Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Suf | PF05843 | 58 - 397 | 1e-29 | Suppressor of forked protein (Suf) |
| HAT_PRP39_N | PF23240 | 61 - 243 | 4.5e-17 | PRP39 N-terminal HAT repeat |
| HAT_Syf1_CNRKL1_N | PF23233 | 62 - 202 | 1.6e-06 | Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat |
| HAT_PRP39_C | PF23241 | 283 - 365 | 1.7e-11 | PRP39 C-terminal HAT repeat |
| HAT_PRP39_N | PF23240 | 306 - 412 | 3.2e-06 | PRP39 N-terminal HAT repeat |
| RRM_1 | PF00076 | 665 - 732 | 3.1e-14 | RNA recognition motif |
| Lsm_interact | PF05391 | 802 - 819 | 1.7e-07 | Lsm interaction motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 843, 1067 |
| AarI | CACCTGC | 1 cut(s) | 502 |
| Acc36I | ACCTGC | 1 cut(s) | 502 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2222 |
| AccI | GTMKAC | 1 cut(s) | 1971 |
| AccII | CGCG | 1 cut(s) | 2321 |
| AccIII | TCCGGA | 1 cut(s) | 362 |
| AciI | CCGC | 6 cut(s) | 84, 813, 1059, 1246, 1405, 2345 |
| AclI | AACGTT | 1 cut(s) | 1074 |
| AclWI | GGATC | 6 cut(s) | 464, 944, 2278, 2384, 2396, 2409 |
| AcoI | YGGCCR | 1 cut(s) | 1150 |
| AcsI | RAATTY | 6 cut(s) | 451, 657, 837, 929, 1577, 1747 |
| AcuI | CTGAAG | 7 cut(s) | 459, 582, 1487, 1755, 1773, 2029, 2102 |
| AfaI | GTAC | 3 cut(s) | 1226, 1480, 1929 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 324, 1109, 1286, 1557, 1589, 2222 |
| AflII | CTTAAG | 1 cut(s) | 1258 |
| AflIII | ACRYGT | 1 cut(s) | 2445 |
| AjnI | CCWGG | 3 cut(s) | 165, 1103, 1493 |
| Alw21I | GWGCWC | 5 cut(s) | 195, 535, 1296, 1851, 2302 |
| Alw26I | GTCTC | 6 cut(s) | 26, 57, 365, 415, 435, 2273 |
| Alw44I | GTGCAC | 1 cut(s) | 1847 |
| AlwI | GGATC | 6 cut(s) | 464, 944, 2278, 2384, 2396, 2409 |
| Ama87I | CYCGRG | 2 cut(s) | 368, 1443 |
| Aor13HI | TCCGGA | 1 cut(s) | 362 |
| AoxI | GGCC | 5 cut(s) | 1086, 1150, 1401, 1528, 1917 |
| ApaI | GGGCCC | 1 cut(s) | 1405 |
| ApaLI | GTGCAC | 1 cut(s) | 1847 |
| ApeKI | GCWGC | 8 cut(s) | 542, 777, 815, 1175, 1439, 2150, 2153, 2363 |
| ApoI | RAATTY | 6 cut(s) | 451, 657, 837, 929, 1577, 1747 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 25, 57 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2031 |
| AspLEI | GCGC | 3 cut(s) | 666, 1623, 2321 |
| AspS9I | GGNCC | 8 cut(s) | 365, 1086, 1401, 1402, 1528, 1548, 1710, 1917 |
| AsuC2I | CCSGG | 1 cut(s) | 1584 |
| AsuHPI | GGTGA | 3 cut(s) | 483, 1234, 1344 |
| AsuII | TTCGAA | 1 cut(s) | 2074 |
| AvaI | CYCGRG | 2 cut(s) | 368, 1443 |
| AvaII | GGWCC | 3 cut(s) | 365, 1548, 1710 |
| BaeGI | GKGCMC | 3 cut(s) | 1405, 1851, 2244 |
| BalI | TGGCCA | 1 cut(s) | 1152 |
| BamHI | GGATCC | 1 cut(s) | 2401 |
| BanII | GRGCYC | 3 cut(s) | 195, 362, 1405 |
| BauI | CACGAG | 1 cut(s) | 1850 |
| BbsI | GAAGAC | 2 cut(s) | 153, 1273 |
| Bbv12I | GWGCWC | 5 cut(s) | 195, 535, 1296, 1851, 2302 |
| BbvCI | CCTCAGC | 1 cut(s) | 272 |
| BbvI | GCAGC | 8 cut(s) | 554, 764, 827, 1187, 1426, 2137, 2165, 2350 |
| BccI | CCATC | 6 cut(s) | 434, 617, 742, 785, 1247, 1480 |
| BceAI | ACGGC | 2 cut(s) | 292, 1073 |
| BciT130I | CCWGG | 3 cut(s) | 167, 1105, 1495 |
| BciVI | GTATCC | 1 cut(s) | 1315 |
| BclI | TGATCA | 1 cut(s) | 784 |
| BcnI | CCSGG | 1 cut(s) | 1584 |
| BcoDI | GTCTC | 6 cut(s) | 26, 57, 365, 415, 435, 2273 |
| BfaI | CTAG | 8 cut(s) | 1083, 1409, 1499, 1955, 2114, 2183, 2274, 2295 |
| BfmI | CTRYAG | 6 cut(s) | 381, 540, 778, 999, 1567, 2151 |
| BfrI | CTTAAG | 1 cut(s) | 1258 |
| BfuAI | ACCTGC | 1 cut(s) | 502 |
| BfuI | GTATCC | 1 cut(s) | 1315 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1916 |
| BlpI | GCTNAGC | 1 cut(s) | 2195 |
| Bme1390I | CCNGG | 4 cut(s) | 167, 1105, 1495, 1584 |
| Bme18I | GGWCC | 3 cut(s) | 365, 1548, 1710 |
| BmeT110I | CYCGRG | 2 cut(s) | 368, 1443 |
| BmgT120I | GGNCC | 8 cut(s) | 365, 1086, 1401, 1402, 1528, 1548, 1710, 1917 |
| BmiI | GGNNCC | 8 cut(s) | 136, 361, 367, 760, 1403, 1918, 2349, 2403 |
| BmrFI | CCNGG | 4 cut(s) | 167, 1105, 1495, 1584 |
| BmsI | GCATC | 6 cut(s) | 70, 208, 1346, 1553, 1813, 2128 |
| BpiI | GAAGAC | 2 cut(s) | 153, 1273 |
| BpmI | CTGGAG | 4 cut(s) | 91, 188, 966, 1788 |
| Bpu10I | CCTNAGC | 3 cut(s) | 272, 339, 2006 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2195 |
| Bpu14I | TTCGAA | 1 cut(s) | 2074 |
| BpuMI | CCSGG | 1 cut(s) | 1584 |
| Bsa29I | ATCGAT | 1 cut(s) | 621 |
| BsaAI | YACGTR | 1 cut(s) | 1228 |
| BsaI | GGTCTC | 3 cut(s) | 26, 57, 2273 |
| BsaJI | CCNNGG | 8 cut(s) | 507, 1103, 1104, 1140, 1299, 1911, 2305, 2351 |
| BsaWI | WCCGGW | 1 cut(s) | 362 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 119, 149, 1625, 1655, 2049, 2079, 2163, 2193 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 324, 1109, 1286, 1557, 1589, 2222 |
| Bse1I | ACTGG | 6 cut(s) | 778, 1005, 1594, 2101, 2260, 2265 |
| Bse3DI | GCAATG | 3 cut(s) | 1205, 1518, 2199 |
| BseAI | TCCGGA | 1 cut(s) | 362 |
| BseBI | CCWGG | 3 cut(s) | 167, 1105, 1495 |
| BseCI | ATCGAT | 1 cut(s) | 621 |
| BseDI | CCNNGG | 8 cut(s) | 507, 1103, 1104, 1140, 1299, 1911, 2305, 2351 |
| BseGI | GGATG | 4 cut(s) | 85, 796, 1654, 1828 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 324, 1109, 1286, 1557, 1589, 2222 |
| BseMI | GCAATG | 3 cut(s) | 1205, 1518, 2199 |
| BseMII | CTCAG | 9 cut(s) | 236, 263, 650, 882, 981, 1152, 2145, 2186, 2411 |
| BseNI | ACTGG | 6 cut(s) | 778, 1005, 1594, 2101, 2260, 2265 |
| BseRI | GAGGAG | 2 cut(s) | 94, 2073 |
| BseSI | GKGCMC | 3 cut(s) | 1405, 1851, 2244 |
| BseXI | GCAGC | 8 cut(s) | 554, 764, 827, 1187, 1426, 2137, 2165, 2350 |
| BseYI | CCCAGC | 2 cut(s) | 156, 1194 |
| BsgI | GTGCAG | 3 cut(s) | 1683, 1889, 2349 |
| Bsh1236I | CGCG | 1 cut(s) | 2321 |
| BshFI | GGCC | 5 cut(s) | 1088, 1152, 1403, 1530, 1919 |
| BshVI | ATCGAT | 1 cut(s) | 621 |
| BsiHKAI | GWGCWC | 5 cut(s) | 195, 535, 1296, 1851, 2302 |
| BsiHKCI | CYCGRG | 2 cut(s) | 368, 1443 |
| BsiSI | CCGG | 3 cut(s) | 132, 363, 1584 |
| BslFI | GGGAC | 3 cut(s) | 640, 1177, 2124 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 324, 1109, 1286, 1557, 1589, 2222 |
| BsmAI | GTCTC | 6 cut(s) | 26, 57, 365, 415, 435, 2273 |
| BsmBI | CGTCTC | 1 cut(s) | 365 |
| BsmFI | GGGAC | 3 cut(s) | 640, 1177, 2124 |
| BsmI | GAATGC | 1 cut(s) | 666 |
| BsnI | GGCC | 5 cut(s) | 1088, 1152, 1403, 1530, 1919 |
| Bso31I | GGTCTC | 3 cut(s) | 26, 57, 2273 |
| BsoBI | CYCGRG | 2 cut(s) | 368, 1443 |
| Bsp119I | TTCGAA | 1 cut(s) | 2074 |
| Bsp120I | GGGCCC | 1 cut(s) | 1401 |
| Bsp1286I | GDGCHC | 8 cut(s) | 195, 362, 535, 1296, 1405, 1851, 2244, 2302 |
| Bsp13I | TCCGGA | 1 cut(s) | 362 |
| Bsp1407I | TGTACA | 1 cut(s) | 1927 |
| Bsp143I | GATC | 9 cut(s) | 469, 716, 784, 949, 1470, 2207, 2270, 2376, 2401 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2195 |
| BspACI | CCGC | 6 cut(s) | 84, 813, 1059, 1246, 1405, 2345 |
| BspANI | GGCC | 5 cut(s) | 1088, 1152, 1403, 1530, 1919 |
| BspCNI | CTCAG | 9 cut(s) | 237, 264, 649, 883, 982, 1153, 2144, 2187, 2410 |
| BspDI | ATCGAT | 1 cut(s) | 621 |
| BspEI | TCCGGA | 1 cut(s) | 362 |
| BspFNI | CGCG | 1 cut(s) | 2321 |
| BspHI | TCATGA | 1 cut(s) | 915 |
| BspLI | GGNNCC | 8 cut(s) | 136, 361, 367, 760, 1403, 1918, 2349, 2403 |
| BspMAI | CTGCAG | 3 cut(s) | 544, 782, 2155 |
| BspMI | ACCTGC | 1 cut(s) | 502 |
| BspPI | GGATC | 6 cut(s) | 464, 944, 2278, 2384, 2396, 2409 |
| BspT104I | TTCGAA | 1 cut(s) | 2074 |
| BspTI | CTTAAG | 1 cut(s) | 1258 |
| BspTNI | GGTCTC | 3 cut(s) | 26, 57, 2273 |
| BsrDI | GCAATG | 3 cut(s) | 1205, 1518, 2199 |
| BsrGI | TGTACA | 1 cut(s) | 1927 |
| BsrI | ACTGG | 6 cut(s) | 778, 1005, 1594, 2101, 2260, 2265 |
| BssECI | CCNNGG | 8 cut(s) | 507, 1103, 1104, 1140, 1299, 1911, 2305, 2351 |
| BssMI | GATC | 9 cut(s) | 469, 716, 784, 949, 1470, 2207, 2270, 2376, 2401 |
| BssNAI | GTATAC | 1 cut(s) | 1972 |
| BssSI | CACGAG | 1 cut(s) | 1850 |
| BssT1I | CCWWGG | 5 cut(s) | 507, 1140, 1299, 1911, 2305 |
| Bst1107I | GTATAC | 1 cut(s) | 1972 |
| Bst2BI | CACGAG | 1 cut(s) | 1850 |
| Bst2UI | CCWGG | 3 cut(s) | 167, 1105, 1495 |
| Bst4CI | ACNGT | 4 cut(s) | 37, 385, 1571, 1661 |
| Bst6I | CTCTTC | 2 cut(s) | 1731, 1769 |
| BstAFI | CTTAAG | 1 cut(s) | 1258 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 886, 2147 |
| BstAUI | TGTACA | 1 cut(s) | 1927 |
| BstBAI | YACGTR | 1 cut(s) | 1228 |
| BstBI | TTCGAA | 1 cut(s) | 2074 |
| BstC8I | GCNNGC | 9 cut(s) | 195, 279, 531, 603, 642, 1296, 1405, 1785, 2302 |
| BstF5I | GGATG | 4 cut(s) | 85, 796, 1654, 1828 |
| BstFNI | CGCG | 1 cut(s) | 2321 |
| BstHHI | GCGC | 3 cut(s) | 666, 1623, 2321 |
| BstKTI | GATC | 9 cut(s) | 472, 719, 787, 952, 1473, 2210, 2273, 2379, 2404 |
| BstMAI | GTCTC | 6 cut(s) | 26, 57, 365, 415, 435, 2273 |
| BstMBI | GATC | 9 cut(s) | 469, 716, 784, 949, 1470, 2207, 2270, 2376, 2401 |
| BstNI | CCWGG | 3 cut(s) | 167, 1105, 1495 |
| BstNSI | RCATGY | 2 cut(s) | 557, 2449 |
| BstSCI | CCNGG | 4 cut(s) | 165, 1103, 1493, 1582 |
| BstSFI | CTRYAG | 6 cut(s) | 381, 540, 778, 999, 1567, 2151 |
| BstSLI | GKGCMC | 3 cut(s) | 1405, 1851, 2244 |
| BstUI | CGCG | 1 cut(s) | 2321 |
| BstV1I | GCAGC | 8 cut(s) | 554, 764, 827, 1187, 1426, 2137, 2165, 2350 |
| BstV2I | GAAGAC | 2 cut(s) | 153, 1273 |
| BstX2I | RGATCY | 3 cut(s) | 949, 2270, 2401 |
| BstYI | RGATCY | 3 cut(s) | 949, 2270, 2401 |
| BstZ17I | GTATAC | 1 cut(s) | 1972 |
| Bsu15I | ATCGAT | 1 cut(s) | 621 |
| BsuI | GTATCC | 1 cut(s) | 1315 |
| BsuRI | GGCC | 5 cut(s) | 1088, 1152, 1403, 1530, 1919 |
| BsuTUI | ATCGAT | 1 cut(s) | 621 |
| BtsCI | GGATG | 4 cut(s) | 85, 796, 1654, 1828 |
| BtsI | GCAGTG | 2 cut(s) | 787, 1986 |
| BtsIMutI | CAGTG | 8 cut(s) | 771, 787, 1480, 1587, 1986, 2053, 2094, 2272 |
| BveI | ACCTGC | 1 cut(s) | 502 |
| Cac8I | GCNNGC | 9 cut(s) | 195, 279, 531, 603, 642, 1296, 1405, 1785, 2302 |
| CciI | TCATGA | 1 cut(s) | 915 |
| CfoI | GCGC | 3 cut(s) | 666, 1623, 2321 |
| Cfr13I | GGNCC | 8 cut(s) | 365, 1086, 1401, 1402, 1528, 1548, 1710, 1917 |
| ClaI | ATCGAT | 1 cut(s) | 621 |
| Csp6I | GTAC | 3 cut(s) | 1225, 1479, 1928 |
| CviQI | GTAC | 3 cut(s) | 1225, 1479, 1928 |
| DpnI | GATC | 9 cut(s) | 471, 718, 786, 951, 1472, 2209, 2272, 2378, 2403 |
| DpnII | GATC | 9 cut(s) | 469, 716, 784, 949, 1470, 2207, 2270, 2376, 2401 |
| EaeI | YGGCCR | 1 cut(s) | 1150 |
| Eam1104I | CTCTTC | 2 cut(s) | 1731, 1769 |
| EarI | CTCTTC | 2 cut(s) | 1731, 1769 |
| EciI | GGCGGA | 1 cut(s) | 1074 |
| Ecl136II | GAGCTC | 1 cut(s) | 193 |
| Eco130I | CCWWGG | 5 cut(s) | 507, 1140, 1299, 1911, 2305 |
| Eco24I | GRGCYC | 3 cut(s) | 195, 362, 1405 |
| Eco31I | GGTCTC | 3 cut(s) | 26, 57, 2273 |
| Eco47I | GGWCC | 3 cut(s) | 365, 1548, 1710 |
| Eco53kI | GAGCTC | 1 cut(s) | 193 |
| Eco57I | CTGAAG | 7 cut(s) | 459, 582, 1487, 1755, 1773, 2029, 2102 |
| Eco88I | CYCGRG | 2 cut(s) | 368, 1443 |
| EcoICRI | GAGCTC | 1 cut(s) | 193 |
| EcoRI | GAATTC | 1 cut(s) | 1747 |
| EcoRII | CCWGG | 3 cut(s) | 165, 1103, 1493 |
| EcoT14I | CCWWGG | 5 cut(s) | 507, 1140, 1299, 1911, 2305 |
| EcoT38I | GRGCYC | 3 cut(s) | 195, 362, 1405 |
| ErhI | CCWWGG | 5 cut(s) | 507, 1140, 1299, 1911, 2305 |
| Esp3I | CGTCTC | 1 cut(s) | 365 |
| FaqI | GGGAC | 3 cut(s) | 640, 1177, 2124 |
| FauI | CCCGC | 2 cut(s) | 1253, 1412 |
| FauNDI | CATATG | 1 cut(s) | 2119 |
| FbaI | TGATCA | 1 cut(s) | 784 |
| FblI | GTMKAC | 1 cut(s) | 1971 |
| FokI | GGATG | 4 cut(s) | 92, 803, 1661, 1835 |
| FriOI | GRGCYC | 3 cut(s) | 195, 362, 1405 |
| FspBI | CTAG | 8 cut(s) | 1083, 1409, 1499, 1955, 2114, 2183, 2274, 2295 |
| GlaI | GCGC | 3 cut(s) | 665, 1622, 2320 |
| GsaI | CCCAGC | 2 cut(s) | 160, 1198 |
| GsuI | CTGGAG | 4 cut(s) | 91, 188, 966, 1788 |
| HaeIII | GGCC | 5 cut(s) | 1088, 1152, 1403, 1530, 1919 |
| HapII | CCGG | 3 cut(s) | 132, 363, 1584 |
| HhaI | GCGC | 3 cut(s) | 666, 1623, 2321 |
| Hin6I | GCGC | 3 cut(s) | 664, 1621, 2319 |
| HinP1I | GCGC | 3 cut(s) | 664, 1621, 2319 |
| HincII | GTYRAC | 2 cut(s) | 312, 769 |
| HindII | GTYRAC | 2 cut(s) | 312, 769 |
| HindIII | AAGCTT | 3 cut(s) | 392, 582, 1785 |
| HinfI | GANTC | 9 cut(s) | 116, 122, 128, 172, 241, 408, 485, 1523, 1721 |
| HpaI | GTTAAC | 1 cut(s) | 312 |
| HpaII | CCGG | 3 cut(s) | 132, 363, 1584 |
| HphI | GGTGA | 3 cut(s) | 483, 1234, 1344 |
| Hpy166II | GTNNAC | 7 cut(s) | 312, 769, 1463, 1849, 1972, 2094, 2125 |
| Hpy8I | GTNNAC | 7 cut(s) | 312, 769, 1463, 1849, 1972, 2094, 2125 |
| HpyAV | CCTTC | 7 cut(s) | 483, 557, 1045, 1280, 1849, 1886, 2077 |
| HpyCH4III | ACNGT | 4 cut(s) | 37, 385, 1571, 1661 |
| HpyCH4IV | ACGT | 6 cut(s) | 374, 685, 1074, 1227, 1384, 1669 |
| HpySE526I | ACGT | 6 cut(s) | 374, 685, 1074, 1227, 1384, 1669 |
| HspAI | GCGC | 3 cut(s) | 664, 1621, 2319 |
| Kpn2I | TCCGGA | 1 cut(s) | 362 |
| Ksp22I | TGATCA | 1 cut(s) | 784 |
| KspAI | GTTAAC | 1 cut(s) | 312 |
| Kzo9I | GATC | 9 cut(s) | 469, 716, 784, 949, 1470, 2207, 2270, 2376, 2401 |
| LmnI | GCTCC | 5 cut(s) | 116, 140, 365, 1144, 1684 |
| Lsp1109I | GCAGC | 8 cut(s) | 554, 764, 827, 1187, 1426, 2137, 2165, 2350 |
| LweI | GCATC | 6 cut(s) | 70, 208, 1346, 1553, 1813, 2128 |
| MaeI | CTAG | 8 cut(s) | 1083, 1409, 1499, 1955, 2114, 2183, 2274, 2295 |
| MaeII | ACGT | 6 cut(s) | 374, 685, 1074, 1227, 1384, 1669 |
| MaeIII | GTNAC | 2 cut(s) | 37, 1380 |
| MalI | GATC | 9 cut(s) | 471, 718, 786, 951, 1472, 2209, 2272, 2378, 2403 |
| MboI | GATC | 9 cut(s) | 469, 716, 784, 949, 1470, 2207, 2270, 2376, 2401 |
| MflI | RGATCY | 3 cut(s) | 949, 2270, 2401 |
| MhlI | GDGCHC | 8 cut(s) | 195, 362, 535, 1296, 1405, 1851, 2244, 2302 |
| MlsI | TGGCCA | 1 cut(s) | 1152 |
| MluNI | TGGCCA | 1 cut(s) | 1152 |
| MlyI | GAGTC | 2 cut(s) | 122, 417 |
| MmeI | TCCRAC | 7 cut(s) | 150, 234, 706, 1090, 1626, 2035, 2354 |
| Mox20I | TGGCCA | 1 cut(s) | 1152 |
| MroI | TCCGGA | 1 cut(s) | 362 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2031 |
| MscI | TGGCCA | 1 cut(s) | 1152 |
| MseI | TTAA | 8 cut(s) | 237, 311, 449, 708, 1259, 1706, 2012, 2325 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1536 |
| Msp20I | TGGCCA | 1 cut(s) | 1152 |
| MspA1I | CMGCKG | 3 cut(s) | 86, 545, 1178 |
| MspCI | CTTAAG | 1 cut(s) | 1258 |
| MspI | CCGG | 3 cut(s) | 132, 363, 1584 |
| MspR9I | CCNGG | 4 cut(s) | 167, 1105, 1495, 1584 |
| Mva1269I | GAATGC | 1 cut(s) | 666 |
| MvaI | CCWGG | 3 cut(s) | 167, 1105, 1495 |
| MvnI | CGCG | 1 cut(s) | 2321 |
| NciI | CCSGG | 1 cut(s) | 1584 |
| NdeI | CATATG | 1 cut(s) | 2119 |
| NdeII | GATC | 9 cut(s) | 469, 716, 784, 949, 1470, 2207, 2270, 2376, 2401 |
| NlaIV | GGNNCC | 8 cut(s) | 136, 361, 367, 760, 1403, 1918, 2349, 2403 |
| NmeAIII | GCCGAG | 1 cut(s) | 214 |
| NmuCI | GTSAC | 1 cut(s) | 37 |
| NspI | RCATGY | 2 cut(s) | 557, 2449 |
| NspV | TTCGAA | 1 cut(s) | 2074 |
| PagI | TCATGA | 1 cut(s) | 915 |
| PaqCI | CACCTGC | 1 cut(s) | 502 |
| PasI | CCCWGGG | 1 cut(s) | 1104 |
| PciI | ACATGT | 1 cut(s) | 2445 |
| PctI | GAATGC | 1 cut(s) | 666 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2031 |
| PfeI | GAWTC | 7 cut(s) | 116, 122, 172, 241, 485, 1523, 1721 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2222 |
| PleI | GAGTC | 2 cut(s) | 122, 416 |
| PpsI | GAGTC | 2 cut(s) | 122, 416 |
| Ppu21I | YACGTR | 1 cut(s) | 1228 |
| PscI | ACATGT | 1 cut(s) | 2445 |
| PsiI | TTATAA | 2 cut(s) | 843, 1067 |
| Psp124BI | GAGCTC | 1 cut(s) | 195 |
| Psp1406I | AACGTT | 1 cut(s) | 1074 |
| Psp6I | CCWGG | 3 cut(s) | 165, 1103, 1493 |
| PspFI | CCCAGC | 2 cut(s) | 156, 1194 |
| PspGI | CCWGG | 3 cut(s) | 165, 1103, 1493 |
| PspN4I | GGNNCC | 8 cut(s) | 136, 361, 367, 760, 1403, 1918, 2349, 2403 |
| PspOMI | GGGCCC | 1 cut(s) | 1401 |
| PspPI | GGNCC | 8 cut(s) | 365, 1086, 1401, 1402, 1528, 1548, 1710, 1917 |
| PstI | CTGCAG | 3 cut(s) | 544, 782, 2155 |
| PsuI | RGATCY | 3 cut(s) | 949, 2270, 2401 |
| PvuII | CAGCTG | 2 cut(s) | 545, 1178 |
| RsaI | GTAC | 3 cut(s) | 1226, 1480, 1929 |
| RsaNI | GTAC | 3 cut(s) | 1225, 1479, 1928 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1536 |
| SacI | GAGCTC | 1 cut(s) | 195 |
| SaqAI | TTAA | 8 cut(s) | 237, 311, 449, 708, 1259, 1706, 2012, 2325 |
| Sau3AI | GATC | 9 cut(s) | 469, 716, 784, 949, 1470, 2207, 2270, 2376, 2401 |
| Sau96I | GGNCC | 8 cut(s) | 365, 1086, 1401, 1402, 1528, 1548, 1710, 1917 |
| SchI | GAGTC | 2 cut(s) | 122, 417 |
| ScrFI | CCNGG | 4 cut(s) | 167, 1105, 1495, 1584 |
| SduI | GDGCHC | 8 cut(s) | 195, 362, 535, 1296, 1405, 1851, 2244, 2302 |
| SfaNI | GCATC | 6 cut(s) | 70, 208, 1346, 1553, 1813, 2128 |
| SfcI | CTRYAG | 6 cut(s) | 381, 540, 778, 999, 1567, 2151 |
| SfuI | TTCGAA | 1 cut(s) | 2074 |
| SinI | GGWCC | 3 cut(s) | 365, 1548, 1710 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1536 |
| SmlI | CTYRAG | 1 cut(s) | 1258 |
| SmoI | CTYRAG | 1 cut(s) | 1258 |
| SsiI | CCGC | 6 cut(s) | 84, 813, 1059, 1246, 1405, 2345 |
| SspMI | CTAG | 8 cut(s) | 1083, 1409, 1499, 1955, 2114, 2183, 2274, 2295 |
| SstI | GAGCTC | 1 cut(s) | 195 |
| StyD4I | CCNGG | 4 cut(s) | 165, 1103, 1493, 1582 |
| StyI | CCWWGG | 5 cut(s) | 507, 1140, 1299, 1911, 2305 |
| TaaI | ACNGT | 4 cut(s) | 37, 385, 1571, 1661 |
| TaiI | ACGT | 6 cut(s) | 377, 688, 1077, 1230, 1387, 1672 |
| TaqI | TCGA | 5 cut(s) | 183, 460, 621, 1656, 2074 |
| TaqII | GACCGA | 1 cut(s) | 1536 |
| TatI | WGTACW | 1 cut(s) | 1927 |
| TauI | GCSGC | 2 cut(s) | 86, 815 |
| TfiI | GAWTC | 7 cut(s) | 116, 122, 172, 241, 485, 1523, 1721 |
| Tru1I | TTAA | 8 cut(s) | 237, 311, 449, 708, 1259, 1706, 2012, 2325 |
| Tru9I | TTAA | 8 cut(s) | 237, 311, 449, 708, 1259, 1706, 2012, 2325 |
| TscAI | CASTG | 8 cut(s) | 778, 787, 1480, 1594, 1993, 2053, 2101, 2272 |
| TseFI | GTSAC | 1 cut(s) | 37 |
| TseI | GCWGC | 8 cut(s) | 542, 777, 815, 1175, 1439, 2150, 2153, 2363 |
| Tsp45I | GTSAC | 1 cut(s) | 37 |
| TspRI | CASTG | 8 cut(s) | 778, 787, 1480, 1594, 1993, 2053, 2101, 2272 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2222 |
| Vha464I | CTTAAG | 1 cut(s) | 1258 |
| VneI | GTGCAC | 1 cut(s) | 1847 |
| VpaK11BI | GGWCC | 3 cut(s) | 365, 1548, 1710 |
| XapI | RAATTY | 6 cut(s) | 451, 657, 837, 929, 1577, 1747 |
| XbaI | TCTAGA | 1 cut(s) | 1954 |
| XceI | RCATGY | 2 cut(s) | 557, 2449 |
| XmiI | GTMKAC | 1 cut(s) | 1971 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2031 |
| XspI | CTAG | 8 cut(s) | 1083, 1409, 1499, 1955, 2114, 2183, 2274, 2295 |