ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 1 - 48 | 4.4e-11 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 189 |
| AccB1I | GGYRCC | 2 cut(s) | 123, 351 |
| AciI | CCGC | 2 cut(s) | 338, 355 |
| AcsI | RAATTY | 1 cut(s) | 209 |
| AcuI | CTGAAG | 1 cut(s) | 509 |
| AcyI | GRCGYC | 1 cut(s) | 352 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 361, 373, 393 |
| AgsI | TTSAA | 2 cut(s) | 509, 520 |
| AleI | CACNNNNGTG | 1 cut(s) | 35 |
| AluBI | AGCT | 2 cut(s) | 287, 447 |
| AluI | AGCT | 2 cut(s) | 287, 447 |
| Alw26I | GTCTC | 1 cut(s) | 339 |
| AoxI | GGCC | 1 cut(s) | 461 |
| ApeKI | GCWGC | 1 cut(s) | 326 |
| ApoI | RAATTY | 1 cut(s) | 209 |
| AspLEI | GCGC | 2 cut(s) | 30, 354 |
| AspS9I | GGNCC | 2 cut(s) | 364, 453 |
| AsuHPI | GGTGA | 1 cut(s) | 275 |
| AvaII | GGWCC | 2 cut(s) | 364, 453 |
| BaeGI | GKGCMC | 1 cut(s) | 126 |
| BanI | GGYRCC | 2 cut(s) | 123, 351 |
| BauI | CACGAG | 1 cut(s) | 401 |
| BbvI | GCAGC | 1 cut(s) | 313 |
| BccI | CCATC | 1 cut(s) | 260 |
| BcoDI | GTCTC | 1 cut(s) | 339 |
| BfaI | CTAG | 2 cut(s) | 132, 288 |
| BfoI | RGCGCY | 1 cut(s) | 355 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 397 |
| BisI | GCNGC | 2 cut(s) | 327, 355 |
| BlsI | GCNGC | 2 cut(s) | 328, 356 |
| Bme18I | GGWCC | 2 cut(s) | 364, 453 |
| BmgT120I | GGNCC | 2 cut(s) | 364, 453 |
| BmiI | GGNNCC | 5 cut(s) | 125, 353, 366, 378, 454 |
| BmsI | GCATC | 1 cut(s) | 138 |
| Bpu10I | CCTNAGC | 1 cut(s) | 448 |
| BpuEI | CTTGAG | 1 cut(s) | 442 |
| BsaAI | YACGTR | 1 cut(s) | 92 |
| BsaHI | GRCGYC | 1 cut(s) | 352 |
| BsaJI | CCNNGG | 2 cut(s) | 392, 464 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 228, 258 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 361, 373, 393 |
| BseDI | CCNNGG | 2 cut(s) | 392, 464 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 361, 373, 393 |
| BseSI | GKGCMC | 1 cut(s) | 126 |
| BseXI | GCAGC | 1 cut(s) | 313 |
| BsgI | GTGCAG | 1 cut(s) | 312 |
| BshFI | GGCC | 1 cut(s) | 463 |
| BshNI | GGYRCC | 2 cut(s) | 123, 351 |
| BsiSI | CCGG | 1 cut(s) | 362 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 361, 373, 393 |
| BsmAI | GTCTC | 1 cut(s) | 339 |
| BsmI | GAATGC | 2 cut(s) | 156, 412 |
| BsnI | GGCC | 1 cut(s) | 463 |
| Bsp1286I | GDGCHC | 1 cut(s) | 126 |
| BspACI | CCGC | 2 cut(s) | 338, 355 |
| BspANI | GGCC | 1 cut(s) | 463 |
| BspLI | GGNNCC | 5 cut(s) | 125, 353, 366, 378, 454 |
| BspT107I | GGYRCC | 2 cut(s) | 123, 351 |
| BssECI | CCNNGG | 2 cut(s) | 392, 464 |
| BssNI | GRCGYC | 1 cut(s) | 352 |
| BssSI | CACGAG | 1 cut(s) | 401 |
| BssT1I | CCWWGG | 2 cut(s) | 392, 464 |
| Bst2BI | CACGAG | 1 cut(s) | 401 |
| Bst4CI | ACNGT | 3 cut(s) | 34, 191, 333 |
| Bst6I | CTCTTC | 2 cut(s) | 24, 308 |
| BstACI | GRCGYC | 1 cut(s) | 352 |
| BstBAI | YACGTR | 1 cut(s) | 92 |
| BstC8I | GCNNGC | 2 cut(s) | 312, 359 |
| BstDEI | CTNAG | 3 cut(s) | 23, 200, 448 |
| BstH2I | RGCGCY | 1 cut(s) | 355 |
| BstHHI | GCGC | 2 cut(s) | 30, 354 |
| BstMAI | GTCTC | 1 cut(s) | 339 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 358, 397 |
| BstSLI | GKGCMC | 1 cut(s) | 126 |
| BstV1I | GCAGC | 1 cut(s) | 313 |
| BsuRI | GGCC | 1 cut(s) | 463 |
| BtsI | GCAGTG | 1 cut(s) | 280 |
| BtsIMutI | CAGTG | 2 cut(s) | 30, 280 |
| Cac8I | GCNNGC | 2 cut(s) | 312, 359 |
| CfoI | GCGC | 2 cut(s) | 30, 354 |
| Cfr13I | GGNCC | 2 cut(s) | 364, 453 |
| CviAII | CATG | 2 cut(s) | 221, 229 |
| CviJI | RGCY | 8 cut(s) | 206, 287, 400, 447, 463, 469, 487, 499 |
| CviKI_1 | RGCY | 8 cut(s) | 206, 287, 400, 447, 463, 469, 487, 499 |
| DdeI | CTNAG | 3 cut(s) | 23, 200, 448 |
| DinI | GGCGCC | 1 cut(s) | 353 |
| DraI | TTTAAA | 1 cut(s) | 76 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 189 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 189 |
| Eam1104I | CTCTTC | 2 cut(s) | 24, 308 |
| EarI | CTCTTC | 2 cut(s) | 24, 308 |
| Eco130I | CCWWGG | 2 cut(s) | 392, 464 |
| Eco47I | GGWCC | 2 cut(s) | 364, 453 |
| Eco57I | CTGAAG | 1 cut(s) | 509 |
| EcoO109I | RGGNCCY | 1 cut(s) | 453 |
| EcoT14I | CCWWGG | 2 cut(s) | 392, 464 |
| EcoT22I | ATGCAT | 1 cut(s) | 222 |
| EgeI | GGCGCC | 1 cut(s) | 353 |
| EheI | GGCGCC | 1 cut(s) | 353 |
| ErhI | CCWWGG | 2 cut(s) | 392, 464 |
| FaeI | CATG | 2 cut(s) | 224, 232 |
| FaiI | YATR | 8 cut(s) | 8, 81, 116, 218, 222, 230, 261, 434 |
| FatI | CATG | 2 cut(s) | 220, 228 |
| Fnu4HI | GCNGC | 2 cut(s) | 327, 355 |
| Fsp4HI | GCNGC | 2 cut(s) | 327, 355 |
| FspBI | CTAG | 2 cut(s) | 132, 288 |
| GlaI | GCGC | 2 cut(s) | 29, 353 |
| GluI | GCNGC | 2 cut(s) | 327, 355 |
| HaeII | RGCGCY | 1 cut(s) | 355 |
| HaeIII | GGCC | 1 cut(s) | 463 |
| HapII | CCGG | 1 cut(s) | 362 |
| HhaI | GCGC | 2 cut(s) | 30, 354 |
| Hin1I | GRCGYC | 1 cut(s) | 352 |
| Hin1II | CATG | 2 cut(s) | 224, 232 |
| Hin6I | GCGC | 2 cut(s) | 28, 352 |
| HinP1I | GCGC | 2 cut(s) | 28, 352 |
| HindIII | AAGCTT | 1 cut(s) | 445 |
| HinfI | GANTC | 4 cut(s) | 135, 293, 298, 425 |
| HpaII | CCGG | 1 cut(s) | 362 |
| HphI | GGTGA | 1 cut(s) | 275 |
| Hpy188I | TCNGA | 1 cut(s) | 482 |
| Hpy188III | TCNNGA | 2 cut(s) | 104, 374 |
| HpyAV | CCTTC | 2 cut(s) | 163, 477 |
| HpyCH4III | ACNGT | 3 cut(s) | 34, 191, 333 |
| HpyCH4IV | ACGT | 1 cut(s) | 91 |
| HpyCH4V | TGCA | 3 cut(s) | 220, 329, 412 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 358, 397 |
| HpyF3I | CTNAG | 3 cut(s) | 23, 200, 448 |
| HpySE526I | ACGT | 1 cut(s) | 91 |
| Hsp92I | GRCGYC | 1 cut(s) | 352 |
| Hsp92II | CATG | 2 cut(s) | 224, 232 |
| HspAI | GCGC | 2 cut(s) | 28, 352 |
| KasI | GGCGCC | 1 cut(s) | 351 |
| LpnPI | CCDG | 5 cut(s) | 33, 359, 371, 375, 393 |
| Lsp1109I | GCAGC | 1 cut(s) | 313 |
| LweI | GCATC | 1 cut(s) | 138 |
| MaeI | CTAG | 2 cut(s) | 132, 288 |
| MaeII | ACGT | 1 cut(s) | 91 |
| MboII | GAAGA | 4 cut(s) | 11, 185, 295, 521 |
| MfeI | CAATTG | 1 cut(s) | 321 |
| MhlI | GDGCHC | 1 cut(s) | 126 |
| MluCI | AATT | 2 cut(s) | 209, 321 |
| Mly113I | GGCGCC | 1 cut(s) | 352 |
| MlyI | GAGTC | 1 cut(s) | 419 |
| MnlI | CCTC | 6 cut(s) | 27, 58, 245, 263, 397, 466 |
| Mph1103I | ATGCAT | 1 cut(s) | 222 |
| MseI | TTAA | 2 cut(s) | 75, 443 |
| MslI | CAYNNNNRTG | 2 cut(s) | 35, 90 |
| MspI | CCGG | 1 cut(s) | 362 |
| MunI | CAATTG | 1 cut(s) | 321 |
| Mva1269I | GAATGC | 2 cut(s) | 156, 412 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 358, 397 |
| NarI | GGCGCC | 1 cut(s) | 352 |
| NlaIII | CATG | 2 cut(s) | 224, 232 |
| NlaIV | GGNNCC | 5 cut(s) | 125, 353, 366, 378, 454 |
| NsiI | ATGCAT | 1 cut(s) | 222 |
| OliI | CACNNNNGTG | 1 cut(s) | 35 |
| PctI | GAATGC | 2 cut(s) | 156, 412 |
| PfeI | GAWTC | 3 cut(s) | 135, 293, 298 |
| PkrI | GCNGC | 2 cut(s) | 328, 356 |
| PleI | GAGTC | 1 cut(s) | 419 |
| PluTI | GGCGCC | 1 cut(s) | 355 |
| PpsI | GAGTC | 1 cut(s) | 419 |
| Ppu21I | YACGTR | 1 cut(s) | 92 |
| PpuMI | RGGWCCY | 1 cut(s) | 453 |
| Psp5II | RGGWCCY | 1 cut(s) | 453 |
| PspN4I | GGNNCC | 5 cut(s) | 125, 353, 366, 378, 454 |
| PspPI | GGNCC | 2 cut(s) | 364, 453 |
| PspPPI | RGGWCCY | 1 cut(s) | 453 |
| RseI | CAYNNNNRTG | 2 cut(s) | 35, 90 |
| SaqAI | TTAA | 2 cut(s) | 75, 443 |
| SatI | GCNGC | 2 cut(s) | 327, 355 |
| Sau96I | GGNCC | 2 cut(s) | 364, 453 |
| SchI | GAGTC | 1 cut(s) | 419 |
| SduI | GDGCHC | 1 cut(s) | 126 |
| SetI | ASST | 6 cut(s) | 19, 69, 94, 187, 289, 449 |
| SfaNI | GCATC | 1 cut(s) | 138 |
| SfoI | GGCGCC | 1 cut(s) | 353 |
| SinI | GGWCC | 2 cut(s) | 364, 453 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 35, 90 |
| SmlI | CTYRAG | 1 cut(s) | 457 |
| SmoI | CTYRAG | 1 cut(s) | 457 |
| Sse9I | AATT | 2 cut(s) | 209, 321 |
| SsiI | CCGC | 2 cut(s) | 338, 355 |
| SspDI | GGCGCC | 1 cut(s) | 351 |
| SspMI | CTAG | 2 cut(s) | 132, 288 |
| StyI | CCWWGG | 2 cut(s) | 392, 464 |
| TaaI | ACNGT | 3 cut(s) | 34, 191, 333 |
| TaiI | ACGT | 1 cut(s) | 94 |
| TaqI | TCGA | 2 cut(s) | 250, 296 |
| TasI | AATT | 2 cut(s) | 209, 321 |
| TauI | GCSGC | 1 cut(s) | 357 |
| TfiI | GAWTC | 3 cut(s) | 135, 293, 298 |
| Tru1I | TTAA | 2 cut(s) | 75, 443 |
| Tru9I | TTAA | 2 cut(s) | 75, 443 |
| TscAI | CASTG | 2 cut(s) | 37, 280 |
| TseI | GCWGC | 1 cut(s) | 326 |
| TspDTI | ATGAA | 1 cut(s) | 96 |
| TspRI | CASTG | 2 cut(s) | 37, 280 |
| VpaK11BI | GGWCC | 2 cut(s) | 364, 453 |
| XapI | RAATTY | 1 cut(s) | 209 |
| XspI | CTAG | 2 cut(s) | 132, 288 |
| Zsp2I | ATGCAT | 1 cut(s) | 222 |