ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RST | PF12174 | 276 - 341 | 2.7e-24 | RCD1-SRO-TAF4 (RST) plant domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 116 |
| AccII | CGCG | 2 cut(s) | 180, 365 |
| AciI | CCGC | 6 cut(s) | 12, 56, 59, 178, 180, 1101 |
| AcoI | YGGCCR | 1 cut(s) | 472 |
| AcuI | CTGAAG | 1 cut(s) | 757 |
| AcyI | GRCGYC | 2 cut(s) | 113, 210 |
| AfaI | GTAC | 3 cut(s) | 716, 730, 1085 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 39, 199, 205 |
| AflIII | ACRYGT | 1 cut(s) | 363 |
| AgsI | TTSAA | 3 cut(s) | 20, 382, 805 |
| AjiI | CACGTC | 1 cut(s) | 301 |
| AjnI | CCWGG | 1 cut(s) | 637 |
| AluBI | AGCT | 4 cut(s) | 126, 386, 771, 779 |
| AluI | AGCT | 4 cut(s) | 126, 386, 771, 779 |
| Alw21I | GWGCWC | 2 cut(s) | 128, 781 |
| Alw26I | GTCTC | 3 cut(s) | 104, 154, 981 |
| AoxI | GGCC | 1 cut(s) | 472 |
| ApeKI | GCWGC | 3 cut(s) | 165, 358, 634 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 153, 185, 683, 715 |
| AseI | ATTAAT | 1 cut(s) | 318 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 797, 819 |
| AspLEI | GCGC | 1 cut(s) | 298 |
| AspS9I | GGNCC | 1 cut(s) | 1112 |
| AsuC2I | CCSGG | 3 cut(s) | 200, 214, 355 |
| AsuHPI | GGTGA | 4 cut(s) | 94, 295, 531, 828 |
| AsuII | TTCGAA | 4 cut(s) | 446, 461, 823, 875 |
| AvaII | GGWCC | 1 cut(s) | 1112 |
| AxyI | CCTNAGG | 1 cut(s) | 118 |
| BalI | TGGCCA | 1 cut(s) | 474 |
| BanII | GRGCYC | 2 cut(s) | 128, 781 |
| BbsI | GAAGAC | 3 cut(s) | 575, 582, 812 |
| Bbv12I | GWGCWC | 2 cut(s) | 128, 781 |
| BbvCI | CCTCAGC | 1 cut(s) | 888 |
| BbvI | GCAGC | 3 cut(s) | 177, 345, 621 |
| BccI | CCATC | 1 cut(s) | 32 |
| BceAI | ACGGC | 2 cut(s) | 327, 588 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 350, 384, 865, 899 |
| BciT130I | CCWGG | 1 cut(s) | 639 |
| BclI | TGATCA | 1 cut(s) | 906 |
| BcnI | CCSGG | 3 cut(s) | 200, 214, 355 |
| BcoDI | GTCTC | 3 cut(s) | 104, 154, 981 |
| BfaI | CTAG | 2 cut(s) | 174, 894 |
| BglII | AGATCT | 2 cut(s) | 942, 1143 |
| BisI | GCNGC | 7 cut(s) | 56, 59, 166, 178, 181, 359, 635 |
| BlsI | GCNGC | 7 cut(s) | 57, 60, 167, 179, 182, 360, 636 |
| BmcAI | AGTACT | 1 cut(s) | 730 |
| Bme1390I | CCNGG | 4 cut(s) | 200, 214, 355, 639 |
| Bme18I | GGWCC | 1 cut(s) | 1112 |
| BmgBI | CACGTC | 1 cut(s) | 301 |
| BmgT120I | GGNCC | 1 cut(s) | 1112 |
| BmiI | GGNNCC | 1 cut(s) | 816 |
| BmrFI | CCNGG | 4 cut(s) | 200, 214, 355, 639 |
| BmrI | ACTGGG | 1 cut(s) | 657 |
| BmsI | GCATC | 2 cut(s) | 598, 834 |
| BmuI | ACTGGG | 1 cut(s) | 657 |
| BoxI | GACNNNNGTC | 1 cut(s) | 192 |
| BpiI | GAAGAC | 3 cut(s) | 575, 582, 812 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 101, 133 |
| Bpu10I | CCTNAGC | 1 cut(s) | 888 |
| Bpu14I | TTCGAA | 4 cut(s) | 446, 461, 823, 875 |
| BpuEI | CTTGAG | 2 cut(s) | 583, 931 |
| BpuMI | CCSGG | 3 cut(s) | 200, 214, 355 |
| BsaHI | GRCGYC | 2 cut(s) | 113, 210 |
| BsaI | GGTCTC | 1 cut(s) | 154 |
| BsaJI | CCNNGG | 3 cut(s) | 178, 475, 839 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 285, 315, 383, 413 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 39, 199, 205 |
| Bse1I | ACTGG | 1 cut(s) | 663 |
| Bse21I | CCTNAGG | 1 cut(s) | 118 |
| Bse3DI | GCAATG | 1 cut(s) | 897 |
| BseBI | CCWGG | 1 cut(s) | 639 |
| BseDI | CCNNGG | 3 cut(s) | 178, 475, 839 |
| BseGI | GGATG | 2 cut(s) | 658, 849 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 39, 199, 205 |
| BseMI | GCAATG | 1 cut(s) | 897 |
| BseMII | CTCAG | 4 cut(s) | 132, 824, 902, 1070 |
| BseNI | ACTGG | 1 cut(s) | 663 |
| BseXI | GCAGC | 3 cut(s) | 177, 345, 621 |
| BsgI | GTGCAG | 1 cut(s) | 344 |
| Bsh1236I | CGCG | 2 cut(s) | 180, 365 |
| Bsh1285I | CGRYCG | 1 cut(s) | 193 |
| BshFI | GGCC | 1 cut(s) | 474 |
| BsiEI | CGRYCG | 1 cut(s) | 193 |
| BsiHKAI | GWGCWC | 2 cut(s) | 128, 781 |
| BsiSI | CCGG | 5 cut(s) | 199, 213, 355, 623, 755 |
| BslFI | GGGAC | 1 cut(s) | 251 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 39, 199, 205 |
| BsmAI | GTCTC | 3 cut(s) | 104, 154, 981 |
| BsmBI | CGTCTC | 1 cut(s) | 104 |
| BsmFI | GGGAC | 1 cut(s) | 251 |
| BsmI | GAATGC | 1 cut(s) | 1078 |
| BsnI | GGCC | 1 cut(s) | 474 |
| Bso31I | GGTCTC | 1 cut(s) | 154 |
| Bsp119I | TTCGAA | 4 cut(s) | 446, 461, 823, 875 |
| Bsp1286I | GDGCHC | 2 cut(s) | 128, 781 |
| Bsp143I | GATC | 7 cut(s) | 82, 133, 465, 498, 906, 942, 1143 |
| Bsp19I | CCATGG | 2 cut(s) | 475, 839 |
| BspACI | CCGC | 6 cut(s) | 12, 56, 59, 178, 180, 1101 |
| BspANI | GGCC | 1 cut(s) | 474 |
| BspCNI | CTCAG | 4 cut(s) | 131, 823, 901, 1069 |
| BspFNI | CGCG | 2 cut(s) | 180, 365 |
| BspLI | GGNNCC | 1 cut(s) | 816 |
| BspT104I | TTCGAA | 4 cut(s) | 446, 461, 823, 875 |
| BspTNI | GGTCTC | 1 cut(s) | 154 |
| BsrDI | GCAATG | 1 cut(s) | 897 |
| BsrI | ACTGG | 1 cut(s) | 663 |
| BssECI | CCNNGG | 3 cut(s) | 178, 475, 839 |
| BssMI | GATC | 7 cut(s) | 82, 133, 465, 498, 906, 942, 1143 |
| BssNI | GRCGYC | 2 cut(s) | 113, 210 |
| BssT1I | CCWWGG | 2 cut(s) | 475, 839 |
| Bst2UI | CCWGG | 1 cut(s) | 639 |
| Bst4CI | ACNGT | 5 cut(s) | 194, 307, 491, 581, 654 |
| BstACI | GRCGYC | 2 cut(s) | 113, 210 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 595 |
| BstBI | TTCGAA | 4 cut(s) | 446, 461, 823, 875 |
| BstC8I | GCNNGC | 3 cut(s) | 363, 999, 1099 |
| BstDEI | CTNAG | 4 cut(s) | 118, 810, 888, 1056 |
| BstDSI | CCRYGG | 3 cut(s) | 178, 475, 839 |
| BstF5I | GGATG | 2 cut(s) | 658, 849 |
| BstFNI | CGCG | 2 cut(s) | 180, 365 |
| BstHHI | GCGC | 1 cut(s) | 298 |
| BstKTI | GATC | 7 cut(s) | 85, 136, 468, 501, 909, 945, 1146 |
| BstMAI | GTCTC | 3 cut(s) | 104, 154, 981 |
| BstMBI | GATC | 7 cut(s) | 82, 133, 465, 498, 906, 942, 1143 |
| BstMCI | CGRYCG | 1 cut(s) | 193 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 165, 174, 295, 595 |
| BstNI | CCWGG | 1 cut(s) | 639 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 192 |
| BstSCI | CCNGG | 4 cut(s) | 198, 212, 353, 637 |
| BstUI | CGCG | 2 cut(s) | 180, 365 |
| BstV1I | GCAGC | 3 cut(s) | 177, 345, 621 |
| BstV2I | GAAGAC | 3 cut(s) | 575, 582, 812 |
| BstX2I | RGATCY | 2 cut(s) | 942, 1143 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 482 |
| BstYI | RGATCY | 2 cut(s) | 942, 1143 |
| Bsu36I | CCTNAGG | 1 cut(s) | 118 |
| BsuRI | GGCC | 1 cut(s) | 474 |
| BtgI | CCRYGG | 3 cut(s) | 178, 475, 839 |
| BtrI | CACGTC | 1 cut(s) | 301 |
| BtsCI | GGATG | 2 cut(s) | 658, 849 |
| BtsIMutI | CAGTG | 2 cut(s) | 487, 871 |
| Cac8I | GCNNGC | 3 cut(s) | 363, 999, 1099 |
| CfoI | GCGC | 1 cut(s) | 298 |
| Cfr13I | GGNCC | 1 cut(s) | 1112 |
| Cfr42I | CCGCGG | 1 cut(s) | 181 |
| CseI | GACGC | 2 cut(s) | 157, 218 |
| Csp6I | GTAC | 3 cut(s) | 715, 729, 1084 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 385, 420 |
| CviAII | CATG | 3 cut(s) | 476, 736, 840 |
| CviQI | GTAC | 3 cut(s) | 715, 729, 1084 |
| DdeI | CTNAG | 4 cut(s) | 118, 810, 888, 1056 |
| DpnI | GATC | 7 cut(s) | 84, 135, 467, 500, 908, 944, 1145 |
| DpnII | GATC | 7 cut(s) | 82, 133, 465, 498, 906, 942, 1143 |
| EaeI | YGGCCR | 1 cut(s) | 472 |
| Ecl136II | GAGCTC | 2 cut(s) | 126, 779 |
| Eco130I | CCWWGG | 2 cut(s) | 475, 839 |
| Eco24I | GRGCYC | 2 cut(s) | 128, 781 |
| Eco31I | GGTCTC | 1 cut(s) | 154 |
| Eco47I | GGWCC | 1 cut(s) | 1112 |
| Eco53kI | GAGCTC | 2 cut(s) | 126, 779 |
| Eco57I | CTGAAG | 1 cut(s) | 757 |
| Eco81I | CCTNAGG | 1 cut(s) | 118 |
| EcoICRI | GAGCTC | 2 cut(s) | 126, 779 |
| EcoRII | CCWGG | 1 cut(s) | 637 |
| EcoT14I | CCWWGG | 2 cut(s) | 475, 839 |
| EcoT38I | GRGCYC | 2 cut(s) | 128, 781 |
| ErhI | CCWWGG | 2 cut(s) | 475, 839 |
| Esp3I | CGTCTC | 1 cut(s) | 104 |
| FaeI | CATG | 3 cut(s) | 479, 739, 843 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 567, 599 |
| FaqI | GGGAC | 1 cut(s) | 251 |
| FatI | CATG | 3 cut(s) | 475, 735, 839 |
| FbaI | TGATCA | 1 cut(s) | 906 |
| Fnu4HI | GCNGC | 7 cut(s) | 56, 59, 166, 178, 181, 359, 635 |
| FokI | GGATG | 2 cut(s) | 645, 856 |
| FriOI | GRGCYC | 2 cut(s) | 128, 781 |
| Fsp4HI | GCNGC | 7 cut(s) | 56, 59, 166, 178, 181, 359, 635 |
| FspBI | CTAG | 2 cut(s) | 174, 894 |
| GlaI | GCGC | 1 cut(s) | 297 |
| GluI | GCNGC | 7 cut(s) | 56, 59, 166, 178, 181, 359, 635 |
| HaeIII | GGCC | 1 cut(s) | 474 |
| HapII | CCGG | 5 cut(s) | 199, 213, 355, 623, 755 |
| HgaI | GACGC | 2 cut(s) | 157, 218 |
| HhaI | GCGC | 1 cut(s) | 298 |
| Hin1I | GRCGYC | 2 cut(s) | 113, 210 |
| Hin1II | CATG | 3 cut(s) | 479, 739, 843 |
| Hin6I | GCGC | 1 cut(s) | 296 |
| HinP1I | GCGC | 1 cut(s) | 296 |
| HinfI | GANTC | 6 cut(s) | 95, 140, 243, 536, 680, 808 |
| HpaII | CCGG | 5 cut(s) | 199, 213, 355, 623, 755 |
| HphI | GGTGA | 4 cut(s) | 94, 295, 531, 828 |
| Hpy166II | GTNNAC | 6 cut(s) | 45, 247, 376, 691, 956, 1132 |
| Hpy188I | TCNGA | 9 cut(s) | 37, 82, 94, 130, 154, 441, 649, 776, 1022 |
| Hpy188III | TCNNGA | 5 cut(s) | 137, 530, 802, 812, 1058 |
| Hpy8I | GTNNAC | 6 cut(s) | 45, 247, 376, 691, 956, 1132 |
| Hpy99I | CGWCG | 4 cut(s) | 134, 188, 191, 198 |
| HpyAV | CCTTC | 1 cut(s) | 227 |
| HpyCH4III | ACNGT | 5 cut(s) | 194, 307, 491, 581, 654 |
| HpyCH4IV | ACGT | 3 cut(s) | 22, 113, 300 |
| HpyCH4V | TGCA | 3 cut(s) | 361, 1045, 1097 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 165, 174, 295, 595 |
| HpyF3I | CTNAG | 4 cut(s) | 118, 810, 888, 1056 |
| HpySE526I | ACGT | 3 cut(s) | 22, 113, 300 |
| Hsp92I | GRCGYC | 2 cut(s) | 113, 210 |
| Hsp92II | CATG | 3 cut(s) | 479, 739, 843 |
| HspAI | GCGC | 1 cut(s) | 296 |
| Ksp22I | TGATCA | 1 cut(s) | 906 |
| KspI | CCGCGG | 1 cut(s) | 181 |
| Kzo9I | GATC | 7 cut(s) | 82, 133, 465, 498, 906, 942, 1143 |
| LmnI | GCTCC | 6 cut(s) | 123, 131, 293, 532, 709, 784 |
| Lsp1109I | GCAGC | 3 cut(s) | 177, 345, 621 |
| LweI | GCATC | 2 cut(s) | 598, 834 |
| MaeI | CTAG | 2 cut(s) | 174, 894 |
| MaeII | ACGT | 3 cut(s) | 22, 113, 300 |
| MaeIII | GTNAC | 5 cut(s) | 100, 169, 301, 307, 485 |
| MalI | GATC | 7 cut(s) | 84, 135, 467, 500, 908, 944, 1145 |
| MboI | GATC | 7 cut(s) | 82, 133, 465, 498, 906, 942, 1143 |
| MboII | GAAGA | 6 cut(s) | 475, 575, 581, 587, 817, 952 |
| MflI | RGATCY | 2 cut(s) | 942, 1143 |
| MhlI | GDGCHC | 2 cut(s) | 128, 781 |
| MlsI | TGGCCA | 1 cut(s) | 474 |
| MluCI | AATT | 5 cut(s) | 502, 643, 819, 849, 969 |
| MluI | ACGCGT | 1 cut(s) | 363 |
| MluNI | TGGCCA | 1 cut(s) | 474 |
| MlyI | GAGTC | 2 cut(s) | 252, 802 |
| MmeI | TCCRAC | 4 cut(s) | 153, 186, 878, 1059 |
| MnlI | CCTC | 8 cut(s) | 43, 61, 127, 263, 385, 506, 897, 1058 |
| Mox20I | TGGCCA | 1 cut(s) | 474 |
| MroXI | GAANNNNTTC | 2 cut(s) | 797, 819 |
| MscI | TGGCCA | 1 cut(s) | 474 |
| MseI | TTAA | 2 cut(s) | 318, 1136 |
| Msp20I | TGGCCA | 1 cut(s) | 474 |
| MspA1I | CMGCKG | 2 cut(s) | 12, 180 |
| MspI | CCGG | 5 cut(s) | 199, 213, 355, 623, 755 |
| MspR9I | CCNGG | 4 cut(s) | 200, 214, 355, 639 |
| Mva1269I | GAATGC | 1 cut(s) | 1078 |
| MvaI | CCWGG | 1 cut(s) | 639 |
| MvnI | CGCG | 2 cut(s) | 180, 365 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 165, 174, 295, 595 |
| NciI | CCSGG | 3 cut(s) | 200, 214, 355 |
| NcoI | CCATGG | 2 cut(s) | 475, 839 |
| NdeII | GATC | 7 cut(s) | 82, 133, 465, 498, 906, 942, 1143 |
| NlaIII | CATG | 3 cut(s) | 479, 739, 843 |
| NlaIV | GGNNCC | 1 cut(s) | 816 |
| NmeAIII | GCCGAG | 1 cut(s) | 478 |
| NmuCI | GTSAC | 4 cut(s) | 100, 169, 301, 485 |
| NspV | TTCGAA | 4 cut(s) | 446, 461, 823, 875 |
| PctI | GAATGC | 1 cut(s) | 1078 |
| PdmI | GAANNNNTTC | 2 cut(s) | 797, 819 |
| PfeI | GAWTC | 4 cut(s) | 95, 140, 536, 680 |
| PflFI | GACNNNGTC | 1 cut(s) | 242 |
| PkrI | GCNGC | 7 cut(s) | 57, 60, 167, 179, 182, 360, 636 |
| PleI | GAGTC | 2 cut(s) | 251, 802 |
| PpsI | GAGTC | 2 cut(s) | 251, 802 |
| PshAI | GACNNNNGTC | 1 cut(s) | 192 |
| PshBI | ATTAAT | 1 cut(s) | 318 |
| Psp124BI | GAGCTC | 2 cut(s) | 128, 781 |
| Psp6I | CCWGG | 1 cut(s) | 637 |
| PspGI | CCWGG | 1 cut(s) | 637 |
| PspN4I | GGNNCC | 1 cut(s) | 816 |
| PspPI | GGNCC | 1 cut(s) | 1112 |
| PsuI | RGATCY | 2 cut(s) | 942, 1143 |
| PsyI | GACNNNGTC | 1 cut(s) | 242 |
| RsaI | GTAC | 3 cut(s) | 716, 730, 1085 |
| RsaNI | GTAC | 3 cut(s) | 715, 729, 1084 |
| SacI | GAGCTC | 2 cut(s) | 128, 781 |
| SacII | CCGCGG | 1 cut(s) | 181 |
| SaqAI | TTAA | 2 cut(s) | 318, 1136 |
| SatI | GCNGC | 7 cut(s) | 56, 59, 166, 178, 181, 359, 635 |
| Sau3AI | GATC | 7 cut(s) | 82, 133, 465, 498, 906, 942, 1143 |
| Sau96I | GGNCC | 1 cut(s) | 1112 |
| ScaI | AGTACT | 1 cut(s) | 730 |
| SchI | GAGTC | 2 cut(s) | 252, 802 |
| ScrFI | CCNGG | 4 cut(s) | 200, 214, 355, 639 |
| SduI | GDGCHC | 2 cut(s) | 128, 781 |
| SfaNI | GCATC | 2 cut(s) | 598, 834 |
| Sfr303I | CCGCGG | 1 cut(s) | 181 |
| SfuI | TTCGAA | 4 cut(s) | 446, 461, 823, 875 |
| SgrBI | CCGCGG | 1 cut(s) | 181 |
| SinI | GGWCC | 1 cut(s) | 1112 |
| SmlI | CTYRAG | 2 cut(s) | 562, 946 |
| SmoI | CTYRAG | 2 cut(s) | 562, 946 |
| Sse9I | AATT | 5 cut(s) | 502, 643, 819, 849, 969 |
| SsiI | CCGC | 6 cut(s) | 12, 56, 59, 178, 180, 1101 |
| SspMI | CTAG | 2 cut(s) | 174, 894 |
| SstI | GAGCTC | 2 cut(s) | 128, 781 |
| StyD4I | CCNGG | 4 cut(s) | 198, 212, 353, 637 |
| StyI | CCWWGG | 2 cut(s) | 475, 839 |
| TaaI | ACNGT | 5 cut(s) | 194, 307, 491, 581, 654 |
| TaiI | ACGT | 3 cut(s) | 25, 116, 303 |
| TaqI | TCGA | 4 cut(s) | 446, 461, 823, 875 |
| TaqII | GACCGA | 1 cut(s) | 136 |
| TasI | AATT | 5 cut(s) | 502, 643, 819, 849, 969 |
| TatI | WGTACW | 3 cut(s) | 714, 728, 1083 |
| TauI | GCSGC | 4 cut(s) | 58, 61, 180, 183 |
| TfiI | GAWTC | 4 cut(s) | 95, 140, 536, 680 |
| Tru1I | TTAA | 2 cut(s) | 318, 1136 |
| Tru9I | TTAA | 2 cut(s) | 318, 1136 |
| TscAI | CASTG | 2 cut(s) | 494, 871 |
| TseFI | GTSAC | 4 cut(s) | 100, 169, 301, 485 |
| TseI | GCWGC | 3 cut(s) | 165, 358, 634 |
| Tsp45I | GTSAC | 4 cut(s) | 100, 169, 301, 485 |
| TspDTI | ATGAA | 2 cut(s) | 588, 752 |
| TspGWI | ACGGA | 4 cut(s) | 15, 88, 1077, 1125 |
| TspRI | CASTG | 2 cut(s) | 494, 871 |
| Tth111I | GACNNNGTC | 1 cut(s) | 242 |
| VpaK11BI | GGWCC | 1 cut(s) | 1112 |
| VspI | ATTAAT | 1 cut(s) | 318 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 837 |
| XmnI | GAANNNNTTC | 2 cut(s) | 797, 819 |
| XspI | CTAG | 2 cut(s) | 174, 894 |
| ZraI | GACGTC | 1 cut(s) | 114 |
| ZrmI | AGTACT | 1 cut(s) | 730 |