Rh5AG347700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000619
Physical Location & Seq
Forward (+)
57360669 .. 57404071
43403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG347700.1

Sequence Viewer

Length: 642 bp
ATGCAGGTCCCAGATTTTCCTATTTCTGGGATGGTTAGAGGGAGAGAGGAGTGGAAGGAGGAAGAGGAAGGGAAACAGAGGCCTGAGGAAATGGAGTTTGATAGTTTTCCGGCCGGTAGACTGGCGGAGGGGGAGAAACCTAGTAAACGGCAGTGTCCGACAGTGGCGGAAATGATGACTCCGGGTTTAGAAACTACTTCGGGAATAGATTCAATCATTGATGATGGATCAGATCTGAAACCAACATTGATGGTTAATGGGTCTAGTTTTGGAATGCTTGCTCTGAGTTCGGTCTCAGGAAGGATGTGGAGTAATTTGGGCTCCCAAAGTTTGGAGCATGATTGTAGTATCCCATCATTGGGGGCGGAAAGTAAGATCGAGAAAACCGAGTTGACTTTGGAGGGGTCCTTAGATTTGGTGACAGCTGGCAGCCATCATGATGGTAATTCTCTATCTTTGGGGAATGGAGATGGGCTTTCTCTAACAAGGAACATAAGATGCATTTGCAAAGAACCTTATCAATTGATTTGCATTCAACAACTGATGAGCAATAACAAGGTTCAAGACATATGCCCTATTATTTACCATAAGGTGGCTGAAACTATGGGAGAGACCACATATTGCAACATCTATATATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.37

Weight (kDa)

4.66

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 331, 592
AccI GTMKAC 1 cut(s) 118
AciI CCGC 3 cut(s) 125, 167, 365
AclWI GGATC 1 cut(s) 235
AcoI YGGCCR 1 cut(s) 111
AfiI CCNNNNNNNGG 5 cut(s) 26, 331, 358, 359, 592
AgsI TTSAA 3 cut(s) 213, 536, 563
AluBI AGCT 1 cut(s) 425
AluI AGCT 1 cut(s) 425
Alw26I GTCTC 2 cut(s) 298, 605
AlwI GGATC 1 cut(s) 235
AoxI GGCC 2 cut(s) 80, 111
ApeKI GCWGC 1 cut(s) 429
Asp700I GAANNNNTTC 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 7, 405
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 430
AvaII GGWCC 2 cut(s) 7, 405
AxyI CCTNAGG 1 cut(s) 84
BanII GRGCYC 1 cut(s) 323
BbvI GCAGC 1 cut(s) 441
BccI CCATC 7 cut(s) 25, 218, 244, 361, 434, 441, 464
BceAI ACGGC 1 cut(s) 164
BciVI GTATCC 1 cut(s) 359
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 298, 605
BfaI CTAG 2 cut(s) 141, 264
BfuI GTATCC 1 cut(s) 359
BglII AGATCT 1 cut(s) 232
BisI GCNGC 1 cut(s) 430
BlsI GCNGC 1 cut(s) 431
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 2 cut(s) 7, 405
BmgT120I GGNCC 2 cut(s) 7, 405
BmiI GGNNCC 3 cut(s) 9, 322, 406
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 488
BpuMI CCSGG 1 cut(s) 183
BsaI GGTCTC 2 cut(s) 298, 605
Bsc4I CCNNNNNNNGG 5 cut(s) 26, 331, 358, 359, 592
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 126
Bse21I CCTNAGG 1 cut(s) 84
BseGI GGATG 2 cut(s) 36, 309
BseLI CCNNNNNNNGG 5 cut(s) 26, 331, 358, 359, 592
BseMII CTCAG 3 cut(s) 75, 275, 309
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 62
BseX3I CGGCCG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 441
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 2 cut(s) 82, 113
BsiEI CGRYCG 1 cut(s) 114
BsiSI CCGG 3 cut(s) 110, 114, 182
BslI CCNNNNNNNGG 5 cut(s) 26, 331, 358, 359, 592
BsmAI GTCTC 2 cut(s) 298, 605
BsmI GAATGC 2 cut(s) 279, 531
BsnI GGCC 2 cut(s) 82, 113
Bso31I GGTCTC 2 cut(s) 298, 605
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 3 cut(s) 227, 232, 375
BspACI CCGC 3 cut(s) 125, 167, 365
BspANI GGCC 2 cut(s) 82, 113
BspCNI CTCAG 3 cut(s) 76, 276, 308
BspHI TCATGA 1 cut(s) 436
BspLI GGNNCC 3 cut(s) 9, 322, 406
BspPI GGATC 1 cut(s) 235
BspTNI GGTCTC 2 cut(s) 298, 605
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 1 cut(s) 126
BssAI RCCGGY 1 cut(s) 113
BssMI GATC 3 cut(s) 227, 232, 375
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 279, 427
BstDEI CTNAG 4 cut(s) 84, 284, 295, 409
BstF5I GGATG 2 cut(s) 36, 309
BstKTI GATC 3 cut(s) 230, 235, 378
BstMAI GTCTC 2 cut(s) 298, 605
BstMBI GATC 3 cut(s) 227, 232, 375
BstMCI CGRYCG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 441
BstX2I RGATCY 1 cut(s) 232
BstXI CCANNNNNNTGG 1 cut(s) 440
BstYI RGATCY 1 cut(s) 232
BstZI CGGCCG 1 cut(s) 111
Bsu36I CCTNAGG 1 cut(s) 84
BsuI GTATCC 1 cut(s) 359
BsuRI GGCC 2 cut(s) 82, 113
BtsCI GGATG 2 cut(s) 36, 309
BtsI GCAGTG 1 cut(s) 158
BtsIMutI CAGTG 2 cut(s) 158, 168
Cac8I GCNNGC 2 cut(s) 279, 427
CciI TCATGA 1 cut(s) 436
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 7, 405
CviAII CATG 2 cut(s) 338, 437
CviJI RGCY 7 cut(s) 82, 113, 321, 425, 432, 475, 596
CviKI_1 RGCY 7 cut(s) 82, 113, 321, 425, 432, 475, 596
DdeI CTNAG 4 cut(s) 84, 284, 295, 409
DpnI GATC 3 cut(s) 229, 234, 377
DpnII GATC 3 cut(s) 227, 232, 375
EaeI YGGCCR 1 cut(s) 111
EagI CGGCCG 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 3 cut(s) 140, 182, 380
EclXI CGGCCG 1 cut(s) 111
Eco147I AGGCCT 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 323
Eco31I GGTCTC 2 cut(s) 298, 605
Eco47I GGWCC 2 cut(s) 7, 405
Eco52I CGGCCG 1 cut(s) 111
Eco81I CCTNAGG 1 cut(s) 84
EcoO109I RGGNCCY 2 cut(s) 7, 405
EcoT22I ATGCAT 1 cut(s) 503
EcoT38I GRGCYC 1 cut(s) 323
FaeI CATG 2 cut(s) 341, 440
FatI CATG 2 cut(s) 337, 436
FauNDI CATATG 1 cut(s) 569
FblI GTMKAC 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 430
FokI GGATG 2 cut(s) 43, 316
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 1 cut(s) 430
FspBI CTAG 2 cut(s) 141, 264
GluI GCNGC 1 cut(s) 430
HaeIII GGCC 2 cut(s) 82, 113
HapII CCGG 3 cut(s) 110, 114, 182
Hin1II CATG 2 cut(s) 341, 440
HincII GTYRAC 1 cut(s) 393
HindII GTYRAC 1 cut(s) 393
HinfI GANTC 2 cut(s) 178, 209
HpaII CCGG 3 cut(s) 110, 114, 182
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 3 cut(s) 119, 146, 393
Hpy188I TCNGA 4 cut(s) 159, 232, 237, 285
Hpy188III TCNNGA 5 cut(s) 201, 297, 379, 437, 563
Hpy8I GTNNAC 3 cut(s) 119, 146, 393
HpyAV CCTTC 3 cut(s) 49, 62, 294
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 5 cut(s) 4, 501, 507, 531, 624
HpyF3I CTNAG 4 cut(s) 84, 284, 295, 409
Hsp92II CATG 2 cut(s) 341, 440
Kzo9I GATC 3 cut(s) 227, 232, 375
LmnI GCTCC 2 cut(s) 326, 334
LpnPI CCDG 9 cut(s) 12, 24, 96, 107, 123, 127, 195, 282, 411
Lsp1109I GCAGC 1 cut(s) 441
LweI GCATC 1 cut(s) 488
MaeI CTAG 2 cut(s) 141, 264
MaeIII GTNAC 1 cut(s) 418
MalI GATC 3 cut(s) 229, 234, 377
MboI GATC 3 cut(s) 227, 232, 375
MboII GAAGA 1 cut(s) 74
MfeI CAATTG 1 cut(s) 521
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 3 cut(s) 313, 445, 521
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 8 cut(s) 32, 40, 52, 58, 72, 79, 121, 394
Mph1103I ATGCAT 1 cut(s) 503
MroXI GAANNNNTTC 1 cut(s) 208
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 438
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 3 cut(s) 110, 114, 182
MspR9I CCNGG 1 cut(s) 183
MunI CAATTG 1 cut(s) 521
Mva1269I GAATGC 2 cut(s) 279, 531
NciI CCSGG 1 cut(s) 183
NdeI CATATG 1 cut(s) 569
NdeII GATC 3 cut(s) 227, 232, 375
NlaIII CATG 2 cut(s) 341, 440
NlaIV GGNNCC 3 cut(s) 9, 322, 406
NmuCI GTSAC 1 cut(s) 418
NsiI ATGCAT 1 cut(s) 503
PagI TCATGA 1 cut(s) 436
PceI AGGCCT 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PctI GAATGC 2 cut(s) 279, 531
PdmI GAANNNNTTC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 209
PflMI CCANNNNNTGG 2 cut(s) 331, 592
PkrI GCNGC 1 cut(s) 431
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PpuMI RGGWCCY 2 cut(s) 7, 405
Psp5II RGGWCCY 2 cut(s) 7, 405
PspN4I GGNNCC 3 cut(s) 9, 322, 406
PspPI GGNCC 2 cut(s) 7, 405
PspPPI RGGWCCY 2 cut(s) 7, 405
PsuI RGATCY 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 425
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 1 cut(s) 430
Sau3AI GATC 3 cut(s) 227, 232, 375
Sau96I GGNCC 2 cut(s) 7, 405
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 1 cut(s) 323
SetI ASST 6 cut(s) 9, 142, 427, 517, 561, 594
SfaNI GCATC 1 cut(s) 488
SinI GGWCC 2 cut(s) 7, 405
SmiMI CAYNNNNRTG 1 cut(s) 438
Sse9I AATT 3 cut(s) 313, 445, 521
SseBI AGGCCT 1 cut(s) 82
SsiI CCGC 3 cut(s) 125, 167, 365
SspMI CTAG 2 cut(s) 141, 264
StuI AGGCCT 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 1 cut(s) 378
TaqII GACCGA 1 cut(s) 280
TasI AATT 3 cut(s) 313, 445, 521
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 2 cut(s) 158, 168
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 1 cut(s) 429
Tsp45I GTSAC 1 cut(s) 418
TspRI CASTG 2 cut(s) 158, 168
Van91I CCANNNNNTGG 2 cut(s) 331, 592
VpaK11BI GGWCC 2 cut(s) 7, 405
XmiI GTMKAC 1 cut(s) 118
XmnI GAANNNNTTC 1 cut(s) 208
XspI CTAG 2 cut(s) 141, 264
Zsp2I ATGCAT 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.