Rh3BG140200

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000619
Physical Location & Seq
Reverse (-)
11884010 .. 11884363
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG140200.1

Sequence Viewer

Length: 354 bp
ATGGATGATTTTAAAAAGATTTTGGGGGATTGTTCTTTGAAGGATTTACACTACACTGGGCCTTGTTTCACGTGGAAAGGGGTTAGGCATGGTATTGACCTGAAGGTGAGGTTGGACAGGTTTGTGGCTAGTGAATCATGGTCTCAGCAGTTCCCGAAATCTCGGGTTATCCACCTGGCCCTAATGAATCTGATCACTTGCCAAATACTCTTGGAGGTGAGGAAGTCATGGAGGACGACTAGGAAGCGAAAGAAACGGTTTCGTTTTGAAGAATTTTGGTTACATGAAGATGATTGCAAAGAGATAGTTGACATGTGGGTTGGGACTCCGCGACCGGTGCTAACCCCTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

117

Amino Acids

14.09

Weight (kDa)

9.51

Isoelectric Point (pI)

27.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 331
AciI CCGC 1 cut(s) 329
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 122
AcvI CACGTG 1 cut(s) 72
AflIII ACRYGT 1 cut(s) 312
AgeI ACCGGT 1 cut(s) 334
AgsI TTSAA 2 cut(s) 40, 269
AjnI CCWGG 1 cut(s) 174
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
Alw26I GTCTC 1 cut(s) 147
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 2 cut(s) 59, 177
ApoI RAATTY 1 cut(s) 272
AsiGI ACCGGT 1 cut(s) 334
AspS9I GGNCC 2 cut(s) 59, 178
AsuHPI GGTGA 2 cut(s) 118, 229
AvaI CYCGRG 1 cut(s) 162
BbrPI CACGTG 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 176
BclI TGATCA 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 2 cut(s) 129, 240
Bme1390I CCNGG 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 59, 178
BmrFI CCNGG 1 cut(s) 176
BmrI ACTGGG 1 cut(s) 66
BmuI ACTGGG 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 347
BsaWI WCCGGW 1 cut(s) 334
Bse118I RCCGGY 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 347
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 331
Bsh1285I CGRYCG 1 cut(s) 335
BshFI GGCC 2 cut(s) 61, 179
BshTI ACCGGT 1 cut(s) 334
BsiEI CGRYCG 1 cut(s) 335
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 1 cut(s) 335
BslFI GGGAC 1 cut(s) 337
BsmAI GTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 337
BsnI GGCC 2 cut(s) 61, 179
Bso31I GGTCTC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 162
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 1 cut(s) 329
BspANI GGCC 2 cut(s) 61, 179
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 331
BspTNI GGTCTC 1 cut(s) 147
BsrFI RCCGGY 1 cut(s) 334
BsrI ACTGG 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 334
BssECI CCNNGG 1 cut(s) 347
BssMI GATC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 258
BstBAI YACGTR 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 331
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 192
BstMCI CGRYCG 1 cut(s) 335
BstMWI GCNNNNNNNGC 1 cut(s) 337
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 174
BstUI CGCG 1 cut(s) 331
BsuRI GGCC 2 cut(s) 61, 179
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 54
Cfr10I RCCGGY 1 cut(s) 334
Cfr13I GGNCC 2 cut(s) 59, 178
CspAI ACCGGT 1 cut(s) 334
CviAII CATG 5 cut(s) 89, 138, 228, 284, 313
CviJI RGCY 3 cut(s) 61, 128, 179
CviKI_1 RGCY 3 cut(s) 61, 128, 179
DdeI CTNAG 1 cut(s) 144
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
DraI TTTAAA 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 347
Eco31I GGTCTC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 122
Eco72I CACGTG 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 347
FaeI CATG 5 cut(s) 92, 141, 231, 287, 316
FaiI YATR 5 cut(s) 90, 139, 229, 285, 314
FaqI GGGAC 1 cut(s) 337
FatI CATG 5 cut(s) 88, 137, 227, 283, 312
FbaI TGATCA 1 cut(s) 192
FokI GGATG 1 cut(s) 17
FspBI CTAG 2 cut(s) 129, 240
HaeIII GGCC 2 cut(s) 61, 179
HapII CCGG 1 cut(s) 335
Hin1II CATG 5 cut(s) 92, 141, 231, 287, 316
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 3 cut(s) 134, 187, 325
HpaII CCGG 1 cut(s) 335
HphI GGTGA 2 cut(s) 118, 229
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 2 cut(s) 34, 97
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 1 cut(s) 297
HpyF10VI GCNNNNNNNGC 1 cut(s) 337
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 1 cut(s) 71
Hsp92II CATG 5 cut(s) 92, 141, 231, 287, 316
Ksp22I TGATCA 1 cut(s) 192
Kzo9I GATC 1 cut(s) 192
LpnPI CCDG 6 cut(s) 42, 103, 113, 161, 188, 348
MaeI CTAG 2 cut(s) 129, 240
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 279
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 2 cut(s) 281, 299
MluCI AATT 1 cut(s) 272
MlyI GAGTC 1 cut(s) 319
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 4 cut(s) 102, 208, 213, 225
MseI TTAA 1 cut(s) 12
MslI CAYNNNNRTG 1 cut(s) 288
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 331
MwoI GCNNNNNNNGC 1 cut(s) 337
NdeII GATC 1 cut(s) 192
NlaIII CATG 5 cut(s) 92, 141, 231, 287, 316
NspI RCATGY 1 cut(s) 316
PciI ACATGT 1 cut(s) 312
PfeI GAWTC 2 cut(s) 134, 187
PinAI ACCGGT 1 cut(s) 334
PleI GAGTC 1 cut(s) 319
PmaCI CACGTG 1 cut(s) 72
PmlI CACGTG 1 cut(s) 72
PpsI GAGTC 1 cut(s) 319
Ppu21I YACGTR 1 cut(s) 72
PscI ACATGT 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 174
PspCI CACGTG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 174
PspPI GGNCC 2 cut(s) 59, 178
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 1 cut(s) 12
Sau3AI GATC 1 cut(s) 192
Sau96I GGNCC 2 cut(s) 59, 178
SchI GAGTC 1 cut(s) 319
ScrFI CCNGG 1 cut(s) 176
SetI ASST 7 cut(s) 74, 102, 108, 113, 122, 177, 219
SmiMI CAYNNNNRTG 1 cut(s) 288
Sse9I AATT 1 cut(s) 272
SsiI CCGC 1 cut(s) 329
SspMI CTAG 2 cut(s) 129, 240
StyD4I CCNGG 1 cut(s) 174
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 1 cut(s) 258
TaiI ACGT 1 cut(s) 74
TasI AATT 1 cut(s) 272
TfiI GAWTC 2 cut(s) 134, 187
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 200, 300
TspRI CASTG 1 cut(s) 61
XapI RAATTY 1 cut(s) 272
XceI RCATGY 1 cut(s) 316
XspI CTAG 2 cut(s) 129, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.