Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 35 - 106 | 4.9e-09 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 412 |
| AciI | CCGC | 2 cut(s) | 428, 833 |
| AclWI | GGATC | 8 cut(s) | 27, 61, 338, 351, 376, 389, 740, 844 |
| AcoI | YGGCCR | 1 cut(s) | 36 |
| AcsI | RAATTY | 2 cut(s) | 72, 590 |
| AfaI | GTAC | 2 cut(s) | 166, 312 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 470 |
| AgsI | TTSAA | 2 cut(s) | 152, 534 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 687, 719 |
| AluBI | AGCT | 1 cut(s) | 657 |
| AluI | AGCT | 1 cut(s) | 657 |
| Alw21I | GWGCWC | 1 cut(s) | 659 |
| Alw26I | GTCTC | 1 cut(s) | 2 |
| AlwI | GGATC | 8 cut(s) | 27, 61, 338, 351, 376, 389, 740, 844 |
| Ama87I | CYCGRG | 1 cut(s) | 658 |
| AoxI | GGCC | 1 cut(s) | 36 |
| ApoI | RAATTY | 2 cut(s) | 72, 590 |
| AspLEI | GCGC | 1 cut(s) | 435 |
| AspS9I | GGNCC | 1 cut(s) | 784 |
| AsuC2I | CCSGG | 1 cut(s) | 386 |
| AvaI | CYCGRG | 1 cut(s) | 658 |
| AvaII | GGWCC | 1 cut(s) | 784 |
| BalI | TGGCCA | 1 cut(s) | 38 |
| BamHI | GGATCC | 2 cut(s) | 343, 381 |
| BanII | GRGCYC | 2 cut(s) | 187, 659 |
| BbsI | GAAGAC | 1 cut(s) | 60 |
| Bbv12I | GWGCWC | 1 cut(s) | 659 |
| BccI | CCATC | 4 cut(s) | 326, 543, 705, 812 |
| BcnI | CCSGG | 1 cut(s) | 386 |
| BcoDI | GTCTC | 1 cut(s) | 2 |
| BfmI | CTRYAG | 1 cut(s) | 465 |
| BfuAI | ACCTGC | 1 cut(s) | 412 |
| BmcAI | AGTACT | 1 cut(s) | 312 |
| Bme1390I | CCNGG | 1 cut(s) | 386 |
| Bme18I | GGWCC | 1 cut(s) | 784 |
| BmeT110I | CYCGRG | 1 cut(s) | 658 |
| BmgT120I | GGNCC | 1 cut(s) | 784 |
| BmiI | GGNNCC | 3 cut(s) | 345, 383, 786 |
| BmrFI | CCNGG | 1 cut(s) | 386 |
| BmsI | GCATC | 2 cut(s) | 405, 619 |
| BpiI | GAAGAC | 1 cut(s) | 60 |
| BpuMI | CCSGG | 1 cut(s) | 386 |
| BsaAI | YACGTR | 1 cut(s) | 161 |
| BsaBI | GATNNNNATC | 1 cut(s) | 225 |
| BsaJI | CCNNGG | 2 cut(s) | 212, 287 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 470 |
| Bse8I | GATNNNNATC | 1 cut(s) | 225 |
| BseDI | CCNNGG | 2 cut(s) | 212, 287 |
| BseGI | GGATG | 3 cut(s) | 94, 668, 736 |
| BseJI | GATNNNNATC | 1 cut(s) | 225 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 470 |
| BseMII | CTCAG | 1 cut(s) | 383 |
| BseRI | GAGGAG | 2 cut(s) | 209, 486 |
| BshFI | GGCC | 1 cut(s) | 38 |
| BsiHKAI | GWGCWC | 1 cut(s) | 659 |
| BsiHKCI | CYCGRG | 1 cut(s) | 658 |
| BsiSI | CCGG | 1 cut(s) | 385 |
| BslFI | GGGAC | 1 cut(s) | 770 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 470 |
| BsmAI | GTCTC | 1 cut(s) | 2 |
| BsmFI | GGGAC | 1 cut(s) | 770 |
| BsnI | GGCC | 1 cut(s) | 38 |
| BsoBI | CYCGRG | 1 cut(s) | 658 |
| Bsp1286I | GDGCHC | 2 cut(s) | 187, 659 |
| Bsp19I | CCATGG | 2 cut(s) | 212, 287 |
| BspACI | CCGC | 2 cut(s) | 428, 833 |
| BspANI | GGCC | 1 cut(s) | 38 |
| BspCNI | CTCAG | 1 cut(s) | 382 |
| BspLI | GGNNCC | 3 cut(s) | 345, 383, 786 |
| BspMI | ACCTGC | 1 cut(s) | 412 |
| BspPI | GGATC | 8 cut(s) | 27, 61, 338, 351, 376, 389, 740, 844 |
| BssECI | CCNNGG | 2 cut(s) | 212, 287 |
| BssT1I | CCWWGG | 2 cut(s) | 212, 287 |
| Bst4CI | ACNGT | 2 cut(s) | 126, 582 |
| BstBAI | YACGTR | 1 cut(s) | 161 |
| BstC8I | GCNNGC | 1 cut(s) | 524 |
| BstDEI | CTNAG | 3 cut(s) | 307, 369, 726 |
| BstDSI | CCRYGG | 2 cut(s) | 212, 287 |
| BstEII | GGTNACC | 1 cut(s) | 199 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 468 |
| BstF5I | GGATG | 3 cut(s) | 94, 668, 736 |
| BstHHI | GCGC | 1 cut(s) | 435 |
| BstMAI | GTCTC | 1 cut(s) | 2 |
| BstPI | GGTNACC | 1 cut(s) | 199 |
| BstSCI | CCNGG | 1 cut(s) | 384 |
| BstSFI | CTRYAG | 1 cut(s) | 465 |
| BstSNI | TACGTA | 1 cut(s) | 161 |
| BstV2I | GAAGAC | 1 cut(s) | 60 |
| BstX2I | RGATCY | 3 cut(s) | 19, 343, 381 |
| BstYI | RGATCY | 3 cut(s) | 19, 343, 381 |
| BsuRI | GGCC | 1 cut(s) | 38 |
| BtgI | CCRYGG | 2 cut(s) | 212, 287 |
| BtsCI | GGATG | 3 cut(s) | 94, 668, 736 |
| BtsI | GCAGTG | 1 cut(s) | 576 |
| BtsIMutI | CAGTG | 1 cut(s) | 576 |
| BveI | ACCTGC | 1 cut(s) | 412 |
| Cac8I | GCNNGC | 1 cut(s) | 524 |
| CfoI | GCGC | 1 cut(s) | 435 |
| Cfr13I | GGNCC | 1 cut(s) | 784 |
| Csp6I | GTAC | 2 cut(s) | 165, 311 |
| CviAII | CATG | 7 cut(s) | 47, 169, 213, 288, 302, 337, 650 |
| CviJI | RGCY | 4 cut(s) | 38, 185, 522, 657 |
| CviKI_1 | RGCY | 4 cut(s) | 38, 185, 522, 657 |
| CviQI | GTAC | 2 cut(s) | 165, 311 |
| DdeI | CTNAG | 3 cut(s) | 307, 369, 726 |
| EaeI | YGGCCR | 1 cut(s) | 36 |
| Ecl136II | GAGCTC | 1 cut(s) | 657 |
| Eco105I | TACGTA | 1 cut(s) | 161 |
| Eco130I | CCWWGG | 2 cut(s) | 212, 287 |
| Eco24I | GRGCYC | 2 cut(s) | 187, 659 |
| Eco47I | GGWCC | 1 cut(s) | 784 |
| Eco53kI | GAGCTC | 1 cut(s) | 657 |
| Eco88I | CYCGRG | 1 cut(s) | 658 |
| Eco91I | GGTNACC | 1 cut(s) | 199 |
| EcoICRI | GAGCTC | 1 cut(s) | 657 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 468 |
| EcoO65I | GGTNACC | 1 cut(s) | 199 |
| EcoT14I | CCWWGG | 2 cut(s) | 212, 287 |
| EcoT38I | GRGCYC | 2 cut(s) | 187, 659 |
| ErhI | CCWWGG | 2 cut(s) | 212, 287 |
| FaeI | CATG | 7 cut(s) | 50, 172, 216, 291, 305, 340, 653 |
| FaqI | GGGAC | 1 cut(s) | 770 |
| FatI | CATG | 7 cut(s) | 46, 168, 212, 287, 301, 336, 649 |
| FauI | CCCGC | 1 cut(s) | 826 |
| FokI | GGATG | 3 cut(s) | 101, 675, 743 |
| FriOI | GRGCYC | 2 cut(s) | 187, 659 |
| GlaI | GCGC | 1 cut(s) | 434 |
| HaeIII | GGCC | 1 cut(s) | 38 |
| HapII | CCGG | 1 cut(s) | 385 |
| HhaI | GCGC | 1 cut(s) | 435 |
| Hin1II | CATG | 7 cut(s) | 50, 172, 216, 291, 305, 340, 653 |
| Hin6I | GCGC | 1 cut(s) | 433 |
| HinP1I | GCGC | 1 cut(s) | 433 |
| HincII | GTYRAC | 1 cut(s) | 129 |
| HindII | GTYRAC | 1 cut(s) | 129 |
| HinfI | GANTC | 4 cut(s) | 221, 283, 365, 415 |
| HpaI | GTTAAC | 1 cut(s) | 129 |
| HpaII | CCGG | 1 cut(s) | 385 |
| Hpy166II | GTNNAC | 3 cut(s) | 129, 578, 770 |
| Hpy188I | TCNGA | 5 cut(s) | 24, 79, 226, 586, 779 |
| Hpy188III | TCNNGA | 3 cut(s) | 379, 660, 849 |
| Hpy8I | GTNNAC | 3 cut(s) | 129, 578, 770 |
| HpyAV | CCTTC | 2 cut(s) | 258, 633 |
| HpyCH4III | ACNGT | 2 cut(s) | 126, 582 |
| HpyCH4IV | ACGT | 3 cut(s) | 31, 160, 293 |
| HpyCH4V | TGCA | 4 cut(s) | 46, 526, 673, 763 |
| HpyF3I | CTNAG | 3 cut(s) | 307, 369, 726 |
| HpySE526I | ACGT | 3 cut(s) | 31, 160, 293 |
| Hsp92II | CATG | 7 cut(s) | 50, 172, 216, 291, 305, 340, 653 |
| HspAI | GCGC | 1 cut(s) | 433 |
| KspAI | GTTAAC | 1 cut(s) | 129 |
| LmnI | GCTCC | 1 cut(s) | 430 |
| LpnPI | CCDG | 8 cut(s) | 68, 71, 94, 166, 356, 364, 398, 417 |
| LweI | GCATC | 2 cut(s) | 405, 619 |
| MaeII | ACGT | 3 cut(s) | 31, 160, 293 |
| MaeIII | GTNAC | 1 cut(s) | 199 |
| MboII | GAAGA | 6 cut(s) | 17, 65, 230, 497, 605, 720 |
| MfeI | CAATTG | 2 cut(s) | 446, 758 |
| MflI | RGATCY | 3 cut(s) | 19, 343, 381 |
| MhlI | GDGCHC | 2 cut(s) | 187, 659 |
| MlsI | TGGCCA | 1 cut(s) | 38 |
| MluCI | AATT | 6 cut(s) | 72, 354, 446, 590, 720, 758 |
| MluNI | TGGCCA | 1 cut(s) | 38 |
| MlyI | GAGTC | 2 cut(s) | 292, 359 |
| MmeI | TCCRAC | 2 cut(s) | 97, 564 |
| Mox20I | TGGCCA | 1 cut(s) | 38 |
| MscI | TGGCCA | 1 cut(s) | 38 |
| MseI | TTAA | 3 cut(s) | 128, 275, 555 |
| Msp20I | TGGCCA | 1 cut(s) | 38 |
| MspI | CCGG | 1 cut(s) | 385 |
| MspR9I | CCNGG | 1 cut(s) | 386 |
| MunI | CAATTG | 2 cut(s) | 446, 758 |
| NciI | CCSGG | 1 cut(s) | 386 |
| NcoI | CCATGG | 2 cut(s) | 212, 287 |
| NlaIII | CATG | 7 cut(s) | 50, 172, 216, 291, 305, 340, 653 |
| NlaIV | GGNNCC | 3 cut(s) | 345, 383, 786 |
| PfeI | GAWTC | 2 cut(s) | 221, 415 |
| PleI | GAGTC | 2 cut(s) | 291, 359 |
| PpsI | GAGTC | 2 cut(s) | 291, 359 |
| Ppu21I | YACGTR | 1 cut(s) | 161 |
| Psp124BI | GAGCTC | 1 cut(s) | 659 |
| PspEI | GGTNACC | 1 cut(s) | 199 |
| PspN4I | GGNNCC | 3 cut(s) | 345, 383, 786 |
| PspPI | GGNCC | 1 cut(s) | 784 |
| PsuI | RGATCY | 3 cut(s) | 19, 343, 381 |
| RsaI | GTAC | 2 cut(s) | 166, 312 |
| RsaNI | GTAC | 2 cut(s) | 165, 311 |
| SacI | GAGCTC | 1 cut(s) | 659 |
| SaqAI | TTAA | 3 cut(s) | 128, 275, 555 |
| Sau96I | GGNCC | 1 cut(s) | 784 |
| ScaI | AGTACT | 1 cut(s) | 312 |
| SchI | GAGTC | 2 cut(s) | 292, 359 |
| ScrFI | CCNGG | 1 cut(s) | 386 |
| SduI | GDGCHC | 2 cut(s) | 187, 659 |
| SfaNI | GCATC | 2 cut(s) | 405, 619 |
| SfcI | CTRYAG | 1 cut(s) | 465 |
| SinI | GGWCC | 1 cut(s) | 784 |
| SnaBI | TACGTA | 1 cut(s) | 161 |
| Sse9I | AATT | 6 cut(s) | 72, 354, 446, 590, 720, 758 |
| SsiI | CCGC | 2 cut(s) | 428, 833 |
| SspI | AATATT | 1 cut(s) | 559 |
| SstI | GAGCTC | 1 cut(s) | 659 |
| StyD4I | CCNGG | 1 cut(s) | 384 |
| StyI | CCWWGG | 2 cut(s) | 212, 287 |
| TaaI | ACNGT | 2 cut(s) | 126, 582 |
| TaiI | ACGT | 3 cut(s) | 34, 163, 296 |
| TaqI | TCGA | 5 cut(s) | 262, 391, 667, 740, 816 |
| TasI | AATT | 6 cut(s) | 72, 354, 446, 590, 720, 758 |
| TatI | WGTACW | 1 cut(s) | 310 |
| TfiI | GAWTC | 2 cut(s) | 221, 415 |
| Tru1I | TTAA | 3 cut(s) | 128, 275, 555 |
| Tru9I | TTAA | 3 cut(s) | 128, 275, 555 |
| TscAI | CASTG | 1 cut(s) | 576 |
| TspDTI | ATGAA | 3 cut(s) | 185, 428, 824 |
| TspGWI | ACGGA | 1 cut(s) | 206 |
| TspRI | CASTG | 1 cut(s) | 576 |
| VpaK11BI | GGWCC | 1 cut(s) | 784 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 468 |
| XapI | RAATTY | 2 cut(s) | 72, 590 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 334 |
| ZrmI | AGTACT | 1 cut(s) | 312 |