Rmu_sc0006824.1_g000021

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006824.1
OG0000619
Physical Location & Seq
Reverse (-)
102837 .. 104079
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006824.1_g000021.1.cds

Sequence Viewer

Length: 753 bp
atgcgagaggcgggggagctaatcgagccggcctatgatgcgcttctcaatgcagagaagaaagaggagtggttactagaacatctttggttgatttcccaggtatatggtgctagtggtagtggctgtagattttgtctgtatcctcagaaaaagtctgggtgggttatgacagcttcggagcttccgacggtggggtttatcagatctagggaggagagagactctggattgagtgagcatgagatcggggccggcgatgctatgcacgttgatacagtgatctctcgggggataatggaggatcaacagtttgctaaacagaggagaacggaggcgcagggtggtcgggagattgttccggtggtggcgttaaagacagggagtgatttgaggatgtaccgactcgacccatcactagcaatgaatgtcttgagttggaactgccaagggcttgggaaccgttggacagttaaaaggcttaaaaggttgttttccctcattcatcccaatttagtcttcttgtctgaaccaaaatgtacaatggctgaaatggttgagataaaggtacaactcggggggcgtaatgtttttgctgttccttgtaaattcaagctgaagaggaacggtaagggagttagcagggctgggggtttgtgtttactttggaatggtgatactccgatttcgttaaggagctattctgataatcatgtggatgttactgtgggcaaaccttcggacccgaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

250

Amino Acids

27.92

Weight (kDa)

8.87

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 11
AclWI GGATC 1 cut(s) 312
AcsI RAATTY 1 cut(s) 608
AcuI CTGAAG 1 cut(s) 638
AfaI GTAC 3 cut(s) 401, 541, 570
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 613
AjnI CCWGG 1 cut(s) 99
AjuI GAANNNNNNNTTGG 2 cut(s) 503, 535
AluBI AGCT 5 cut(s) 19, 176, 184, 616, 699
AluI AGCT 5 cut(s) 19, 176, 184, 616, 699
Alw26I GTCTC 1 cut(s) 216
AlwI GGATC 1 cut(s) 312
Ama87I CYCGRG 2 cut(s) 288, 575
AoxI GGCC 2 cut(s) 30, 252
ApoI RAATTY 1 cut(s) 608
AspLEI GCGC 2 cut(s) 43, 340
AspS9I GGNCC 2 cut(s) 252, 742
AsuHPI GGTGA 1 cut(s) 686
AvaI CYCGRG 2 cut(s) 288, 575
AvaII GGWCC 1 cut(s) 742
BbsI GAAGAC 1 cut(s) 511
BccI CCATC 1 cut(s) 421
BcgI CGANNNNNNTGC 2 cut(s) 329, 363
BciT130I CCWGG 1 cut(s) 101
BciVI GTATCC 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 216
BfaI CTAG 4 cut(s) 77, 114, 210, 419
BfmI CTRYAG 1 cut(s) 127
BfuI GTATCC 1 cut(s) 153
BglII AGATCT 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 742
BmeT110I CYCGRG 2 cut(s) 288, 575
BmgT120I GGNCC 2 cut(s) 252, 742
BmiI GGNNCC 3 cut(s) 253, 461, 744
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 2 cut(s) 28, 250
BpiI GAAGAC 1 cut(s) 511
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpuEI CTTGAG 1 cut(s) 454
BsaJI CCNNGG 2 cut(s) 99, 448
BsaWI WCCGGW 1 cut(s) 361
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse118I RCCGGY 2 cut(s) 28, 254
Bse3DI GCAATG 1 cut(s) 429
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 99, 448
BseGI GGATG 3 cut(s) 402, 505, 724
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 1 cut(s) 161
BseRI GAGGAG 3 cut(s) 80, 230, 340
BseYI CCCAGC 1 cut(s) 647
BshFI GGCC 2 cut(s) 32, 254
BsiHKCI CYCGRG 2 cut(s) 288, 575
BsiSI CCGG 3 cut(s) 29, 255, 362
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 216
BsnI GGCC 2 cut(s) 32, 254
BsoBI CYCGRG 2 cut(s) 288, 575
Bsp1407I TGTACA 1 cut(s) 539
Bsp143I GATC 4 cut(s) 206, 246, 282, 304
BspACI CCGC 1 cut(s) 11
BspANI GGCC 2 cut(s) 32, 254
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 3 cut(s) 253, 461, 744
BspPI GGATC 1 cut(s) 312
BsrDI GCAATG 1 cut(s) 429
BsrFI RCCGGY 2 cut(s) 28, 254
BsrGI TGTACA 1 cut(s) 539
BssAI RCCGGY 2 cut(s) 28, 254
BssECI CCNNGG 2 cut(s) 99, 448
BssMI GATC 4 cut(s) 206, 246, 282, 304
BssT1I CCWWGG 1 cut(s) 448
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 7 cut(s) 193, 280, 312, 464, 472, 629, 727
Bst6I CTCTTC 1 cut(s) 614
BstAUI TGTACA 1 cut(s) 539
BstC8I GCNNGC 2 cut(s) 30, 256
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 3 cut(s) 402, 505, 724
BstHHI GCGC 2 cut(s) 43, 340
BstKTI GATC 4 cut(s) 209, 249, 285, 307
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 4 cut(s) 206, 246, 282, 304
BstMWI GCNNNNNNNGC 3 cut(s) 25, 38, 260
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 511
BstX2I RGATCY 1 cut(s) 206
BstXI CCANNNNNNTGG 2 cut(s) 107, 455
BstYI RGATCY 1 cut(s) 206
BsuI GTATCC 1 cut(s) 153
BsuRI GGCC 2 cut(s) 32, 254
BtgZI GCGATG 1 cut(s) 273
BtsCI GGATG 3 cut(s) 402, 505, 724
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 30, 256
CfoI GCGC 2 cut(s) 43, 340
Cfr10I RCCGGY 2 cut(s) 28, 254
Cfr13I GGNCC 2 cut(s) 252, 742
Csp6I GTAC 3 cut(s) 400, 540, 569
CviAII CATG 2 cut(s) 242, 713
CviQI GTAC 3 cut(s) 400, 540, 569
DdeI CTNAG 1 cut(s) 147
DpnI GATC 4 cut(s) 208, 248, 284, 306
DpnII GATC 4 cut(s) 206, 246, 282, 304
Eam1104I CTCTTC 1 cut(s) 614
EarI CTCTTC 1 cut(s) 614
Eco130I CCWWGG 1 cut(s) 448
Eco47I GGWCC 1 cut(s) 742
Eco57I CTGAAG 1 cut(s) 638
Eco88I CYCGRG 2 cut(s) 288, 575
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 448
FaeI CATG 2 cut(s) 245, 716
FaiI YATR 7 cut(s) 36, 106, 108, 170, 243, 266, 714
FatI CATG 2 cut(s) 241, 712
FauI CCCGC 1 cut(s) 4
FokI GGATG 3 cut(s) 409, 492, 731
FspBI CTAG 4 cut(s) 77, 114, 210, 419
GlaI GCGC 2 cut(s) 42, 339
GsaI CCCAGC 1 cut(s) 651
HaeIII GGCC 2 cut(s) 32, 254
HapII CCGG 3 cut(s) 29, 255, 362
HhaI GCGC 2 cut(s) 43, 340
Hin1II CATG 2 cut(s) 245, 716
Hin6I GCGC 2 cut(s) 41, 338
HinP1I GCGC 2 cut(s) 41, 338
HinfI GANTC 2 cut(s) 224, 405
HpaII CCGG 3 cut(s) 29, 255, 362
HphI GGTGA 1 cut(s) 686
Hpy166II GTNNAC 1 cut(s) 662
Hpy188I TCNGA 8 cut(s) 150, 181, 189, 206, 529, 684, 706, 742
Hpy188III TCNNGA 3 cut(s) 228, 350, 433
Hpy8I GTNNAC 1 cut(s) 662
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 747
HpyCH4III ACNGT 7 cut(s) 193, 280, 312, 464, 472, 629, 727
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 2 cut(s) 53, 268
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 38, 260
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 2 cut(s) 245, 716
HspAI GCGC 2 cut(s) 41, 338
KroI GCCGGC 2 cut(s) 28, 254
KroNI GCCGGC 2 cut(s) 30, 256
Kzo9I GATC 4 cut(s) 206, 246, 282, 304
LmnI GCTCC 3 cut(s) 16, 181, 696
LweI GCATC 2 cut(s) 28, 250
MaeI CTAG 4 cut(s) 77, 114, 210, 419
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 72, 721
MalI GATC 4 cut(s) 208, 248, 284, 306
MboI GATC 4 cut(s) 206, 246, 282, 304
MboII GAAGA 3 cut(s) 70, 511, 631
MflI RGATCY 1 cut(s) 206
MluCI AATT 2 cut(s) 511, 608
MlyI GAGTC 2 cut(s) 218, 399
MmeI TCCRAC 3 cut(s) 212, 419, 446
MnlI CCTC 9 cut(s) 58, 156, 208, 295, 318, 328, 387, 509, 615
MroNI GCCGGC 2 cut(s) 28, 254
MseI TTAA 4 cut(s) 374, 474, 483, 692
MslI CAYNNNNRTG 1 cut(s) 717
MspI CCGG 3 cut(s) 29, 255, 362
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 3 cut(s) 25, 38, 260
NaeI GCCGGC 2 cut(s) 30, 256
NdeII GATC 4 cut(s) 206, 246, 282, 304
NgoMIV GCCGGC 2 cut(s) 28, 254
NlaIII CATG 2 cut(s) 245, 716
NlaIV GGNNCC 3 cut(s) 253, 461, 744
PcsI WCGNNNNNNNCGW 2 cut(s) 185, 255
PdiI GCCGGC 2 cut(s) 30, 256
PleI GAGTC 2 cut(s) 218, 399
PpsI GAGTC 2 cut(s) 218, 399
Psp6I CCWGG 1 cut(s) 99
PspFI CCCAGC 1 cut(s) 647
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 3 cut(s) 253, 461, 744
PspPI GGNCC 2 cut(s) 252, 742
PsuI RGATCY 1 cut(s) 206
RsaI GTAC 3 cut(s) 401, 541, 570
RsaNI GTAC 3 cut(s) 400, 540, 569
RseI CAYNNNNRTG 1 cut(s) 717
SaqAI TTAA 4 cut(s) 374, 474, 483, 692
Sau3AI GATC 4 cut(s) 206, 246, 282, 304
Sau96I GGNCC 2 cut(s) 252, 742
SchI GAGTC 2 cut(s) 218, 399
ScrFI CCNGG 1 cut(s) 101
SfaNI GCATC 2 cut(s) 28, 250
SfcI CTRYAG 1 cut(s) 127
SinI GGWCC 1 cut(s) 742
SmiMI CAYNNNNRTG 1 cut(s) 717
SmlI CTYRAG 1 cut(s) 433
SmoI CTYRAG 1 cut(s) 433
Sse9I AATT 2 cut(s) 511, 608
SsiI CCGC 1 cut(s) 11
SspMI CTAG 4 cut(s) 77, 114, 210, 419
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 448
TaaI ACNGT 7 cut(s) 193, 280, 312, 464, 472, 629, 727
TaiI ACGT 1 cut(s) 273
TaqI TCGA 2 cut(s) 24, 408
TasI AATT 2 cut(s) 511, 608
TatI WGTACW 1 cut(s) 539
Tru1I TTAA 4 cut(s) 374, 474, 483, 692
Tru9I TTAA 4 cut(s) 374, 474, 483, 692
TscAI CASTG 1 cut(s) 285
TspDTI ATGAA 2 cut(s) 440, 494
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 1 cut(s) 285
VpaK11BI GGWCC 1 cut(s) 742
XapI RAATTY 1 cut(s) 608
XspI CTAG 4 cut(s) 77, 114, 210, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.