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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 856 |
| AciI | CCGC | 3 cut(s) | 213, 308, 321 |
| AclWI | GGATC | 2 cut(s) | 421, 659 |
| AcoI | YGGCCR | 2 cut(s) | 583, 607 |
| AcsI | RAATTY | 1 cut(s) | 729 |
| AcuI | CTGAAG | 1 cut(s) | 104 |
| AdeI | CACNNNGTG | 1 cut(s) | 147 |
| AfaI | GTAC | 1 cut(s) | 37 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 616 |
| AgsI | TTSAA | 5 cut(s) | 615, 625, 685, 749, 889 |
| AjnI | CCWGG | 1 cut(s) | 803 |
| AluBI | AGCT | 2 cut(s) | 231, 839 |
| AluI | AGCT | 2 cut(s) | 231, 839 |
| Alw26I | GTCTC | 2 cut(s) | 525, 562 |
| AlwI | GGATC | 2 cut(s) | 421, 659 |
| AoxI | GGCC | 3 cut(s) | 583, 607, 806 |
| ApeKI | GCWGC | 1 cut(s) | 436 |
| ApoI | RAATTY | 1 cut(s) | 729 |
| AspS9I | GGNCC | 1 cut(s) | 740 |
| AsuC2I | CCSGG | 1 cut(s) | 264 |
| AsuHPI | GGTGA | 2 cut(s) | 338, 825 |
| AsuII | TTCGAA | 1 cut(s) | 726 |
| AvaII | GGWCC | 1 cut(s) | 740 |
| BaeGI | GKGCMC | 1 cut(s) | 143 |
| BalI | TGGCCA | 2 cut(s) | 585, 609 |
| BanI | GGYRCC | 1 cut(s) | 856 |
| BbsI | GAAGAC | 2 cut(s) | 116, 692 |
| BbvI | GCAGC | 1 cut(s) | 423 |
| BccI | CCATC | 1 cut(s) | 730 |
| BceAI | ACGGC | 1 cut(s) | 449 |
| BciT130I | CCWGG | 1 cut(s) | 805 |
| BcnI | CCSGG | 1 cut(s) | 264 |
| BcoDI | GTCTC | 2 cut(s) | 525, 562 |
| BisI | GCNGC | 1 cut(s) | 437 |
| BlpI | GCTNAGC | 1 cut(s) | 873 |
| BlsI | GCNGC | 1 cut(s) | 438 |
| Bme1390I | CCNGG | 2 cut(s) | 264, 805 |
| Bme18I | GGWCC | 1 cut(s) | 740 |
| BmgT120I | GGNCC | 1 cut(s) | 740 |
| BmiI | GGNNCC | 2 cut(s) | 741, 858 |
| BmrFI | CCNGG | 2 cut(s) | 264, 805 |
| BmsI | GCATC | 1 cut(s) | 319 |
| BpiI | GAAGAC | 2 cut(s) | 116, 692 |
| BpmI | CTGGAG | 1 cut(s) | 787 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 873 |
| Bpu14I | TTCGAA | 1 cut(s) | 726 |
| BpuMI | CCSGG | 1 cut(s) | 264 |
| BsaJI | CCNNGG | 2 cut(s) | 263, 316 |
| BsaWI | WCCGGW | 2 cut(s) | 353, 414 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 616 |
| Bse1I | ACTGG | 3 cut(s) | 83, 482, 860 |
| Bse3DI | GCAATG | 1 cut(s) | 345 |
| BseBI | CCWGG | 1 cut(s) | 805 |
| BseDI | CCNNGG | 2 cut(s) | 263, 316 |
| BseGI | GGATG | 1 cut(s) | 787 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 616 |
| BseMI | GCAATG | 1 cut(s) | 345 |
| BseMII | CTCAG | 2 cut(s) | 135, 887 |
| BseNI | ACTGG | 3 cut(s) | 83, 482, 860 |
| BseRI | GAGGAG | 2 cut(s) | 62, 499 |
| BseSI | GKGCMC | 1 cut(s) | 143 |
| BseXI | GCAGC | 1 cut(s) | 423 |
| BshFI | GGCC | 3 cut(s) | 585, 609, 808 |
| BshNI | GGYRCC | 1 cut(s) | 856 |
| BsiSI | CCGG | 3 cut(s) | 263, 354, 415 |
| BslFI | GGGAC | 3 cut(s) | 78, 451, 753 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 616 |
| BsmAI | GTCTC | 2 cut(s) | 525, 562 |
| BsmFI | GGGAC | 3 cut(s) | 78, 451, 753 |
| BsnI | GGCC | 3 cut(s) | 585, 609, 808 |
| Bsp119I | TTCGAA | 1 cut(s) | 726 |
| Bsp1286I | GDGCHC | 1 cut(s) | 143 |
| Bsp143I | GATC | 2 cut(s) | 426, 664 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 873 |
| Bsp19I | CCATGG | 1 cut(s) | 316 |
| BspACI | CCGC | 3 cut(s) | 213, 308, 321 |
| BspANI | GGCC | 3 cut(s) | 585, 609, 808 |
| BspCNI | CTCAG | 2 cut(s) | 136, 886 |
| BspHI | TCATGA | 1 cut(s) | 514 |
| BspLI | GGNNCC | 2 cut(s) | 741, 858 |
| BspPI | GGATC | 2 cut(s) | 421, 659 |
| BspQI | GCTCTTC | 1 cut(s) | 238 |
| BspT104I | TTCGAA | 1 cut(s) | 726 |
| BspT107I | GGYRCC | 1 cut(s) | 856 |
| BsrDI | GCAATG | 1 cut(s) | 345 |
| BsrI | ACTGG | 3 cut(s) | 83, 482, 860 |
| BssECI | CCNNGG | 2 cut(s) | 263, 316 |
| BssMI | GATC | 2 cut(s) | 426, 664 |
| BssT1I | CCWWGG | 1 cut(s) | 316 |
| Bst2UI | CCWGG | 1 cut(s) | 805 |
| Bst4CI | ACNGT | 4 cut(s) | 387, 407, 568, 634 |
| Bst6I | CTCTTC | 5 cut(s) | 80, 238, 583, 675, 750 |
| BstBI | TTCGAA | 1 cut(s) | 726 |
| BstC8I | GCNNGC | 1 cut(s) | 607 |
| BstDEI | CTNAG | 2 cut(s) | 144, 873 |
| BstDSI | CCRYGG | 1 cut(s) | 316 |
| BstEII | GGTNACC | 1 cut(s) | 387 |
| BstF5I | GGATG | 1 cut(s) | 787 |
| BstKTI | GATC | 2 cut(s) | 429, 667 |
| BstMAI | GTCTC | 2 cut(s) | 525, 562 |
| BstMBI | GATC | 2 cut(s) | 426, 664 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 626, 635 |
| BstNI | CCWGG | 1 cut(s) | 805 |
| BstNSI | RCATGY | 1 cut(s) | 716 |
| BstPI | GGTNACC | 1 cut(s) | 387 |
| BstSCI | CCNGG | 2 cut(s) | 262, 803 |
| BstSLI | GKGCMC | 1 cut(s) | 143 |
| BstV1I | GCAGC | 1 cut(s) | 423 |
| BstV2I | GAAGAC | 2 cut(s) | 116, 692 |
| BsuRI | GGCC | 3 cut(s) | 585, 609, 808 |
| BtgI | CCRYGG | 1 cut(s) | 316 |
| BtsCI | GGATG | 1 cut(s) | 787 |
| BtsIMutI | CAGTG | 2 cut(s) | 141, 867 |
| Cac8I | GCNNGC | 1 cut(s) | 607 |
| CciI | TCATGA | 1 cut(s) | 514 |
| Cfr13I | GGNCC | 1 cut(s) | 740 |
| Csp6I | GTAC | 1 cut(s) | 36 |
| CviAII | CATG | 6 cut(s) | 30, 317, 515, 534, 587, 713 |
| CviQI | GTAC | 1 cut(s) | 36 |
| DdeI | CTNAG | 2 cut(s) | 144, 873 |
| DpnI | GATC | 2 cut(s) | 428, 666 |
| DpnII | GATC | 2 cut(s) | 426, 664 |
| DraIII | CACNNNGTG | 1 cut(s) | 147 |
| EaeI | YGGCCR | 2 cut(s) | 583, 607 |
| Eam1104I | CTCTTC | 5 cut(s) | 80, 238, 583, 675, 750 |
| EarI | CTCTTC | 5 cut(s) | 80, 238, 583, 675, 750 |
| EciI | GGCGGA | 1 cut(s) | 336 |
| Eco130I | CCWWGG | 1 cut(s) | 316 |
| Eco147I | AGGCCT | 1 cut(s) | 808 |
| Eco47I | GGWCC | 1 cut(s) | 740 |
| Eco57I | CTGAAG | 1 cut(s) | 104 |
| Eco91I | GGTNACC | 1 cut(s) | 387 |
| EcoO109I | RGGNCCY | 1 cut(s) | 740 |
| EcoO65I | GGTNACC | 1 cut(s) | 387 |
| EcoRII | CCWGG | 1 cut(s) | 803 |
| EcoT14I | CCWWGG | 1 cut(s) | 316 |
| ErhI | CCWWGG | 1 cut(s) | 316 |
| FaeI | CATG | 6 cut(s) | 33, 320, 518, 537, 590, 716 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 632, 664 |
| FaqI | GGGAC | 3 cut(s) | 78, 451, 753 |
| FatI | CATG | 6 cut(s) | 29, 316, 514, 533, 586, 712 |
| FauI | CCCGC | 1 cut(s) | 206 |
| FauNDI | CATATG | 1 cut(s) | 775 |
| Fnu4HI | GCNGC | 1 cut(s) | 437 |
| FokI | GGATG | 1 cut(s) | 794 |
| Fsp4HI | GCNGC | 1 cut(s) | 437 |
| GluI | GCNGC | 1 cut(s) | 437 |
| GsuI | CTGGAG | 1 cut(s) | 787 |
| HaeIII | GGCC | 3 cut(s) | 585, 609, 808 |
| HapII | CCGG | 3 cut(s) | 263, 354, 415 |
| Hin1II | CATG | 6 cut(s) | 33, 320, 518, 537, 590, 716 |
| HincII | GTYRAC | 2 cut(s) | 76, 592 |
| HindII | GTYRAC | 2 cut(s) | 76, 592 |
| HinfI | GANTC | 3 cut(s) | 362, 518, 880 |
| HpaI | GTTAAC | 1 cut(s) | 592 |
| HpaII | CCGG | 3 cut(s) | 263, 354, 415 |
| HphI | GGTGA | 2 cut(s) | 338, 825 |
| Hpy166II | GTNNAC | 4 cut(s) | 36, 76, 383, 592 |
| Hpy188I | TCNGA | 1 cut(s) | 196 |
| Hpy188III | TCNNGA | 3 cut(s) | 252, 515, 749 |
| Hpy8I | GTNNAC | 4 cut(s) | 36, 76, 383, 592 |
| HpyAV | CCTTC | 4 cut(s) | 154, 634, 733, 847 |
| HpyCH4III | ACNGT | 4 cut(s) | 387, 407, 568, 634 |
| HpyCH4V | TGCA | 4 cut(s) | 29, 350, 702, 765 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 626, 635 |
| HpyF3I | CTNAG | 2 cut(s) | 144, 873 |
| Hsp92II | CATG | 6 cut(s) | 33, 320, 518, 537, 590, 716 |
| KspAI | GTTAAC | 1 cut(s) | 592 |
| Kzo9I | GATC | 2 cut(s) | 426, 664 |
| LguI | GCTCTTC | 1 cut(s) | 238 |
| LmnI | GCTCC | 1 cut(s) | 417 |
| Lsp1109I | GCAGC | 1 cut(s) | 423 |
| LweI | GCATC | 1 cut(s) | 319 |
| MaeIII | GTNAC | 4 cut(s) | 341, 387, 397, 407 |
| MalI | GATC | 2 cut(s) | 428, 666 |
| MboI | GATC | 2 cut(s) | 426, 664 |
| MfeI | CAATTG | 1 cut(s) | 552 |
| MhlI | GDGCHC | 1 cut(s) | 143 |
| MlsI | TGGCCA | 2 cut(s) | 585, 609 |
| MluCI | AATT | 9 cut(s) | 9, 280, 287, 529, 552, 675, 729, 760, 766 |
| MluNI | TGGCCA | 2 cut(s) | 585, 609 |
| MlyI | GAGTC | 2 cut(s) | 527, 874 |
| MmeI | TCCRAC | 1 cut(s) | 132 |
| Mox20I | TGGCCA | 2 cut(s) | 585, 609 |
| MscI | TGGCCA | 2 cut(s) | 585, 609 |
| MseI | TTAA | 2 cut(s) | 591, 596 |
| Msp20I | TGGCCA | 2 cut(s) | 585, 609 |
| MspI | CCGG | 3 cut(s) | 263, 354, 415 |
| MspR9I | CCNGG | 2 cut(s) | 264, 805 |
| MunI | CAATTG | 1 cut(s) | 552 |
| MvaI | CCWGG | 1 cut(s) | 805 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 626, 635 |
| NciI | CCSGG | 1 cut(s) | 264 |
| NcoI | CCATGG | 1 cut(s) | 316 |
| NdeI | CATATG | 1 cut(s) | 775 |
| NdeII | GATC | 2 cut(s) | 426, 664 |
| NlaIII | CATG | 6 cut(s) | 33, 320, 518, 537, 590, 716 |
| NlaIV | GGNNCC | 2 cut(s) | 741, 858 |
| NmuCI | GTSAC | 1 cut(s) | 341 |
| NspI | RCATGY | 1 cut(s) | 716 |
| NspV | TTCGAA | 1 cut(s) | 726 |
| PagI | TCATGA | 1 cut(s) | 514 |
| PceI | AGGCCT | 1 cut(s) | 808 |
| PciSI | GCTCTTC | 1 cut(s) | 238 |
| PfeI | GAWTC | 1 cut(s) | 362 |
| PkrI | GCNGC | 1 cut(s) | 438 |
| PleI | GAGTC | 2 cut(s) | 526, 874 |
| PpsI | GAGTC | 2 cut(s) | 526, 874 |
| PpuMI | RGGWCCY | 1 cut(s) | 740 |
| Psp5II | RGGWCCY | 1 cut(s) | 740 |
| Psp6I | CCWGG | 1 cut(s) | 803 |
| PspEI | GGTNACC | 1 cut(s) | 387 |
| PspGI | CCWGG | 1 cut(s) | 803 |
| PspN4I | GGNNCC | 2 cut(s) | 741, 858 |
| PspPI | GGNCC | 1 cut(s) | 740 |
| PspPPI | RGGWCCY | 1 cut(s) | 740 |
| RsaI | GTAC | 1 cut(s) | 37 |
| RsaNI | GTAC | 1 cut(s) | 36 |
| SapI | GCTCTTC | 1 cut(s) | 238 |
| SaqAI | TTAA | 2 cut(s) | 591, 596 |
| SatI | GCNGC | 1 cut(s) | 437 |
| Sau3AI | GATC | 2 cut(s) | 426, 664 |
| Sau96I | GGNCC | 1 cut(s) | 740 |
| SchI | GAGTC | 2 cut(s) | 527, 874 |
| ScrFI | CCNGG | 2 cut(s) | 264, 805 |
| SduI | GDGCHC | 1 cut(s) | 143 |
| SetI | ASST | 6 cut(s) | 233, 328, 700, 745, 803, 841 |
| SfaNI | GCATC | 1 cut(s) | 319 |
| SfuI | TTCGAA | 1 cut(s) | 726 |
| SinI | GGWCC | 1 cut(s) | 740 |
| Sse9I | AATT | 9 cut(s) | 9, 280, 287, 529, 552, 675, 729, 760, 766 |
| SseBI | AGGCCT | 1 cut(s) | 808 |
| SsiI | CCGC | 3 cut(s) | 213, 308, 321 |
| StuI | AGGCCT | 1 cut(s) | 808 |
| StyD4I | CCNGG | 2 cut(s) | 262, 803 |
| StyI | CCWWGG | 1 cut(s) | 316 |
| TaaI | ACNGT | 4 cut(s) | 387, 407, 568, 634 |
| TaqI | TCGA | 2 cut(s) | 726, 734 |
| TasI | AATT | 9 cut(s) | 9, 280, 287, 529, 552, 675, 729, 760, 766 |
| TatI | WGTACW | 1 cut(s) | 35 |
| TfiI | GAWTC | 1 cut(s) | 362 |
| Tru1I | TTAA | 2 cut(s) | 591, 596 |
| Tru9I | TTAA | 2 cut(s) | 591, 596 |
| TscAI | CASTG | 2 cut(s) | 148, 867 |
| TseFI | GTSAC | 1 cut(s) | 341 |
| TseI | GCWGC | 1 cut(s) | 436 |
| Tsp45I | GTSAC | 1 cut(s) | 341 |
| TspDTI | ATGAA | 3 cut(s) | 365, 522, 762 |
| TspGWI | ACGGA | 1 cut(s) | 128 |
| TspRI | CASTG | 2 cut(s) | 148, 867 |
| VpaK11BI | GGWCC | 1 cut(s) | 740 |
| XapI | RAATTY | 1 cut(s) | 729 |
| XceI | RCATGY | 1 cut(s) | 716 |