FvH4_1g29861

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000619
Physical Location & Seq
Reverse (-)
23512729 .. 23514088
1360 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29861.t1

Sequence Viewer

Length: 957 bp
ATGAAGCGTATTCAGAGGCAAGTGGGGTGGGGTAACTCGTTTACGGTGCCTTGTACAGTTGTGATTGATAGGAAAGGGAAGAGGAGAAGTAGAGTGGGAGGCTTATCGTTACATTGGGAGGATGATATTAAAGTTTCTCTACTTTCTTATTATTATTCCCATATTGATGTGATTATTGGGGAGAAGGAAGATCGATGGAGGTTCACAGGAATTTATGGCCAACCTAAAGCTGAGTTGAGACACCTGATGACCTGGGACCTTATTAGAAATTTGATGGAGAAGGAAAGTGGAGGTGTTAGGAGGAGGAAGTTAATGGATGATTTTAACGATGCATTAGGTGACTGCTCTTTGCAGAGTGCTAGTGGGGAAACTGTTTCTGAGTCTGATCCTTTTGTGAGAGTGTCCAACAAAATCGCAAATACCCGTGATGCCTTGATTAGTTGGAGTAAGGTGAAGTATGGAAGTCTGAAGATGGAGATAAAGGACATTCAAGCAAAACTTGCAGAGTTCTATGATCAATCTCTCTCGACAAACCCTAGCCCGATGAGACTTGACCTAGAATCCTGGGCGGAGGATGAGGATATCGAGGAAGTGGTCCTCCAATATTACAATAATCTTTTCACGACCTCAAACCCTAATGCAATGGAGGAGGTGACTGCAAACTTCTCAAGAGTGATTACGGATGAGATGAATGAAGCTTTTGAGAGGGAGGTTTCAGAGGAGGAGGTTTGGAGAGCTCTTAAACAGATGAAGCCAACAAAAGCTCCGGGCCTGGACGGTTTCGCACCATGTTTTTACCAAAGATTCTGGTCGATTGTATGCAAGGATGTGGTACATGCAATGTGGACATTCCTACAGAACGATGAGTATATAAGACACATCAACTGCACACATGTGACGCTGATACTGAAGGTGAAGACCCCGAAAACGGTTAGTCTGTCACACCACAATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

319

Amino Acids

36.89

Weight (kDa)

6.11

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AciI CCGC 1 cut(s) 569
AclWI GGATC 1 cut(s) 380
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 2 cut(s) 210, 268
AcuI CTGAAG 2 cut(s) 488, 929
AfaI GTAC 2 cut(s) 55, 834
AfiI CCNNNNNNNGG 1 cut(s) 928
AflIII ACRYGT 1 cut(s) 892
AgsI TTSAA 1 cut(s) 491
AjnI CCWGG 3 cut(s) 251, 563, 771
AleI CACNNNNGTG 1 cut(s) 893
AluBI AGCT 4 cut(s) 230, 698, 737, 764
AluI AGCT 4 cut(s) 230, 698, 737, 764
Alw21I GWGCWC 1 cut(s) 739
Alw26I GTCTC 2 cut(s) 232, 541
AlwI GGATC 1 cut(s) 380
AoxI GGCC 2 cut(s) 217, 769
ApoI RAATTY 2 cut(s) 210, 268
AspS9I GGNCC 3 cut(s) 256, 595, 769
AsuC2I CCSGG 1 cut(s) 768
AsuHPI GGTGA 4 cut(s) 350, 463, 664, 925
AvaII GGWCC 2 cut(s) 256, 595
BalI TGGCCA 1 cut(s) 219
BanI GGYRCC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 739
BbsI GAAGAC 1 cut(s) 923
Bbv12I GWGCWC 1 cut(s) 739
BccI CCATC 3 cut(s) 189, 268, 466
BciT130I CCWGG 3 cut(s) 253, 565, 773
BclI TGATCA 1 cut(s) 514
BcnI CCSGG 1 cut(s) 768
BcoDI GTCTC 2 cut(s) 232, 541
BfaI CTAG 3 cut(s) 360, 537, 557
BfmI CTRYAG 1 cut(s) 854
Bme1390I CCNGG 4 cut(s) 253, 565, 768, 773
Bme18I GGWCC 2 cut(s) 256, 595
BmgT120I GGNCC 3 cut(s) 256, 595, 769
BmiI GGNNCC 2 cut(s) 48, 257
BmrFI CCNGG 4 cut(s) 253, 565, 768, 773
BmsI GCATC 2 cut(s) 319, 418
BpiI GAAGAC 1 cut(s) 923
BpuEI CTTGAG 1 cut(s) 652
BpuMI CCSGG 1 cut(s) 768
Bsa29I ATCGAT 1 cut(s) 193
BsaJI CCNNGG 2 cut(s) 252, 564
BsaXI ACNNNNNCTCC 2 cut(s) 748, 778
Bsc4I CCNNNNNNNGG 1 cut(s) 928
Bse3DI GCAATG 2 cut(s) 648, 846
BseBI CCWGG 3 cut(s) 253, 565, 773
BseCI ATCGAT 1 cut(s) 193
BseDI CCNNGG 2 cut(s) 252, 564
BseGI GGATG 5 cut(s) 127, 322, 580, 688, 832
BseLI CCNNNNNNNGG 1 cut(s) 928
BseMI GCAATG 2 cut(s) 648, 846
BseMII CTCAG 2 cut(s) 222, 369
BseRI GAGGAG 5 cut(s) 97, 316, 662, 734, 737
BsgI GTGCAG 1 cut(s) 871
BshFI GGCC 2 cut(s) 219, 771
BshNI GGYRCC 1 cut(s) 46
BshVI ATCGAT 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 739
BsiSI CCGG 1 cut(s) 767
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 928
BsmAI GTCTC 2 cut(s) 232, 541
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 2 cut(s) 219, 771
Bsp1286I GDGCHC 1 cut(s) 739
Bsp1407I TGTACA 1 cut(s) 53
Bsp143I GATC 3 cut(s) 190, 385, 514
BspACI CCGC 1 cut(s) 569
BspANI GGCC 2 cut(s) 219, 771
BspCNI CTCAG 2 cut(s) 223, 370
BspDI ATCGAT 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 48, 257
BspPI GGATC 1 cut(s) 380
BspT107I GGYRCC 1 cut(s) 46
BsrDI GCAATG 2 cut(s) 648, 846
BsrGI TGTACA 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 252, 564
BssMI GATC 3 cut(s) 190, 385, 514
Bst2UI CCWGG 3 cut(s) 253, 565, 773
Bst4CI ACNGT 5 cut(s) 46, 58, 373, 779, 931
Bst6I CTCTTC 1 cut(s) 74
BstAPI GCANNNNNTGC 1 cut(s) 500
BstAUI TGTACA 1 cut(s) 53
BstDEI CTNAG 2 cut(s) 231, 378
BstF5I GGATG 5 cut(s) 127, 322, 580, 688, 832
BstKTI GATC 3 cut(s) 193, 388, 517
BstMAI GTCTC 2 cut(s) 232, 541
BstMBI GATC 3 cut(s) 190, 385, 514
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstNI CCWGG 3 cut(s) 253, 565, 773
BstNSI RCATGY 2 cut(s) 839, 896
BstSCI CCNGG 4 cut(s) 251, 563, 766, 771
BstSFI CTRYAG 1 cut(s) 854
BstV2I GAAGAC 1 cut(s) 923
Bsu15I ATCGAT 1 cut(s) 193
BsuRI GGCC 2 cut(s) 219, 771
BsuTUI ATCGAT 1 cut(s) 193
BtsCI GGATG 5 cut(s) 127, 322, 580, 688, 832
Cfr13I GGNCC 3 cut(s) 256, 595, 769
ClaI ATCGAT 1 cut(s) 193
CseI GACGC 1 cut(s) 907
Csp6I GTAC 2 cut(s) 54, 833
CspCI CAANNNNNGTGG 2 cut(s) 8, 43
CviAII CATG 3 cut(s) 789, 836, 893
CviJI RGCY 9 cut(s) 102, 219, 230, 540, 698, 737, 754, 764, 771
CviKI_1 RGCY 9 cut(s) 102, 219, 230, 540, 698, 737, 754, 764, 771
CviQI GTAC 2 cut(s) 54, 833
DdeI CTNAG 2 cut(s) 231, 378
DpnI GATC 3 cut(s) 192, 387, 516
DpnII GATC 3 cut(s) 190, 385, 514
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 1 cut(s) 584
Ecl136II GAGCTC 1 cut(s) 737
Eco24I GRGCYC 1 cut(s) 739
Eco32I GATATC 1 cut(s) 583
Eco47I GGWCC 2 cut(s) 256, 595
Eco53kI GAGCTC 1 cut(s) 737
Eco57I CTGAAG 2 cut(s) 488, 929
EcoICRI GAGCTC 1 cut(s) 737
EcoO109I RGGNCCY 1 cut(s) 256
EcoRII CCWGG 3 cut(s) 251, 563, 771
EcoRV GATATC 1 cut(s) 583
EcoT22I ATGCAT 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 739
FaeI CATG 3 cut(s) 792, 839, 896
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FaqI GGGAC 1 cut(s) 269
FatI CATG 3 cut(s) 788, 835, 892
FbaI TGATCA 1 cut(s) 514
FokI GGATG 5 cut(s) 134, 329, 587, 695, 839
FriOI GRGCYC 1 cut(s) 739
FspBI CTAG 3 cut(s) 360, 537, 557
HaeIII GGCC 2 cut(s) 219, 771
HapII CCGG 1 cut(s) 767
HgaI GACGC 1 cut(s) 907
Hin1II CATG 3 cut(s) 792, 839, 896
HindIII AAGCTT 1 cut(s) 696
HinfI GANTC 3 cut(s) 380, 560, 804
HpaII CCGG 1 cut(s) 767
HphI GGTGA 4 cut(s) 350, 463, 664, 925
Hpy166II GTNNAC 3 cut(s) 42, 204, 846
Hpy188I TCNGA 6 cut(s) 15, 379, 385, 468, 718, 956
Hpy188III TCNNGA 3 cut(s) 526, 622, 669
Hpy8I GTNNAC 3 cut(s) 42, 204, 846
HpyAV CCTTC 3 cut(s) 178, 274, 904
HpyCH4III ACNGT 5 cut(s) 46, 58, 373, 779, 931
HpyCH4V TGCA 8 cut(s) 332, 352, 503, 641, 659, 822, 839, 888
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 2 cut(s) 231, 378
Hsp92II CATG 3 cut(s) 792, 839, 896
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 3 cut(s) 190, 385, 514
LmnI GCTCC 1 cut(s) 769
LweI GCATC 2 cut(s) 319, 418
MaeI CTAG 3 cut(s) 360, 537, 557
MaeIII GTNAC 6 cut(s) 32, 108, 338, 652, 895, 939
MalI GATC 3 cut(s) 192, 387, 516
MboI GATC 3 cut(s) 190, 385, 514
MboII GAAGA 4 cut(s) 91, 200, 481, 928
MhlI GDGCHC 1 cut(s) 739
MlsI TGGCCA 1 cut(s) 219
MluCI AATT 3 cut(s) 210, 268, 949
MluNI TGGCCA 1 cut(s) 219
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 2 cut(s) 422, 429
Mox20I TGGCCA 1 cut(s) 219
Mph1103I ATGCAT 1 cut(s) 334
MscI TGGCCA 1 cut(s) 219
MseI TTAA 4 cut(s) 129, 311, 324, 741
MslI CAYNNNNRTG 2 cut(s) 165, 893
Msp20I TGGCCA 1 cut(s) 219
MspI CCGG 1 cut(s) 767
MspR9I CCNGG 4 cut(s) 253, 565, 768, 773
MvaI CCWGG 3 cut(s) 253, 565, 773
MwoI GCNNNNNNNGC 1 cut(s) 500
NciI CCSGG 1 cut(s) 768
NdeII GATC 3 cut(s) 190, 385, 514
NlaIII CATG 3 cut(s) 792, 839, 896
NlaIV GGNNCC 2 cut(s) 48, 257
NmuCI GTSAC 4 cut(s) 338, 652, 895, 939
NsiI ATGCAT 1 cut(s) 334
NspI RCATGY 2 cut(s) 839, 896
OliI CACNNNNGTG 1 cut(s) 893
PciI ACATGT 1 cut(s) 892
PfeI GAWTC 2 cut(s) 560, 804
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PpuMI RGGWCCY 1 cut(s) 256
PscI ACATGT 1 cut(s) 892
Psp124BI GAGCTC 1 cut(s) 739
Psp5II RGGWCCY 1 cut(s) 256
Psp6I CCWGG 3 cut(s) 251, 563, 771
PspGI CCWGG 3 cut(s) 251, 563, 771
PspN4I GGNNCC 2 cut(s) 48, 257
PspPI GGNCC 3 cut(s) 256, 595, 769
PspPPI RGGWCCY 1 cut(s) 256
RsaI GTAC 2 cut(s) 55, 834
RsaNI GTAC 2 cut(s) 54, 833
RseI CAYNNNNRTG 2 cut(s) 165, 893
SacI GAGCTC 1 cut(s) 739
SaqAI TTAA 4 cut(s) 129, 311, 324, 741
Sau3AI GATC 3 cut(s) 190, 385, 514
Sau96I GGNCC 3 cut(s) 256, 595, 769
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 4 cut(s) 253, 565, 768, 773
SduI GDGCHC 1 cut(s) 739
SfaNI GCATC 2 cut(s) 319, 418
SfcI CTRYAG 1 cut(s) 854
SinI GGWCC 2 cut(s) 256, 595
SmiMI CAYNNNNRTG 2 cut(s) 165, 893
SmlI CTYRAG 1 cut(s) 667
SmoI CTYRAG 1 cut(s) 667
Sse9I AATT 3 cut(s) 210, 268, 949
SsiI CCGC 1 cut(s) 569
SspI AATATT 1 cut(s) 605
SspMI CTAG 3 cut(s) 360, 537, 557
SstI GAGCTC 1 cut(s) 739
StyD4I CCNGG 4 cut(s) 251, 563, 766, 771
TaaI ACNGT 5 cut(s) 46, 58, 373, 779, 931
TaqI TCGA 4 cut(s) 193, 527, 585, 812
TasI AATT 3 cut(s) 210, 268, 949
TatI WGTACW 1 cut(s) 53
TfiI GAWTC 2 cut(s) 560, 804
Tru1I TTAA 4 cut(s) 129, 311, 324, 741
Tru9I TTAA 4 cut(s) 129, 311, 324, 741
TseFI GTSAC 4 cut(s) 338, 652, 895, 939
Tsp45I GTSAC 4 cut(s) 338, 652, 895, 939
TspDTI ATGAA 4 cut(s) 17, 704, 708, 764
TspGWI ACGGA 1 cut(s) 695
VpaK11BI GGWCC 2 cut(s) 256, 595
XapI RAATTY 2 cut(s) 210, 268
XceI RCATGY 2 cut(s) 839, 896
XspI CTAG 3 cut(s) 360, 537, 557
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.