FvH4_4g12950

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000619
Physical Location & Seq
Reverse (-)
16623787 .. 16626163
2377 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12950.t1

Sequence Viewer

Length: 1941 bp
ATGGAGGAAGAGTTGGGTGGGTTGATTCAACGTTTGGTTCTGACGGAGGATGAAGCTCAAGAGATTATCCTCCCAAATGACCAAGATCAATGGAAGCCAAAGAAGTTCTTGATTATGGGTCGACTGCTCACGAATAAAAAGTATAATATGGAGGCGTTGATAGGTACTATGAAGTTGTTGTGGACTCCGAGGAAACAACTCAGAGAAAGAAGTCGAATCTCGAAGGTTGTACTGGAAGGCAGGCAGTTCTCATATGCAAGGATGAAAGAACTCGAGAATGAGATTTACTTGGGTTCAAGTCTAAAGGTAAGGGTTCTGATAGACACTGATAGTCCTTTAAGGAGGGTGGCACATGTCAGATTACCCGAGAAGAGTCGAGGTTCATGCTTCGAAATGGATTATCTCAAACTCCCAGTGTTCTGTTTCTATTGTGGTCTACTTCATCATGATTCCAACAATCGTGAGCTCCATAGAAGTGGGGCGAATAGAGAGAAATTTGACTTCTTATTGTGTGCTGAACGAAAAGATGAATGGTTAGCGGAGAAGGAGGCTCGGGAAAGAGCAGCTGCGATGGAGAATTTGATTCAGAATGGGCGTCGCTTTGCATTACTGGAGCAGAGCAAGGGAGGTTGGTCAATGCTGGCTCCTGATTTCCCCTTATCTGGTATGGAGATCAGGAGTAATGAGATGGAGGTTGACCGGCCGTCTGCGGAGGAGGACGGTGGTCGTCGAAATAAGAAACAACGGCTGGAAGTCAATGTGGATCTGAAGGCAAGTAGTCAAGACAAACCAGGATTGGTGGTTCGGATTGATTCCCACATTTTTGGGAGGGAGATAATCATCCCAAAATTTTGGGATGCTAGAGCAACAGATTTTAGCCAAGATAAGTCAAGTAAGACCGGGAGGGATGAGGACGCTGTTTTGGGAGGGAATCTTATTGTTCTGGATTGTAATCAAGAACGAGATGATGGTGGTACGTCATTAATTGAGGATGATGTTATGGGAGGGAATCTTAATGGGATTGATTGTATGGAAGGTCAAATTAATGGTGAAATAAAGATTAATGGGCAGCTAGAGTTGGACCTGAATTGGCCTAGTGAGGAGGGGATCCAGAACAATACTGAAACTGAGACTAGTGTTGTTGGGCCCATTTCTACAAGTGAGCTGACTAAAGTAGAGAGGGAGTCAGTTGAGGTCGAATTGGTTCCCTACCAAAAGAAGACGACCAAGAAGAAGAAGGAGAGTGTGAGAGGGTTTGCTGTTGGAGGTCGAAAGTGTCGGGGTCGAGGTAAGATGGTGGAGTTTCAGAGGGAAGATGATGCAAGCTTTGAATGTGCTCTTGAACGTTCTCCCGGGATCGAGAACCCCTGGACAGTTATGGGGCATAAAGGGATCATTTCCCTCACTATTCCCAAGTTAATTTTTCTTTCTGAAACACTTTGTACGGAGGAGGATGTGACGGGGTTGAAGCGACAAGTAGGGAGGCAGAATGCTTTGGCAGTTAGCTGTAGGTTTGTAGAAAAAAGAAAAGGGAAGGGAGTAAGTCGTGTTAGTGGTTTGTGCTTATTGTGGAATGAGGATGTGAAGGTCTCCTTACAGTCTTTCTCGGATCATCACATAGATGTGGTTGTCGGTGATGCCAATGATCCGAAACGTTTCAGGTTTACTGGGATTTATGGCTTTTCCAAGGTTGAGGATCGGATTCGAACGTGGAATTTGCTATGTCAATTAAGTTTGCATGGCAATATAGCATGGATGGCGGGTGGTGATTACAATGAACTTAACTCTAGAGAGGATAAGTTGGGAGGAGCTCTACGTAGTTTTGGCCAAATTAACGACATGCAGGATGCTTTGAACTTTTGTGAGCTTCGAGATTTAAAGTTCGTCGGTCTATGTTTTACTTGGAGTGGGGTACGGGGTGGTGAAGTAGTAAAGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

647

Amino Acids

73.22

Weight (kDa)

6.04

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 121, 436
AciI CCGC 3 cut(s) 539, 710, 1760
AclI AACGTT 3 cut(s) 31, 1345, 1654
AclWI GGATC 8 cut(s) 771, 1102, 1115, 1364, 1400, 1617, 1640, 1704
AcoI YGGCCR 2 cut(s) 701, 1825
AcsI RAATTY 4 cut(s) 494, 577, 848, 1714
AcuI CTGAAG 1 cut(s) 788
AcyI GRCGYC 1 cut(s) 595
AfaI GTAC 5 cut(s) 166, 231, 976, 1444, 1914
AfiI CCNNNNNNNGG 1 cut(s) 662
AflIII ACRYGT 1 cut(s) 352
AgsI TTSAA 6 cut(s) 29, 297, 1331, 1343, 1468, 1855
AhdI GACNNNNNGTC 1 cut(s) 703
AhlI ACTAGT 1 cut(s) 1133
AjnI CCWGG 2 cut(s) 790, 1367
AloI GAACNNNNNNTCC 2 cut(s) 786, 818
AluBI AGCT 9 cut(s) 56, 466, 566, 1072, 1165, 1326, 1506, 1811, 1867
AluI AGCT 9 cut(s) 56, 466, 566, 1072, 1165, 1326, 1506, 1811, 1867
Alw21I GWGCWC 3 cut(s) 468, 1339, 1813
Alw26I GTCTC 2 cut(s) 1124, 1594
AlwI GGATC 8 cut(s) 771, 1102, 1115, 1364, 1400, 1617, 1640, 1704
Ama87I CYCGRG 4 cut(s) 272, 365, 552, 1352
AoxI GGCC 4 cut(s) 701, 1091, 1145, 1825
ApaI GGGCCC 1 cut(s) 1149
ApeKI GCWGC 3 cut(s) 563, 566, 1069
ApoI RAATTY 4 cut(s) 494, 577, 848, 1714
AseI ATTAAT 3 cut(s) 983, 1044, 1062
Asp700I GAANNNNTTC 2 cut(s) 1203, 1655
AspS9I GGNCC 3 cut(s) 1081, 1145, 1146
AsuC2I CCSGG 3 cut(s) 901, 1353, 1354
AsuHPI GGTGA 4 cut(s) 1061, 1646, 1778, 1934
AsuII TTCGAA 2 cut(s) 390, 1705
AvaI CYCGRG 4 cut(s) 272, 365, 552, 1352
AvaII GGWCC 1 cut(s) 1081
BaeGI GKGCMC 1 cut(s) 1149
BalI TGGCCA 1 cut(s) 1827
BamHI GGATCC 1 cut(s) 1107
BanII GRGCYC 3 cut(s) 468, 1149, 1813
BbsI GAAGAC 1 cut(s) 1226
Bbv12I GWGCWC 3 cut(s) 468, 1339, 1813
BbvI GCAGC 3 cut(s) 553, 575, 1081
BccI CCATC 5 cut(s) 565, 682, 962, 1288, 1750
BceAI ACGGC 2 cut(s) 688, 761
BcgI CGANNNNNNTGC 2 cut(s) 366, 400
BciT130I CCWGG 2 cut(s) 792, 1369
BcnI CCSGG 3 cut(s) 901, 1353, 1354
BcoDI GTCTC 2 cut(s) 1124, 1594
BcuI ACTAGT 1 cut(s) 1133
BfaI CTAG 5 cut(s) 861, 1073, 1095, 1134, 1788
BfmI CTRYAG 1 cut(s) 1507
BisI GCNGC 3 cut(s) 564, 567, 1070
BlsI GCNGC 3 cut(s) 565, 568, 1071
Bme1390I CCNGG 5 cut(s) 792, 901, 1353, 1354, 1369
Bme18I GGWCC 1 cut(s) 1081
BmeRI GACNNNNNGTC 1 cut(s) 703
BmeT110I CYCGRG 4 cut(s) 272, 365, 552, 1352
BmgT120I GGNCC 3 cut(s) 1081, 1145, 1146
BmiI GGNNCC 4 cut(s) 645, 1109, 1147, 1206
BmrFI CCNGG 5 cut(s) 792, 901, 1353, 1354, 1369
BmrI ACTGGG 2 cut(s) 407, 1677
BmsI GCATC 4 cut(s) 847, 1309, 1627, 1837
BmuI ACTGGG 2 cut(s) 407, 1677
BoxI GACNNNNGTC 1 cut(s) 723
BpiI GAAGAC 1 cut(s) 1226
BpmI CTGGAG 1 cut(s) 632
Bpu14I TTCGAA 2 cut(s) 390, 1705
BpuEI CTTGAG 1 cut(s) 42
BpuMI CCSGG 3 cut(s) 901, 1353, 1354
BsaAI YACGTR 1 cut(s) 1817
BsaBI GATNNNNATC 2 cut(s) 839, 951
BsaHI GRCGYC 1 cut(s) 595
BsaI GGTCTC 1 cut(s) 1594
BsaJI CCNNGG 4 cut(s) 188, 1352, 1367, 1686
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 662
Bse118I RCCGGY 1 cut(s) 699
Bse1I ACTGG 4 cut(s) 237, 413, 615, 1672
Bse8I GATNNNNATC 2 cut(s) 839, 951
BseBI CCWGG 2 cut(s) 792, 1369
BseDI CCNNGG 4 cut(s) 188, 1352, 1367, 1686
BseJI GATNNNNATC 2 cut(s) 839, 951
BseLI CCNNNNNNNGG 1 cut(s) 662
BseMII CTCAG 2 cut(s) 214, 1119
BseNI ACTGG 4 cut(s) 237, 413, 615, 1672
BseRI GAGGAG 4 cut(s) 728, 1115, 1463, 1821
BseSI GKGCMC 1 cut(s) 1149
BseX3I CGGCCG 1 cut(s) 701
BseXI GCAGC 3 cut(s) 553, 575, 1081
Bsh1285I CGRYCG 1 cut(s) 704
BshFI GGCC 4 cut(s) 703, 1093, 1147, 1827
BsiEI CGRYCG 1 cut(s) 704
BsiHKAI GWGCWC 3 cut(s) 468, 1339, 1813
BsiHKCI CYCGRG 4 cut(s) 272, 365, 552, 1352
BsiSI CCGG 3 cut(s) 700, 900, 1353
BslI CCNNNNNNNGG 1 cut(s) 662
BsmAI GTCTC 2 cut(s) 1124, 1594
BsmI GAATGC 1 cut(s) 1495
BsnI GGCC 4 cut(s) 703, 1093, 1147, 1827
Bso31I GGTCTC 1 cut(s) 1594
BsoBI CYCGRG 4 cut(s) 272, 365, 552, 1352
Bsp119I TTCGAA 2 cut(s) 390, 1705
Bsp120I GGGCCC 1 cut(s) 1145
Bsp1286I GDGCHC 4 cut(s) 468, 1149, 1339, 1813
Bsp143I GATC 9 cut(s) 85, 672, 763, 1107, 1356, 1392, 1609, 1645, 1696
BspACI CCGC 3 cut(s) 539, 710, 1760
BspANI GGCC 4 cut(s) 703, 1093, 1147, 1827
BspCNI CTCAG 2 cut(s) 213, 1120
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 4 cut(s) 645, 1109, 1147, 1206
BspPI GGATC 8 cut(s) 771, 1102, 1115, 1364, 1400, 1617, 1640, 1704
BspT104I TTCGAA 2 cut(s) 390, 1705
BspTNI GGTCTC 1 cut(s) 1594
BsrFI RCCGGY 1 cut(s) 699
BsrI ACTGG 4 cut(s) 237, 413, 615, 1672
BssAI RCCGGY 1 cut(s) 699
BssECI CCNNGG 4 cut(s) 188, 1352, 1367, 1686
BssMI GATC 9 cut(s) 85, 672, 763, 1107, 1356, 1392, 1609, 1645, 1696
BssNI GRCGYC 1 cut(s) 595
BssT1I CCWWGG 1 cut(s) 1686
Bst2UI CCWGG 2 cut(s) 792, 1369
Bst4CI ACNGT 3 cut(s) 722, 1375, 1599
Bst6I CTCTTC 2 cut(s) 3, 365
BstACI GRCGYC 1 cut(s) 595
BstBAI YACGTR 1 cut(s) 1817
BstBI TTCGAA 2 cut(s) 390, 1705
BstC8I GCNNGC 3 cut(s) 242, 642, 1324
BstDEI CTNAG 2 cut(s) 200, 1128
BstKTI GATC 9 cut(s) 88, 675, 766, 1110, 1359, 1395, 1612, 1648, 1699
BstMAI GTCTC 2 cut(s) 1124, 1594
BstMBI GATC 9 cut(s) 85, 672, 763, 1107, 1356, 1392, 1609, 1645, 1696
BstMCI CGRYCG 1 cut(s) 704
BstMWI GCNNNNNNNGC 1 cut(s) 1757
BstNI CCWGG 2 cut(s) 792, 1369
BstNSI RCATGY 2 cut(s) 356, 1843
BstPAI GACNNNNGTC 1 cut(s) 723
BstSCI CCNGG 5 cut(s) 790, 899, 1351, 1352, 1367
BstSFI CTRYAG 1 cut(s) 1507
BstSLI GKGCMC 1 cut(s) 1149
BstSNI TACGTA 1 cut(s) 1817
BstV1I GCAGC 3 cut(s) 553, 575, 1081
BstV2I GAAGAC 1 cut(s) 1226
BstX2I RGATCY 2 cut(s) 763, 1107
BstXI CCANNNNNNTGG 3 cut(s) 476, 824, 852
BstYI RGATCY 2 cut(s) 763, 1107
BstZI CGGCCG 1 cut(s) 701
BsuRI GGCC 4 cut(s) 703, 1093, 1147, 1827
BtgZI GCGATG 1 cut(s) 584
BtsIMutI CAGTG 2 cut(s) 324, 420
Cac8I GCNNGC 3 cut(s) 242, 642, 1324
CciI TCATGA 1 cut(s) 445
Cfr10I RCCGGY 1 cut(s) 699
Cfr13I GGNCC 3 cut(s) 1081, 1145, 1146
Cfr9I CCCGGG 1 cut(s) 1352
CseI GACGC 2 cut(s) 584, 923
Csp6I GTAC 5 cut(s) 165, 230, 975, 1443, 1913
CviAII CATG 6 cut(s) 353, 384, 446, 1739, 1752, 1840
CviQI GTAC 5 cut(s) 165, 230, 975, 1443, 1913
DdeI CTNAG 2 cut(s) 200, 1128
DpnI GATC 9 cut(s) 87, 674, 765, 1109, 1358, 1394, 1611, 1647, 1698
DpnII GATC 9 cut(s) 85, 672, 763, 1107, 1356, 1392, 1609, 1645, 1696
DraI TTTAAA 1 cut(s) 1878
DriI GACNNNNNGTC 1 cut(s) 703
EaeI YGGCCR 2 cut(s) 701, 1825
EagI CGGCCG 1 cut(s) 701
Eam1104I CTCTTC 2 cut(s) 3, 365
Eam1105I GACNNNNNGTC 1 cut(s) 703
EarI CTCTTC 2 cut(s) 3, 365
Ecl136II GAGCTC 2 cut(s) 466, 1811
EclXI CGGCCG 1 cut(s) 701
Eco105I TACGTA 1 cut(s) 1817
Eco130I CCWWGG 1 cut(s) 1686
Eco24I GRGCYC 3 cut(s) 468, 1149, 1813
Eco31I GGTCTC 1 cut(s) 1594
Eco47I GGWCC 1 cut(s) 1081
Eco52I CGGCCG 1 cut(s) 701
Eco53kI GAGCTC 2 cut(s) 466, 1811
Eco57I CTGAAG 1 cut(s) 788
Eco88I CYCGRG 4 cut(s) 272, 365, 552, 1352
EcoICRI GAGCTC 2 cut(s) 466, 1811
EcoRII CCWGG 2 cut(s) 790, 1367
EcoT14I CCWWGG 1 cut(s) 1686
EcoT38I GRGCYC 3 cut(s) 468, 1149, 1813
ErhI CCWWGG 1 cut(s) 1686
FaeI CATG 6 cut(s) 356, 387, 449, 1742, 1755, 1843
FalI AAGNNNNNCTT 4 cut(s) 92, 124, 1577, 1609
FatI CATG 6 cut(s) 352, 383, 445, 1738, 1751, 1839
FauI CCCGC 1 cut(s) 1753
FauNDI CATATG 1 cut(s) 253
FblI GTMKAC 2 cut(s) 121, 436
Fnu4HI GCNGC 3 cut(s) 564, 567, 1070
FriOI GRGCYC 3 cut(s) 468, 1149, 1813
Fsp4HI GCNGC 3 cut(s) 564, 567, 1070
FspBI CTAG 5 cut(s) 861, 1073, 1095, 1134, 1788
GluI GCNGC 3 cut(s) 564, 567, 1070
GsuI CTGGAG 1 cut(s) 632
HaeIII GGCC 4 cut(s) 703, 1093, 1147, 1827
HapII CCGG 3 cut(s) 700, 900, 1353
HgaI GACGC 2 cut(s) 584, 923
Hin1I GRCGYC 1 cut(s) 595
Hin1II CATG 6 cut(s) 356, 387, 449, 1742, 1755, 1843
HincII GTYRAC 2 cut(s) 122, 697
HindII GTYRAC 2 cut(s) 122, 697
HindIII AAGCTT 1 cut(s) 1324
HpaII CCGG 3 cut(s) 700, 900, 1353
HphI GGTGA 4 cut(s) 1061, 1646, 1778, 1934
Hpy166II GTNNAC 5 cut(s) 122, 183, 437, 697, 1665
Hpy8I GTNNAC 5 cut(s) 122, 183, 437, 697, 1665
Hpy99I CGWCG 3 cut(s) 600, 732, 1889
HpyAV CCTTC 8 cut(s) 217, 230, 538, 763, 1028, 1231, 1528, 1579
HpyCH4III ACNGT 3 cut(s) 722, 1375, 1599
HpyCH4IV ACGT 6 cut(s) 31, 977, 1345, 1654, 1709, 1816
HpyCH4V TGCA 5 cut(s) 257, 605, 1322, 1738, 1843
HpyF10VI GCNNNNNNNGC 1 cut(s) 1757
HpyF3I CTNAG 2 cut(s) 200, 1128
HpySE526I ACGT 6 cut(s) 31, 977, 1345, 1654, 1709, 1816
Hsp92I GRCGYC 1 cut(s) 595
Hsp92II CATG 6 cut(s) 356, 387, 449, 1742, 1755, 1843
Kzo9I GATC 9 cut(s) 85, 672, 763, 1107, 1356, 1392, 1609, 1645, 1696
LmnI GCTCC 4 cut(s) 471, 613, 649, 1808
Lsp1109I GCAGC 3 cut(s) 553, 575, 1081
LweI GCATC 4 cut(s) 847, 1309, 1627, 1837
MaeI CTAG 5 cut(s) 861, 1073, 1095, 1134, 1788
MaeII ACGT 6 cut(s) 31, 977, 1345, 1654, 1709, 1816
MaeIII GTNAC 1 cut(s) 1456
MalI GATC 9 cut(s) 87, 674, 765, 1109, 1358, 1394, 1611, 1647, 1698
MboI GATC 9 cut(s) 85, 672, 763, 1107, 1356, 1392, 1609, 1645, 1696
MboII GAAGA 6 cut(s) 20, 382, 1231, 1243, 1246, 1325
MflI RGATCY 2 cut(s) 763, 1107
MhlI GDGCHC 4 cut(s) 468, 1149, 1339, 1813
MlsI TGGCCA 1 cut(s) 1827
MluNI TGGCCA 1 cut(s) 1827
MlyI GAGTC 3 cut(s) 178, 382, 1193
MmeI TCCRAC 3 cut(s) 477, 1059, 1243
Mox20I TGGCCA 1 cut(s) 1827
MroXI GAANNNNTTC 2 cut(s) 1203, 1655
MscI TGGCCA 1 cut(s) 1827
MslI CAYNNNNRTG 3 cut(s) 474, 1620, 1622
Msp20I TGGCCA 1 cut(s) 1827
MspA1I CMGCKG 1 cut(s) 566
MspI CCGG 3 cut(s) 700, 900, 1353
MspR9I CCNGG 5 cut(s) 792, 901, 1353, 1354, 1369
Mva1269I GAATGC 1 cut(s) 1495
MvaI CCWGG 2 cut(s) 792, 1369
MwoI GCNNNNNNNGC 1 cut(s) 1757
NciI CCSGG 3 cut(s) 901, 1353, 1354
NdeI CATATG 1 cut(s) 253
NdeII GATC 9 cut(s) 85, 672, 763, 1107, 1356, 1392, 1609, 1645, 1696
NlaIII CATG 6 cut(s) 356, 387, 449, 1742, 1755, 1843
NlaIV GGNNCC 4 cut(s) 645, 1109, 1147, 1206
NmuCI GTSAC 1 cut(s) 1456
NspI RCATGY 2 cut(s) 356, 1843
NspV TTCGAA 2 cut(s) 390, 1705
PaeR7I CTCGAG 1 cut(s) 272
PagI TCATGA 1 cut(s) 445
PciI ACATGT 1 cut(s) 352
PctI GAATGC 1 cut(s) 1495
PdmI GAANNNNTTC 2 cut(s) 1203, 1655
PfeI GAWTC 8 cut(s) 25, 216, 449, 583, 812, 931, 1009, 1702
PkrI GCNGC 3 cut(s) 565, 568, 1071
PleI GAGTC 3 cut(s) 178, 381, 1192
PpsI GAGTC 3 cut(s) 178, 381, 1192
Ppu21I YACGTR 1 cut(s) 1817
PscI ACATGT 1 cut(s) 352
PshAI GACNNNNGTC 1 cut(s) 723
PshBI ATTAAT 3 cut(s) 983, 1044, 1062
Psp124BI GAGCTC 2 cut(s) 468, 1813
Psp1406I AACGTT 3 cut(s) 31, 1345, 1654
Psp6I CCWGG 2 cut(s) 790, 1367
PspGI CCWGG 2 cut(s) 790, 1367
PspN4I GGNNCC 4 cut(s) 645, 1109, 1147, 1206
PspOMI GGGCCC 1 cut(s) 1145
PspPI GGNCC 3 cut(s) 1081, 1145, 1146
PsuI RGATCY 2 cut(s) 763, 1107
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 5 cut(s) 166, 231, 976, 1444, 1914
RsaNI GTAC 5 cut(s) 165, 230, 975, 1443, 1913
RseI CAYNNNNRTG 3 cut(s) 474, 1620, 1622
SacI GAGCTC 2 cut(s) 468, 1813
SalI GTCGAC 1 cut(s) 120
SatI GCNGC 3 cut(s) 564, 567, 1070
Sau3AI GATC 9 cut(s) 85, 672, 763, 1107, 1356, 1392, 1609, 1645, 1696
Sau96I GGNCC 3 cut(s) 1081, 1145, 1146
SchI GAGTC 3 cut(s) 178, 382, 1193
ScrFI CCNGG 5 cut(s) 792, 901, 1353, 1354, 1369
SduI GDGCHC 4 cut(s) 468, 1149, 1339, 1813
SfaNI GCATC 4 cut(s) 847, 1309, 1627, 1837
SfcI CTRYAG 1 cut(s) 1507
Sfr274I CTCGAG 1 cut(s) 272
SfuI TTCGAA 2 cut(s) 390, 1705
SinI GGWCC 1 cut(s) 1081
SlaI CTCGAG 1 cut(s) 272
SmaI CCCGGG 1 cut(s) 1354
SmiMI CAYNNNNRTG 3 cut(s) 474, 1620, 1622
SmlI CTYRAG 2 cut(s) 57, 272
SmoI CTYRAG 2 cut(s) 57, 272
SnaBI TACGTA 1 cut(s) 1817
SpeI ACTAGT 1 cut(s) 1133
SsiI CCGC 3 cut(s) 539, 710, 1760
SspMI CTAG 5 cut(s) 861, 1073, 1095, 1134, 1788
SstI GAGCTC 2 cut(s) 468, 1813
StyD4I CCNGG 5 cut(s) 790, 899, 1351, 1352, 1367
StyI CCWWGG 1 cut(s) 1686
TaaI ACNGT 3 cut(s) 722, 1375, 1599
TaiI ACGT 6 cut(s) 34, 980, 1348, 1657, 1712, 1819
TaqII GACCGA 1 cut(s) 1877
TatI WGTACW 1 cut(s) 229
TfiI GAWTC 8 cut(s) 25, 216, 449, 583, 812, 931, 1009, 1702
TscAI CASTG 2 cut(s) 331, 420
TseFI GTSAC 1 cut(s) 1456
TseI GCWGC 3 cut(s) 563, 566, 1069
Tsp45I GTSAC 1 cut(s) 1456
TspDTI ATGAA 7 cut(s) 66, 185, 278, 372, 431, 543, 1791
TspGWI ACGGA 2 cut(s) 59, 1460
TspMI CCCGGG 1 cut(s) 1352
TspRI CASTG 2 cut(s) 331, 420
VpaK11BI GGWCC 1 cut(s) 1081
VspI ATTAAT 3 cut(s) 983, 1044, 1062
XapI RAATTY 4 cut(s) 494, 577, 848, 1714
XbaI TCTAGA 1 cut(s) 1787
XceI RCATGY 2 cut(s) 356, 1843
XhoI CTCGAG 1 cut(s) 272
XmaI CCCGGG 1 cut(s) 1352
XmiI GTMKAC 2 cut(s) 121, 436
XmnI GAANNNNTTC 2 cut(s) 1203, 1655
XspI CTAG 5 cut(s) 861, 1073, 1095, 1134, 1788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.