371
GsaI CCCAGC 1 cut(s) 864
GsuI CTGGAG 1 cut(s) 849
HaeII RGCGCY 1 cut(s) 586
HgaI GACGC 2 cut(s) 255, 554
HhaI GCGC 1 cut(s) 585
Hin6I GCGC 1 cut(s) 583
HinP1I GCGC 1 cut(s) 583
HincII GTYRAC 1 cut(s) 678
HindII GTYRAC 1 cut(s) 678
HphI GGTGA 8 cut(s) 41, 708, 877, 1046, 1109, 1307, 1796, 2042
Hpy166II GTNNAC 5 cut(s) 492, 678, 968, 1313, 1520
Hpy188III TCNNGA 8 cut(s) 121, 188, 281, 468, 470, 914, 1604, 1706
Hpy8I GTNNAC 5 cut(s) 492, 678, 968, 1313, 1520
Hpy99I CGWCG 3 cut(s) 514, 603, 703
HpyAV CCTTC 8 cut(s) 104, 1229, 1264, 1327, 1534, 1658, 1990, 2126
HpyCH4III ACNGT 2 cut(s) 433, 1743
HpyCH4IV ACGT 6 cut(s) 698, 1040, 1103, 1166, 1763, 2077
HpyF10VI GCNNNNNNNGC 7 cut(s) 84, 332, 378, 734, 850, 1297, 1438
HpySE526I ACGT 6 cut(s) 698, 1040, 1103, 1166, 1763, 2077
HspAI GCGC 1 cut(s) 583
Kpn2I TCCGGA 1 cut(s) 1603
KpnI GGTACC 2 cut(s) 644, 884
KroI GCCGGC 1 cut(s) 604
KroNI GCCGGC 1 cut(s) 606
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 7 cut(s) 24, 184, 459, 464, 729, 1553, 1600
LmnI GCTCC 5 cut(s) 42, 377, 475, 574, 763
LweI GCATC 1 cut(s) 508
MaeI CTAG 3 cut(s) 1854, 2046, 2073
MaeII ACGT 6 cut(s) 698, 1040, 1103, 1166, 1763, 2077
MaeIII GTNAC 5 cut(s) 694, 714, 1277, 1883, 2030
MalI GATC 7 cut(s) 26, 186, 461, 466, 731, 1555, 1602
MbiI CCGCTC 2 cut(s) 478, 1300
MboI GATC 7 cut(s) 24, 184, 459, 464, 729, 1553, 1600
MflI RGATCY 1 cut(s) 464
MhlI GDGCHC 3 cut(s) 855, 1405, 2083
MlyI GAGTC 6 cut(s) 379, 572, 722, 916, 952, 1274
MmeI TCCRAC 4 cut(s) 470, 492, 1785, 2043
Mph1103I ATGCAT 5 cut(s) 987, 1113, 1176, 1230, 1719
MroI TCCGGA 1 cut(s) 1603
MroNI GCCGGC 1 cut(s) 604
MroXI GAANNNNTTC 4 cut(s) 366, 624, 1207, 1261
MseI TTAA 6 cut(s) 780, 834, 1470, 1635, 1794, 1863
MslI CAYNNNNRTG 2 cut(s) 1575, 1577
MspA1I CMGCKG 1 cut(s) 827
Mva1269I GAATGC 4 cut(s) 313, 659, 730, 1717
MvaI CCWGG 3 cut(s) 20, 328, 963
MvnI CGCG 1 cut(s) 548
MwoI GCNNNNNNNGC 7 cut(s) 84, 332, 378, 734, 850, 1297, 1438
NaeI GCCGGC 1 cut(s) 606
NciI CCSGG 7 cut(s) 153, 169, 743, 817, 948, 949, 958
NcoI CCATGG 1 cut(s) 36
NdeII GATC 7 cut(s) 24, 184, 459, 464, 729, 1553, 1600
NgoMIV GCCGGC 1 cut(s) 604
NlaIV GGNNCC 8 cut(s) 92, 642, 853, 882, 975, 1380, 1428, 1955
NmuCI GTSAC 5 cut(s) 694, 714, 1277, 1883, 2030
NsiI ATGCAT 5 cut(s) 987, 1113, 1176, 1230, 1719
NspI RCATGY 3 cut(s) 1111, 1174, 1228
NspV TTCGAA 2 cut(s) 97, 683
PaeI GCATGC 3 cut(s) 1111, 1174, 1228
PaeR7I CTCGAG 1 cut(s) 468
PceI AGGCCT 1 cut(s) 2115
PcsI WCGNNNNNNNCGW 1 cut(s) 1924
PctI GAATGC 4 cut(s) 313, 659, 730, 1717
PdiI GCCGGC 1 cut(s) 606
PdmI GAANNNNTTC 4 cut(s) 366, 624, 1207, 1261
PfeI GAWTC 6 cut(s) 277, 482, 503, 821, 1617, 2017
PfoI TCCNGGA 1 cut(s) 167
PkrI GCNGC 6 cut(s) 160, 380, 579, 582, 673, 1372
PleI GAGTC 6 cut(s) 379, 571, 721, 916, 951, 1274
PmaCI CACGTG 1 cut(s) 1764
PmlI CACGTG 1 cut(s) 1764
PpsI GAGTC 6 cut(s) 379, 571, 721, 916, 951, 1274
Ppu21I YACGTR 3 cut(s) 1041, 1167, 1764
PshAI GACNNNNGTC 1 cut(s) 692
PshBI ATTAAT 1 cut(s) 780
Psp6I CCWGG 3 cut(s) 18, 326, 961
PspCI CACGTG 1 cut(s) 1764
PspFI CCCAGC 1 cut(s) 860
PspGI CCWGG 3 cut(s) 18, 326, 961
PspN4I GGNNCC 8 cut(s) 92, 642, 853, 882, 975, 1380, 1428, 1955
PspOMI GGGCCC 1 cut(s) 851
PspPI GGNCC 9 cut(s) 165, 851, 852, 886, 933, 955, 974, 1427, 1746
PsrI GAACNNNNNNTAC 2 cut(s) 1440, 1472
PstNI CAGNNNCTG 1 cut(s) 761
PsuI RGATCY 1 cut(s) 464
PvuII CAGCTG 1 cut(s) 827
RsaI GTAC 6 cut(s) 435, 642, 882, 969, 1165, 1314
RsaNI GTAC 6 cut(s) 434, 641, 881, 968, 1164, 1313
RseI CAYNNNNRTG 2 cut(s) 1575, 1577
SaqAI TTAA 6 cut(s) 780, 834, 1470, 1635, 1794, 1863
SatI GCNGC 6 cut(s) 159, 379, 578, 581, 672, 1371
Sau3AI GATC 7 cut(s) 24, 184, 459, 464, 729, 1553, 1600
Sau96I GGNCC 9 cut(s) 165, 851, 852, 886, 933, 955, 974, 1427, 1746
SchI GAGTC 6 cut(s) 379, 572, 722, 916, 952, 1274
SduI GDGCHC 3 cut(s) 855, 1405, 2083
SfaNI GCATC 1 cut(s) 508
Sfr274I CTCGAG 1 cut(s) 468
SfuI TTCGAA 2 cut(s) 97, 683
SinI GGWCC 4 cut(s) 165, 974, 1427, 1746
SlaI CTCGAG 1 cut(s) 468
SmaI CCCGGG 1 cut(s) 949
SmiMI CAYNNNNRTG 2 cut(s) 1575, 1577
SmlI CTYRAG 2 cut(s) 188, 468
SmoI CTYRAG 2 cut(s) 188, 468
SphI GCATGC 3 cut(s) 1111, 1174, 1228
SseBI AGGCCT 1 cut(s) 2115
SspMI CTAG 3 cut(s) 1854, 2046, 2073
StuI AGGCCT 1 cut(s) 2115
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 433, 1743
TaiI ACGT 6 cut(s) 701, 1043, 1106, 1169, 1766, 2080
TaqI TCGA 6 cut(s) 97, 388, 469, 683, 1388, 1725
TatI WGTACW 1 cut(s) 1312
TauI GCSGC 6 cut(s) 161, 381, 580, 583, 674, 1373
TfiI GAWTC 6 cut(s) 277, 482, 503, 821, 1617, 2017
Tru1I TTAA 6 cut(s) 780, 834, 1470, 1635, 1794, 1863
Tru9I TTAA 6 cut(s) 780, 834, 1470, 1635, 1794, 1863
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 5 cut(s) 694, 714, 1277, 1883, 2030
Tsp45I GTSAC 5 cut(s) 694, 714, 1277, 1883, 2030
TspDTI ATGAA 2 cut(s) 1653, 1702
TspGWI ACGGA 5 cut(s) 498, 650, 674, 966, 1946
TspMI CCCGGG 1 cut(s) 947
TspRI CASTG 1 cut(s) 253
VpaK11BI GGWCC 4 cut(s) 165, 974, 1427, 1746
VspI ATTAAT 1 cut(s) 780
XapI RAATTY 7 cut(s) 99, 440, 871, 908, 1207, 1261, 1686
XceI RCATGY 3 cut(s) 1111, 1174, 1228
XcmI CCANNNNNNNNNTGG 1 cut(s) 1761
XhoI CTCGAG 1 cut(s) 468
XmaI CCCGGG 1 cut(s) 947
XmnI GAANNNNTTC 4 cut(s) 366, 624, 1207, 1261
XspI CTAG 3 cut(s) 1854, 2046, 2073
Zsp2I ATGCAT 5 cut(s) 987, 1113, 1176, 1230, 1719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.