Rmu_sc0007069.1_g000025

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007069.1
OG0000619
Physical Location & Seq
Reverse (-)
115616 .. 116983
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007069.1_g000025.1.cds

Sequence Viewer

Length: 1218 bp
atgaatgtgttgagctggaacagccacgggatcgggaacccttggatagtgaatggacttaaagggctgattgctctaaattctctcgatgttatttttctttgcgaaactagatataaagttaacgagatgacaagtgtgaaggttcaaattggttttcagaacgcttttgcggtggcttgcaagactgtttggaaacccaatgggatgattttgagattaggagggttgtgcttgttttggaaggaagggttggaggtggcacttagtacttattatgataatcatattgatgtcttgatgggtaatgtcaatgatagcaatcgattgaggtttatgggtttgtatggttttccaaaagtggaacaaaggcatcttacttgggaactaattaccaagttagggcacaacaattgcagaccgtggttgcttgggggagacgttaatgagattcttcatggtagcgagaaggagggcggtccccctcgttgtctgaggcaaattgaggcttttgcaagatgtgtggatggttgtgggttagtggatattaactttgtcggcccgtccttcacttggagggctcgagtaactcatcttagtccagcaaaatctgaccatcttccactcctcattgaggatgatgagtgtgctagggttgttaaagaaggttggaattgggtggagaggtctaaccctttccaaactatttgcttaaagattgagagtacaagacgagcgctttggaactggagtgaggagaagtttggtaatattaaggtggagatagagaagactagggaaatgtcgtcagtcttctacgatagaaatttgtctgcaccaccggaagatgagagacttgggttggaagcaagattgaatgatttactattgcatgaacacaattattggaaacaacgttctagggttatgtggctgactgaggttgacctaaatactcggtatttccaccaaaaggccagtaacaggaaaagaagaaaggagatcaatgggttgttcaatagtagtggagtttggtgcacggaggagtctggcatcgaaaaaattgtactctactattttggtgagttgtttacaatgtcttgtcctagaaatatggaattgtttacaagtttgtttcctccagtagttacaaatgaaatgaactctcaactaattaaggagtttgaagaggatgaagttctaaaggctatgaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

405

Amino Acids

46.83

Weight (kDa)

6.58

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 173, 477
AclI AACGTT 1 cut(s) 916
AclWI GGATC 1 cut(s) 38
AcsI RAATTY 2 cut(s) 79, 826
AfaI GTAC 3 cut(s) 271, 727, 1068
AfeI AGCGCT 1 cut(s) 738
AfiI CCNNNNNNNGG 5 cut(s) 402, 573, 634, 973, 984
AgsI TTSAA 4 cut(s) 149, 877, 1018, 1187
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AloI GAACNNNNNNTCC 2 cut(s) 901, 933
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
Alw21I GWGCWC 1 cut(s) 1040
Alw26I GTCTC 2 cut(s) 432, 847
Alw44I GTGCAC 1 cut(s) 1036
AlwI GGATC 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 582
Aor51HI AGCGCT 1 cut(s) 738
AoxI GGCC 2 cut(s) 559, 975
ApaLI GTGCAC 1 cut(s) 1036
ApoI RAATTY 2 cut(s) 79, 826
ArsI GACNNNNNNTTYG 2 cut(s) 723, 755
AspLEI GCGC 1 cut(s) 739
AspS9I GGNCC 2 cut(s) 479, 560
AsuHPI GGTGA 1 cut(s) 1094
AvaI CYCGRG 1 cut(s) 582
AvaII GGWCC 1 cut(s) 479
BaeGI GKGCMC 2 cut(s) 408, 1040
BanII GRGCYC 1 cut(s) 583
BbsI GAAGAC 2 cut(s) 797, 805
Bbv12I GWGCWC 1 cut(s) 1040
BccI CCATC 3 cut(s) 295, 521, 624
BcoDI GTCTC 2 cut(s) 432, 847
BfaI CTAG 5 cut(s) 111, 651, 795, 921, 1107
BfoI RGCGCY 1 cut(s) 740
BmcAI AGTACT 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 479
BmeT110I CYCGRG 1 cut(s) 582
BmgT120I GGNCC 2 cut(s) 479, 560
BmiI GGNNCC 2 cut(s) 38, 481
BmsI GCATC 2 cut(s) 382, 1062
BpiI GAAGAC 2 cut(s) 797, 805
BpmI CTGGAG 2 cut(s) 769, 1125
Bsa29I ATCGAT 1 cut(s) 325
BsaBI GATNNNNATC 1 cut(s) 321
BsaJI CCNNGG 3 cut(s) 25, 41, 422
BsaWI WCCGGW 1 cut(s) 841
Bsc4I CCNNNNNNNGG 5 cut(s) 402, 573, 634, 973, 984
Bse1I ACTGG 3 cut(s) 752, 978, 1142
Bse8I GATNNNNATC 1 cut(s) 321
BseCI ATCGAT 1 cut(s) 325
BseDI CCNNGG 3 cut(s) 25, 41, 422
BseGI GGATG 4 cut(s) 213, 532, 643, 1198
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 5 cut(s) 402, 573, 634, 973, 984
BseMII CTCAG 2 cut(s) 485, 930
BseNI ACTGG 3 cut(s) 752, 978, 1142
BseRI GAGGAG 3 cut(s) 617, 770, 1058
BseSI GKGCMC 2 cut(s) 408, 1040
BsgI GTGCAG 1 cut(s) 819
BshFI GGCC 2 cut(s) 561, 977
BshVI ATCGAT 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 1040
BsiHKCI CYCGRG 1 cut(s) 582
BsiSI CCGG 1 cut(s) 842
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 5 cut(s) 402, 573, 634, 973, 984
BsmAI GTCTC 2 cut(s) 432, 847
BsmBI CGTCTC 1 cut(s) 432
BsmFI GGGAC 1 cut(s) 465
BsnI GGCC 2 cut(s) 561, 977
BsoBI CYCGRG 1 cut(s) 582
Bsp1286I GDGCHC 3 cut(s) 408, 583, 1040
Bsp143I GATC 2 cut(s) 30, 1002
BspACI CCGC 2 cut(s) 173, 477
BspANI GGCC 2 cut(s) 561, 977
BspCNI CTCAG 2 cut(s) 486, 931
BspDI ATCGAT 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 38, 481
BspPI GGATC 1 cut(s) 38
BsrI ACTGG 3 cut(s) 752, 978, 1142
BssECI CCNNGG 3 cut(s) 25, 41, 422
BssMI GATC 2 cut(s) 30, 1002
BssT1I CCWWGG 1 cut(s) 41
Bst4CI ACNGT 2 cut(s) 190, 423
Bst6I CTCTTC 1 cut(s) 1182
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 4 cut(s) 266, 494, 596, 939
BstDSI CCRYGG 2 cut(s) 25, 422
BstENI CCTNNNNNAGG 1 cut(s) 632
BstF5I GGATG 4 cut(s) 213, 532, 643, 1198
BstH2I RGCGCY 1 cut(s) 740
BstHHI GCGC 1 cut(s) 739
BstKTI GATC 2 cut(s) 33, 1005
BstMAI GTCTC 2 cut(s) 432, 847
BstMBI GATC 2 cut(s) 30, 1002
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstSLI GKGCMC 2 cut(s) 408, 1040
BstV2I GAAGAC 2 cut(s) 797, 805
Bsu15I ATCGAT 1 cut(s) 325
BsuRI GGCC 2 cut(s) 561, 977
BsuTUI ATCGAT 1 cut(s) 325
BtgI CCRYGG 2 cut(s) 25, 422
BtsCI GGATG 4 cut(s) 213, 532, 643, 1198
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 1 cut(s) 739
Cfr13I GGNCC 2 cut(s) 479, 560
ClaI ATCGAT 1 cut(s) 325
Csp6I GTAC 3 cut(s) 270, 726, 1067
CspCI CAANNNNNGTGG 4 cut(s) 504, 539, 1006, 1041
CviAII CATG 2 cut(s) 458, 893
CviQI GTAC 3 cut(s) 270, 726, 1067
DdeI CTNAG 4 cut(s) 266, 494, 596, 939
DpnI GATC 2 cut(s) 32, 1004
DpnII GATC 2 cut(s) 30, 1002
Eam1104I CTCTTC 1 cut(s) 1182
EarI CTCTTC 1 cut(s) 1182
Eco130I CCWWGG 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 479
Eco47III AGCGCT 1 cut(s) 738
Eco88I CYCGRG 1 cut(s) 582
EcoNI CCTNNNNNAGG 1 cut(s) 632
EcoT14I CCWWGG 1 cut(s) 41
EcoT38I GRGCYC 1 cut(s) 583
ErhI CCWWGG 1 cut(s) 41
Esp3I CGTCTC 1 cut(s) 432
FaeI CATG 2 cut(s) 461, 896
FaqI GGGAC 1 cut(s) 465
FatI CATG 2 cut(s) 457, 892
FokI GGATG 4 cut(s) 220, 539, 650, 1205
FriOI GRGCYC 1 cut(s) 583
FspBI CTAG 5 cut(s) 111, 651, 795, 921, 1107
GlaI GCGC 1 cut(s) 738
GsuI CTGGAG 2 cut(s) 769, 1125
HaeII RGCGCY 1 cut(s) 740
HaeIII GGCC 2 cut(s) 561, 977
HapII CCGG 1 cut(s) 842
HhaI GCGC 1 cut(s) 739
Hin1II CATG 2 cut(s) 461, 896
Hin6I GCGC 1 cut(s) 737
HinP1I GCGC 1 cut(s) 737
HincII GTYRAC 2 cut(s) 124, 946
HindII GTYRAC 2 cut(s) 124, 946
HinfI GANTC 2 cut(s) 451, 1046
HpaI GTTAAC 1 cut(s) 124
HpaII CCGG 1 cut(s) 842
HphI GGTGA 1 cut(s) 1094
Hpy166II GTNNAC 5 cut(s) 124, 946, 1038, 1092, 1125
Hpy188I TCNGA 3 cut(s) 162, 495, 613
Hpy188III TCNNGA 3 cut(s) 34, 86, 298
Hpy8I GTNNAC 5 cut(s) 124, 946, 1038, 1092, 1125
HpyAV CCTTC 6 cut(s) 136, 238, 242, 463, 577, 659
HpyCH4III ACNGT 2 cut(s) 190, 423
HpyCH4IV ACGT 2 cut(s) 441, 916
HpyCH4V TGCA 6 cut(s) 183, 417, 515, 836, 892, 1038
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 4 cut(s) 266, 494, 596, 939
HpySE526I ACGT 2 cut(s) 441, 916
Hsp92II CATG 2 cut(s) 461, 896
HspAI GCGC 1 cut(s) 737
KspAI GTTAAC 1 cut(s) 124
Kzo9I GATC 2 cut(s) 30, 1002
LpnPI CCDG 7 cut(s) 615, 733, 855, 970, 991, 1035, 1155
LweI GCATC 2 cut(s) 382, 1062
MaeI CTAG 5 cut(s) 111, 651, 795, 921, 1107
MaeII ACGT 2 cut(s) 441, 916
MaeIII GTNAC 3 cut(s) 586, 980, 1147
MalI GATC 2 cut(s) 32, 1004
MboI GATC 2 cut(s) 30, 1002
MboII GAAGA 7 cut(s) 446, 611, 802, 805, 857, 1005, 1199
MfeI CAATTG 1 cut(s) 412
MhlI GDGCHC 3 cut(s) 408, 583, 1040
MlyI GAGTC 1 cut(s) 1055
MmeI TCCRAC 3 cut(s) 234, 650, 843
MseI TTAA 8 cut(s) 60, 123, 444, 549, 660, 713, 774, 1176
MslI CAYNNNNRTG 1 cut(s) 291
MspI CCGG 1 cut(s) 842
MunI CAATTG 1 cut(s) 412
MwoI GCNNNNNNNGC 1 cut(s) 21
NdeII GATC 2 cut(s) 30, 1002
NlaIII CATG 2 cut(s) 461, 896
NlaIV GGNNCC 2 cut(s) 38, 481
PaeR7I CTCGAG 1 cut(s) 582
PfeI GAWTC 1 cut(s) 451
PleI GAGTC 1 cut(s) 1054
PpsI GAGTC 1 cut(s) 1054
Psp1406I AACGTT 1 cut(s) 916
PspN4I GGNNCC 2 cut(s) 38, 481
PspPI GGNCC 2 cut(s) 479, 560
PspXI VCTCGAGB 1 cut(s) 582
RsaI GTAC 3 cut(s) 271, 727, 1068
RsaNI GTAC 3 cut(s) 270, 726, 1067
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 8 cut(s) 60, 123, 444, 549, 660, 713, 774, 1176
Sau3AI GATC 2 cut(s) 30, 1002
Sau96I GGNCC 2 cut(s) 479, 560
ScaI AGTACT 1 cut(s) 271
SchI GAGTC 1 cut(s) 1055
SduI GDGCHC 3 cut(s) 408, 583, 1040
SfaNI GCATC 2 cut(s) 382, 1062
Sfr274I CTCGAG 1 cut(s) 582
SinI GGWCC 1 cut(s) 479
SlaI CTCGAG 1 cut(s) 582
SmiMI CAYNNNNRTG 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
SsiI CCGC 2 cut(s) 173, 477
SspI AATATT 1 cut(s) 772
SspMI CTAG 5 cut(s) 111, 651, 795, 921, 1107
StyI CCWWGG 1 cut(s) 41
TaaI ACNGT 2 cut(s) 190, 423
TaiI ACGT 2 cut(s) 444, 919
TaqI TCGA 4 cut(s) 87, 325, 583, 1056
TatI WGTACW 3 cut(s) 269, 725, 1066
TfiI GAWTC 1 cut(s) 451
Tru1I TTAA 8 cut(s) 60, 123, 444, 549, 660, 713, 774, 1176
Tru9I TTAA 8 cut(s) 60, 123, 444, 549, 660, 713, 774, 1176
TspDTI ATGAA 6 cut(s) 17, 446, 909, 1170, 1175, 1209
TspGWI ACGGA 1 cut(s) 1055
VneI GTGCAC 1 cut(s) 1036
VpaK11BI GGWCC 1 cut(s) 479
XagI CCTNNNNNAGG 1 cut(s) 632
XapI RAATTY 2 cut(s) 79, 826
XhoI CTCGAG 1 cut(s) 582
XspI CTAG 5 cut(s) 111, 651, 795, 921, 1107
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.