FvH4_5g37180

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000022
Physical Location & Seq
Reverse (-)
27244447 .. 27250294
5848 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37180.t1

Sequence Viewer

Length: 3645 bp
ATGGACGACATCATCTCAGGAATTTCCAAGAATCTTGCAATTGTGGATGAGGAAGAATTGAACATCGTCCAAGTCGAAGATCCGAAGGAGATTGCCTCAGGGAGATATTGGCTTGTCGGCAAACTTTTAACCAATAAGTCTTATTGCTTTGAGGCCCTCCGAAATACTCTGAAACGTATCTGGTTGGTGAAGGGAGAGGTGATAGTTTTCAAGTGGGAAGACTCGGATCGGATCTTGTTCTCTTTCGAATCTGATAAGGATAGAGGGAGGGTGTTGAGAGGAAGTCCTTGGACTTTTGACAACGCTCTAGTATTACTCGCTGCTTTGGATGGAGCAAGTAATCCCAATTCAGTTCCATTGGAGACTCAAGCGTTTTGGATTAGGGTTCGAGGTATTGAGCCTGAGTTTATAACGCCAAAGCTTGCAGAGAGAACTGGTAGACAACTGGGCATCTTCTATCCCATTGGAGGTGGTTTTAGTGAAGATGGCAGTGGAAGATTCCTCCGAATAAGAGTAGGTTTGTCTGTCACAAAGCCACTTCAACGATGGTTGAAGCTCTCAATTGCTGGACGTTCTTTAACAGAGAAACTACAGCTGGAATATGAACATTTGCCTTATCTATGCTTTTTTTGTGTGAGATTAGACCATGTTAGCTCTGGCTGTGTACTCCATAAGGAGGGTGTGATCCCAGATGAGCGGTTTGGTAGATGGAAAACGCTGGCTAAGAATGTTTTTTCCATAGACCTAGTTTGTCAGGAACAGGGAAGGCTTTTTGGTTTAATTCCCAAACCAAAAGGATGGTCAATCAGCGTGTCGGAAAATGAGTTGTTTGATAGGGTCCGAACGCGAGAAGATTTTGAGAATGCTCATAGAGGTCCGGGAACGGAGATGGAAGTGGATAAACCGGCGGAGGATGCTCAGGTGGAGCCATTGGCCAAGCACCGCCGTGCGGGACAGACAACGGTGATGGAGGTTGATCCGGGAAAATCTCAACTGAGCGATTCTCGGGATCTAATTGAGATTGATTTTCTAAAGCGTGTTATAGGAGACGAGGCGTTGGCACAGGTAGAGACGTCAATCCCTAACTCTAATTTGGGAAATCCATATTCAAACTCTCCTGCTAATTTTGTAGGCAAGAATTCTGAGAAAGGTTTGTCTAGAGAAGTGGGGTCTGCCAGCGATGTCAGGAAGAAAGAAAGAGGGAGTGGGAAGAGAGGAGGGGAGCAAAAAGGATGCAGAGGCCATGGTCAGGTGTCCTCGATGCTGGATAAGGGGAAGGCAATTTCGACGGCAGAAGAGAAGGAGATGGCGAAAGGGACTGAGGTAGGGAAGGGAGATAAAGCTAGGAGAGGCCGCAAGGGCCTTGTTGTGGGTGGTAGGAGCCGCAACAAGGCTACAAAATCATCCTCCTCTGCTAAATCGGTCTCGACAAAGAAGTCGAAGGCAGAAATGACCGATATTTGCTATGATTTAGGATTTGGTGGTTGTTGTGTAGTGGGTAAGGTAGGTCGAAGTAGTGGAGGTTTGGCTATGTTTTGGAGGAAGGGTTTAGCGGTGCGACCTCTGGGATCTTCAATGGGACATATAGATGTGGAAGTACAACTTGATTCAGGACTAGTTCGTATTTCAGGGTTCTATGGTAATCCAGAGACTAGTAATAGATGGGCTTCATGGGAATTGCTACGCAGGATTGCAGCTTCGGTTGAAGGGCCTTGGATCACTTTTGGGGACTTCAATGAATTGAGAGATGCAAATGAGAAAAAAGGTGGTTCAGACCGAATAGAGTCCCAGATGCAAAAGTTTGTCGAAGCAATTGATGATTATGGACTCCAGGATGTGGAGGTCTCAGGAGAGTCAGACCACATACCCATTCTCATTTATACTGATGGCTTGCCGACTAAGAAATGCGACAAGAGGCAGGAGCATAGGAGTGAAGGGGATCAAAATACCAAGTTCTTCCACGGTTATGCAAAAGCGAGAGGTCGAAGGAATAGAGTTGGAAGAATTATGAATGCTGCCGGGGAATGGCAAGAGACATCTGAGGGTATTAAAGAGGCTTTTATTAGTTATTTCCAGAATATTTTTGCTTCAGAAGGGTGTAACCATATGGAGCTGGTTCTGGATGCTATTCCTCAGAAGATATCAGATGCTATGAACAATCGTTTATGTCAACCAGTGTTTCATGCTAAATATGTACGCAACGGTGATTGGGCAGCTACAGGAGTGGGGGTAAAGCCTTCCTTTGTCTGGCCGGGATTGGTATGGGGGAAAGATCTTATGTGTGCTGGTATAAGGTGGAGGATAGGTTCTGGAGACCTAGTTAAAATTTGGGGAGATAAATGGCTTCCAACTCCTTGGTCCTTTAAGGTGGTAACTCCTTGCTTTATGGATCCAAATGCAAGGGTCAGCCAGCTTATGAGCCAACCAGGTATGTGGGATATGAATTTTATCAAGCAACATTTTCTTCCTGTTGATGTGGAAAAAATATTAGCTGTTCCTTTATGTGATGGGAATGGAGGGGATGTTGCTGTATGGCACTTTAGTGATGATGGACGGTTCTCTGTTAAATCTGGATATTGGTTTGGGATGGAAATGAAGAGGTTAGAGAAGGGTTCGAGTAGTGGTAGTGGGCATGTTAATTCAAACTCCATTAATATTTGGAGTCTCATCTGGGACCTATTAGTTCCCAATAAAGTCAAGCTGTTCTTATGGAGAGCTTGCCATGCCTTTCTACCTTGTGTTGAGCGCTTGTTTAAGCGCAATATCTGTTCTCATAGTGGCTGTGGGAGATGTGGGGAAGGAGAGGAAACGGTGGTTCATAGTTTGTGCTGGTGTCGTGTGGCTAAAAAAGTGTGGAAATGTACATACTGGAGAGGGGTGTATAAAAGTTGGCAGATTTCTAGCTTTGCTGATTTATTTGGCTTGGTAGCTATGGAGGGGAATATCAAAAATACTGAATTGTTTGCTCTTATTTGCTGGTGGTTATGGAAGGACAGAAATGAGGTCTTTCATGGGAAAAAAGGCCTTGAGCCTAGGCAGATTGTGGAGAAATGCTTGGAGTGGCAACGTGAATTTTCTGGAGTAATGTTGAGAAGGAAAAATCTTCAGATGGGAGGGGGTAATGGTGTTGAAGTGCAGCAAAGTCATGGAGAGGTGGGGAGAAGTAGTACGCATGAGCAGGCTGCCAAATTGTACTTTGATGGTGCTTGTGATAATAATACAAATATTGTTGGTATTGGCGCTGTAGTGTTAAGTGATAATGGGGAGCTGATGGGAGCCATTTCAGTGCCTATGGAAGCTGTTCTCAAACCCCACATCATCGAAGCTTTAGCACTTTGGCATGGGATGAAATTGTGTAGACAAATGGGGGTAACAAAGTTGGCGATTGCAGGAGATGCGGTCAATGTGATCAATGCAATTGGTAGGAATGTACTTGATTTGAGCGATATTGGAGGAATTATGGATGCAGTTCGTAGGATGAAGGCAGAGTTTGAATGGGTGTCCTGGAAACATGTGCGTAAGCGCCAAAACAAGATTGCTCACACTCTTGCTCGACATGCTTTGAAGATGGTCCAGTCTATGTTTTGTTATGATTCAGGGCCCCCATGGCTCCATGAAGTTATTGTTGCTCATAGTAGAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

1215

Amino Acids

135.71

Weight (kDa)

8.87

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 35 - 115 3.9e-09 Domain of unknown function (DUF4283)
zf-RVT PF13966 880 - 952 2.3e-13 zinc-binding in reverse transcriptase
RVT_3 PF13456 1066 - 1187 7.6e-20 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 410
AasI GACNNNNNNGTC 1 cut(s) 1435
AatII GACGTC 1 cut(s) 1076
AccB7I CCANNNNNTGG 1 cut(s) 1837
AccBSI CCGCTC 1 cut(s) 697
AccI GTMKAC 2 cut(s) 439, 3358
AccII CGCG 1 cut(s) 847
AciI CCGC 8 cut(s) 697, 908, 943, 950, 1354, 1384, 1553, 3398
AcoI YGGCCR 2 cut(s) 933, 2249
AcsI RAATTY 5 cut(s) 21, 1138, 2325, 2443, 3071
AcuI CTGAAG 2 cut(s) 2073, 3089
AcyI GRCGYC 1 cut(s) 1073
AfaI GTAC 7 cut(s) 666, 1599, 2196, 2863, 3169, 3194, 3432
AfeI AGCGCT 1 cut(s) 2747
AfiI CCNNNNNNNGG 9 cut(s) 467, 676, 949, 1249, 1369, 1390, 1837, 2025, 2247
AflIII ACRYGT 1 cut(s) 3511
AhlI ACTAGT 2 cut(s) 1615, 1652
AjnI CCWGG 3 cut(s) 1830, 2425, 3503
AleI CACNNNNGTG 2 cut(s) 945, 2541
AloI GAACNNNNNNTCC 2 cut(s) 2290, 2322
Alw26I GTCTC 9 cut(s) 356, 1041, 1064, 1429, 1643, 1849, 2027, 2307, 2669
Ama87I CYCGRG 1 cut(s) 1005
Aor51HI AGCGCT 1 cut(s) 2747
AoxI GGCC 9 cut(s) 153, 933, 1240, 1351, 1360, 1709, 2249, 3022, 3599
ApaI GGGCCC 1 cut(s) 3603
ApeKI GCWGC 6 cut(s) 320, 1694, 2015, 2213, 3136, 3182
ApoI RAATTY 5 cut(s) 21, 1138, 2325, 2443, 3071
ArsI GACNNNNNNTTYG 2 cut(s) 785, 817
AseI ATTAAT 1 cut(s) 2652
Asp700I GAANNNNTTC 1 cut(s) 3300
AspA2I CCTAGG 1 cut(s) 3032
AspLEI GCGC 4 cut(s) 2748, 2760, 3242, 3525
AsuC2I CCSGG 4 cut(s) 879, 981, 2020, 2253
AsuHPI GGTGA 4 cut(s) 199, 211, 976, 2216
AsuII TTCGAA 1 cut(s) 246
AvaI CYCGRG 1 cut(s) 1005
AvaII GGWCC 5 cut(s) 838, 875, 2358, 2674, 3571
AvrII CCTAGG 1 cut(s) 3032
AxyI CCTNAGG 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 3603
BalI TGGCCA 1 cut(s) 935
BamHI GGATCC 1 cut(s) 2389
BanII GRGCYC 1 cut(s) 3603
BbsI GAAGAC 1 cut(s) 225
BbvI GCAGC 6 cut(s) 307, 1706, 2002, 2225, 3148, 3169
BceAI ACGGC 2 cut(s) 930, 1305
BciT130I CCWGG 3 cut(s) 1832, 2427, 3505
BclI TGATCA 1 cut(s) 3408
BcnI CCSGG 4 cut(s) 879, 981, 2020, 2253
BcoDI GTCTC 9 cut(s) 356, 1041, 1064, 1429, 1643, 1849, 2027, 2307, 2669
BcuI ACTAGT 2 cut(s) 1615, 1652
BfmI CTRYAG 3 cut(s) 590, 2217, 3243
BfoI RGCGCY 3 cut(s) 2749, 3243, 3526
BglI GCCNNNNNGGC 2 cut(s) 1359, 3607
BglII AGATCT 1 cut(s) 2272
BisI GCNGC 8 cut(s) 321, 1354, 1384, 1695, 2016, 2214, 3137, 3183
BlnI CCTAGG 1 cut(s) 3032
BlsI GCNGC 8 cut(s) 322, 1355, 1385, 1696, 2017, 2215, 3138, 3184
Bme1390I CCNGG 7 cut(s) 879, 981, 1832, 2020, 2253, 2427, 3505
Bme18I GGWCC 5 cut(s) 838, 875, 2358, 2674, 3571
BmeT110I CYCGRG 1 cut(s) 1005
BmiI GGNNCC 9 cut(s) 839, 927, 1382, 2391, 2675, 3277, 3601, 3602, 3611
BmrFI CCNGG 7 cut(s) 879, 981, 1832, 2020, 2253, 2427, 3505
BmrI ACTGGG 1 cut(s) 455
BmuI ACTGGG 1 cut(s) 455
BpiI GAAGAC 1 cut(s) 225
BplI GAGNNNNNCTC 4 cut(s) 80, 112, 988, 1020
BpmI CTGGAG 4 cut(s) 1814, 2331, 2890, 3099
Bpu10I CCTNAGC 1 cut(s) 918
Bpu14I TTCGAA 1 cut(s) 246
BpuEI CTTGAG 2 cut(s) 351, 3047
BpuMI CCSGG 4 cut(s) 879, 981, 2020, 2253
BsaHI GRCGYC 1 cut(s) 1073
BsaI GGTCTC 3 cut(s) 1429, 1849, 2307
BsaJI CCNNGG 8 cut(s) 287, 1243, 1712, 1960, 2019, 2354, 3032, 3605
Bsc4I CCNNNNNNNGG 9 cut(s) 467, 676, 949, 1249, 1369, 1390, 1837, 2025, 2247
Bse118I RCCGGY 1 cut(s) 904
Bse1I ACTGG 5 cut(s) 439, 450, 2174, 2873, 3574
Bse21I CCTNAGG 1 cut(s) 97
BseBI CCWGG 3 cut(s) 1832, 2427, 3505
BseDI CCNNGG 8 cut(s) 287, 1243, 1712, 1960, 2019, 2354, 3032, 3605
BseLI CCNNNNNNNGG 9 cut(s) 467, 676, 949, 1249, 1369, 1390, 1837, 2025, 2247
BseNI ACTGG 5 cut(s) 439, 450, 2174, 2873, 3574
BseRI GAGGAG 2 cut(s) 1230, 1399
BseSI GKGCMC 1 cut(s) 3603
BseXI GCAGC 6 cut(s) 307, 1706, 2002, 2225, 3148, 3169
BsgI GTGCAG 1 cut(s) 3155
Bsh1236I CGCG 1 cut(s) 847
BshFI GGCC 9 cut(s) 155, 935, 1242, 1353, 1362, 1711, 2251, 3024, 3601
BsiHKCI CYCGRG 1 cut(s) 1005
BsiSI CCGG 5 cut(s) 878, 905, 980, 2019, 2252
BslFI GGGAC 6 cut(s) 966, 1330, 1593, 1742, 1771, 2687
BslI CCNNNNNNNGG 9 cut(s) 467, 676, 949, 1249, 1369, 1390, 1837, 2025, 2247
BsmAI GTCTC 9 cut(s) 356, 1041, 1064, 1429, 1643, 1849, 2027, 2307, 2669
BsmBI CGTCTC 2 cut(s) 1041, 1064
BsmFI GGGAC 6 cut(s) 966, 1330, 1593, 1742, 1771, 2687
BsmI GAATGC 2 cut(s) 868, 2017
BsnI GGCC 9 cut(s) 155, 935, 1242, 1353, 1362, 1711, 2251, 3024, 3601
Bso31I GGTCTC 3 cut(s) 1429, 1849, 2307
BsoBI CYCGRG 1 cut(s) 1005
Bsp119I TTCGAA 1 cut(s) 246
Bsp120I GGGCCC 1 cut(s) 3599
Bsp1286I GDGCHC 1 cut(s) 3603
Bsp1407I TGTACA 1 cut(s) 2861
Bsp19I CCATGG 2 cut(s) 1243, 3605
BspACI CCGC 8 cut(s) 697, 908, 943, 950, 1354, 1384, 1553, 3398
BspANI GGCC 9 cut(s) 155, 935, 1242, 1353, 1362, 1711, 2251, 3024, 3601
BspFNI CGCG 1 cut(s) 847
BspLI GGNNCC 9 cut(s) 839, 927, 1382, 2391, 2675, 3277, 3601, 3602, 3611
BspT104I TTCGAA 1 cut(s) 246
BspTNI GGTCTC 3 cut(s) 1429, 1849, 2307
BsrBI CCGCTC 1 cut(s) 697
BsrFI RCCGGY 1 cut(s) 904
BsrGI TGTACA 1 cut(s) 2861
BsrI ACTGG 5 cut(s) 439, 450, 2174, 2873, 3574
BssAI RCCGGY 1 cut(s) 904
BssECI CCNNGG 8 cut(s) 287, 1243, 1712, 1960, 2019, 2354, 3032, 3605
BssNI GRCGYC 1 cut(s) 1073
BssT1I CCWWGG 6 cut(s) 287, 1243, 1712, 2354, 3032, 3605
Bst2UI CCWGG 3 cut(s) 1832, 2427, 3505
Bst4CI ACNGT 5 cut(s) 964, 1964, 2204, 2556, 2812
Bst6I CTCTTC 3 cut(s) 1205, 1290, 2591
BstACI GRCGYC 1 cut(s) 1073
BstAPI GCANNNNNTGC 1 cut(s) 3395
BstAUI TGTACA 1 cut(s) 2861
BstBI TTCGAA 1 cut(s) 246
BstC8I GCNNGC 7 cut(s) 423, 720, 1177, 1892, 2411, 2719, 3180
BstDSI CCRYGG 3 cut(s) 1243, 1960, 3605
BstFNI CGCG 1 cut(s) 847
BstH2I RGCGCY 3 cut(s) 2749, 3243, 3526
BstHHI GCGC 4 cut(s) 2748, 2760, 3242, 3525
BstMAI GTCTC 9 cut(s) 356, 1041, 1064, 1429, 1643, 1849, 2027, 2307, 2669
BstMWI GCNNNNNNNGC 6 cut(s) 914, 1359, 2723, 3395, 3557, 3607
BstNI CCWGG 3 cut(s) 1832, 2427, 3505
BstNSI RCATGY 3 cut(s) 2636, 3515, 3560
BstSCI CCNGG 7 cut(s) 877, 979, 1830, 2018, 2251, 2425, 3503
BstSFI CTRYAG 3 cut(s) 590, 2217, 3243
BstSLI GKGCMC 1 cut(s) 3603
BstUI CGCG 1 cut(s) 847
BstV1I GCAGC 6 cut(s) 307, 1706, 2002, 2225, 3148, 3169
BstV2I GAAGAC 1 cut(s) 225
BstX2I RGATCY 6 cut(s) 79, 231, 1009, 1568, 2272, 2389
BstXI CCANNNNNNTGG 3 cut(s) 798, 2355, 2433
BstYI RGATCY 6 cut(s) 79, 231, 1009, 1568, 2272, 2389
Bsu36I CCTNAGG 1 cut(s) 97
BsuRI GGCC 9 cut(s) 155, 935, 1242, 1353, 1362, 1711, 2251, 3024, 3601
BtgI CCRYGG 3 cut(s) 1243, 1960, 3605
BtgZI GCGATG 1 cut(s) 1194
BtsI GCAGTG 1 cut(s) 496
BtsIMutI CAGTG 3 cut(s) 496, 2181, 3291
Cac8I GCNNGC 7 cut(s) 423, 720, 1177, 1892, 2411, 2719, 3180
CfoI GCGC 4 cut(s) 2748, 2760, 3242, 3525
Cfr10I RCCGGY 1 cut(s) 904
CsiI ACCWGGT 1 cut(s) 2425
Csp6I GTAC 7 cut(s) 665, 1598, 2195, 2862, 3168, 3193, 3431
CviQI GTAC 7 cut(s) 665, 1598, 2195, 2862, 3168, 3193, 3431
DrdI GACNNNNNNGTC 1 cut(s) 1435
DseDI GACNNNNNNGTC 1 cut(s) 1435
EaeI YGGCCR 2 cut(s) 933, 2249
Eam1104I CTCTTC 3 cut(s) 1205, 1290, 2591
EarI CTCTTC 3 cut(s) 1205, 1290, 2591
EciI GGCGGA 1 cut(s) 923
Eco130I CCWWGG 6 cut(s) 287, 1243, 1712, 2354, 3032, 3605
Eco147I AGGCCT 1 cut(s) 3024
Eco24I GRGCYC 1 cut(s) 3603
Eco31I GGTCTC 3 cut(s) 1429, 1849, 2307
Eco32I GATATC 1 cut(s) 2142
Eco47I GGWCC 5 cut(s) 838, 875, 2358, 2674, 3571
Eco47III AGCGCT 1 cut(s) 2747
Eco57I CTGAAG 2 cut(s) 2073, 3089
Eco81I CCTNAGG 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 1005
EcoO109I RGGNCCY 6 cut(s) 154, 1360, 1709, 2674, 3599, 3600
EcoRI GAATTC 1 cut(s) 1138
EcoRII CCWGG 3 cut(s) 1830, 2425, 3503
EcoRV GATATC 1 cut(s) 2142
EcoT14I CCWWGG 6 cut(s) 287, 1243, 1712, 2354, 3032, 3605
EcoT38I GRGCYC 1 cut(s) 3603
ErhI CCWWGG 6 cut(s) 287, 1243, 1712, 2354, 3032, 3605
Esp3I CGTCTC 2 cut(s) 1041, 1064
FalI AAGNNNNNCTT 6 cut(s) 1587, 1619, 2225, 2257, 2690, 2722
FaqI GGGAC 6 cut(s) 966, 1330, 1593, 1742, 1771, 2687
FauI CCCGC 1 cut(s) 943
FauNDI CATATG 1 cut(s) 2106
FbaI TGATCA 1 cut(s) 3408
FblI GTMKAC 2 cut(s) 439, 3358
Fnu4HI GCNGC 8 cut(s) 321, 1354, 1384, 1695, 2016, 2214, 3137, 3183
FriOI GRGCYC 1 cut(s) 3603
Fsp4HI GCNGC 8 cut(s) 321, 1354, 1384, 1695, 2016, 2214, 3137, 3183
GlaI GCGC 4 cut(s) 2747, 2759, 3241, 3524
GluI GCNGC 8 cut(s) 321, 1354, 1384, 1695, 2016, 2214, 3137, 3183
GsuI CTGGAG 4 cut(s) 1814, 2331, 2890, 3099
HaeII RGCGCY 3 cut(s) 2749, 3243, 3526
HaeIII GGCC 9 cut(s) 155, 935, 1242, 1353, 1362, 1711, 2251, 3024, 3601
HapII CCGG 5 cut(s) 878, 905, 980, 2019, 2252
HhaI GCGC 4 cut(s) 2748, 2760, 3242, 3525
Hin1I GRCGYC 1 cut(s) 1073
Hin6I GCGC 4 cut(s) 2746, 2758, 3240, 3523
HinP1I GCGC 4 cut(s) 2746, 2758, 3240, 3523
HincII GTYRAC 1 cut(s) 2171
HindII GTYRAC 1 cut(s) 2171
HindIII AAGCTT 2 cut(s) 419, 3324
HpaII CCGG 5 cut(s) 878, 905, 980, 2019, 2252
HphI GGTGA 4 cut(s) 199, 211, 976, 2216
Hpy166II GTNNAC 4 cut(s) 440, 665, 2171, 3359
Hpy8I GTNNAC 4 cut(s) 440, 665, 2171, 3359
Hpy99I CGWCG 1 cut(s) 1291
HpyCH4III ACNGT 5 cut(s) 964, 1964, 2204, 2556, 2812
HpyCH4IV ACGT 4 cut(s) 175, 571, 1073, 3067
HpyF10VI GCNNNNNNNGC 6 cut(s) 914, 1359, 2723, 3395, 3557, 3607
HpySE526I ACGT 4 cut(s) 175, 571, 1073, 3067
Hsp92I GRCGYC 1 cut(s) 1073
HspAI GCGC 4 cut(s) 2746, 2758, 3240, 3523
Ksp22I TGATCA 1 cut(s) 3408
LmnI GCTCC 9 cut(s) 332, 925, 1222, 1380, 1921, 2110, 3265, 3275, 3615
Lsp1109I GCAGC 6 cut(s) 307, 1706, 2002, 2225, 3148, 3169
MabI ACCWGGT 1 cut(s) 2425
MaeII ACGT 4 cut(s) 175, 571, 1073, 3067
MaeIII GTNAC 4 cut(s) 526, 2099, 2371, 3370
MbiI CCGCTC 1 cut(s) 697
MfeI CAATTG 4 cut(s) 39, 561, 1812, 3417
MflI RGATCY 6 cut(s) 79, 231, 1009, 1568, 2272, 2389
MhlI GDGCHC 1 cut(s) 3603
MlsI TGGCCA 1 cut(s) 935
MluNI TGGCCA 1 cut(s) 935
MlyI GAGTC 6 cut(s) 215, 358, 1793, 1821, 1862, 2671
MmeI TCCRAC 3 cut(s) 795, 1978, 2372
Mox20I TGGCCA 1 cut(s) 935
MroXI GAANNNNTTC 1 cut(s) 3300
MscI TGGCCA 1 cut(s) 935
MslI CAYNNNNRTG 6 cut(s) 945, 1587, 1929, 1965, 2541, 3284
Msp20I TGGCCA 1 cut(s) 935
MspA1I CMGCKG 1 cut(s) 595
MspI CCGG 5 cut(s) 878, 905, 980, 2019, 2252
MspR9I CCNGG 7 cut(s) 879, 981, 1832, 2020, 2253, 2427, 3505
MunI CAATTG 4 cut(s) 39, 561, 1812, 3417
Mva1269I GAATGC 2 cut(s) 868, 2017
MvaI CCWGG 3 cut(s) 1832, 2427, 3505
MvnI CGCG 1 cut(s) 847
MwoI GCNNNNNNNGC 6 cut(s) 914, 1359, 2723, 3395, 3557, 3607
NciI CCSGG 4 cut(s) 879, 981, 2020, 2253
NcoI CCATGG 2 cut(s) 1243, 3605
NdeI CATATG 1 cut(s) 2106
NlaIV GGNNCC 9 cut(s) 839, 927, 1382, 2391, 2675, 3277, 3601, 3602, 3611
NmuCI GTSAC 1 cut(s) 526
NspI RCATGY 3 cut(s) 2636, 3515, 3560
NspV TTCGAA 1 cut(s) 246
OliI CACNNNNGTG 2 cut(s) 945, 2541
PceI AGGCCT 1 cut(s) 3024
PciI ACATGT 1 cut(s) 3511
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 2 cut(s) 868, 2017
PdmI GAANNNNTTC 1 cut(s) 3300
PfeI GAWTC 6 cut(s) 31, 248, 498, 1001, 1607, 3593
PflMI CCANNNNNTGG 1 cut(s) 1837
PfoI TCCNGGA 4 cut(s) 877, 979, 1830, 3503
PkrI GCNGC 8 cut(s) 322, 1355, 1385, 1696, 2017, 2215, 3138, 3184
PleI GAGTC 6 cut(s) 215, 358, 1792, 1821, 1861, 2670
PpsI GAGTC 6 cut(s) 215, 358, 1792, 1821, 1861, 2670
PpuMI RGGWCCY 1 cut(s) 2674
PscI ACATGT 1 cut(s) 3511
PshBI ATTAAT 1 cut(s) 2652
PsiI TTATAA 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 2674
Psp6I CCWGG 3 cut(s) 1830, 2425, 3503
PspGI CCWGG 3 cut(s) 1830, 2425, 3503
PspN4I GGNNCC 9 cut(s) 839, 927, 1382, 2391, 2675, 3277, 3601, 3602, 3611
PspOMI GGGCCC 1 cut(s) 3599
PspPPI RGGWCCY 1 cut(s) 2674
PsuI RGATCY 6 cut(s) 79, 231, 1009, 1568, 2272, 2389
PvuII CAGCTG 1 cut(s) 595
RsaI GTAC 7 cut(s) 666, 1599, 2196, 2863, 3169, 3194, 3432
RsaNI GTAC 7 cut(s) 665, 1598, 2195, 2862, 3168, 3193, 3431
RseI CAYNNNNRTG 6 cut(s) 945, 1587, 1929, 1965, 2541, 3284
SatI GCNGC 8 cut(s) 321, 1354, 1384, 1695, 2016, 2214, 3137, 3183
SchI GAGTC 6 cut(s) 215, 358, 1793, 1821, 1862, 2671
ScrFI CCNGG 7 cut(s) 879, 981, 1832, 2020, 2253, 2427, 3505
SduI GDGCHC 1 cut(s) 3603
SexAI ACCWGGT 1 cut(s) 2425
SfcI CTRYAG 3 cut(s) 590, 2217, 3243
SfiI GGCCNNNNNGGCC 1 cut(s) 1359
SfuI TTCGAA 1 cut(s) 246
SinI GGWCC 5 cut(s) 838, 875, 2358, 2674, 3571
SmiMI CAYNNNNRTG 6 cut(s) 945, 1587, 1929, 1965, 2541, 3284
SmlI CTYRAG 2 cut(s) 366, 3026
SmoI CTYRAG 2 cut(s) 366, 3026
SpeI ACTAGT 2 cut(s) 1615, 1652
SseBI AGGCCT 1 cut(s) 3024
SsiI CCGC 8 cut(s) 697, 908, 943, 950, 1354, 1384, 1553, 3398
SspI AATATT 4 cut(s) 2080, 2487, 2656, 3226
StuI AGGCCT 1 cut(s) 3024
StyD4I CCNGG 7 cut(s) 877, 979, 1830, 2018, 2251, 2425, 3503
StyI CCWWGG 6 cut(s) 287, 1243, 1712, 2354, 3032, 3605
TaaI ACNGT 5 cut(s) 964, 1964, 2204, 2556, 2812
TaiI ACGT 4 cut(s) 178, 574, 1076, 3070
TaqII GACCGA 3 cut(s) 1411, 1469, 1791
TatI WGTACW 5 cut(s) 664, 1597, 2861, 3192, 3430
TauI GCSGC 2 cut(s) 1356, 1386
TfiI GAWTC 6 cut(s) 31, 248, 498, 1001, 1607, 3593
TscAI CASTG 3 cut(s) 496, 2181, 3291
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 6 cut(s) 320, 1694, 2015, 2213, 3136, 3182
Tsp45I GTSAC 1 cut(s) 526
TspGWI ACGGA 1 cut(s) 899
TspRI CASTG 3 cut(s) 496, 2181, 3291
Van91I CCANNNNNTGG 1 cut(s) 1837
VpaK11BI GGWCC 5 cut(s) 838, 875, 2358, 2674, 3571
VspI ATTAAT 1 cut(s) 2652
XapI RAATTY 5 cut(s) 21, 1138, 2325, 2443, 3071
XbaI TCTAGA 1 cut(s) 1157
XceI RCATGY 3 cut(s) 2636, 3515, 3560
XcmI CCANNNNNNNNNTGG 2 cut(s) 543, 653
XmaJI CCTAGG 1 cut(s) 3032
XmiI GTMKAC 2 cut(s) 439, 3358
XmnI GAANNNNTTC 1 cut(s) 3300
ZraI GACGTC 1 cut(s) 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.