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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 565 |
| AccIII | TCCGGA | 1 cut(s) | 394 |
| AciI | CCGC | 1 cut(s) | 743 |
| AcoI | YGGCCR | 1 cut(s) | 126 |
| AcsI | RAATTY | 2 cut(s) | 41, 670 |
| AcuI | CTGAAG | 1 cut(s) | 593 |
| AcyI | GRCGYC | 1 cut(s) | 562 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 730 |
| AgsI | TTSAA | 1 cut(s) | 329 |
| AjnI | CCWGG | 1 cut(s) | 403 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 552, 584 |
| AluBI | AGCT | 2 cut(s) | 38, 748 |
| AluI | AGCT | 2 cut(s) | 38, 748 |
| Alw26I | GTCTC | 2 cut(s) | 141, 575 |
| Ama87I | CYCGRG | 1 cut(s) | 483 |
| Aor13HI | TCCGGA | 1 cut(s) | 394 |
| AoxI | GGCC | 3 cut(s) | 14, 79, 126 |
| ApeKI | GCWGC | 2 cut(s) | 164, 748 |
| ApoI | RAATTY | 2 cut(s) | 41, 670 |
| AseI | ATTAAT | 1 cut(s) | 609 |
| AspS9I | GGNCC | 3 cut(s) | 79, 242, 425 |
| AsuHPI | GGTGA | 2 cut(s) | 692, 715 |
| AvaI | CYCGRG | 1 cut(s) | 483 |
| AvaII | GGWCC | 2 cut(s) | 242, 425 |
| BauI | CACGAG | 1 cut(s) | 758 |
| BbvCI | CCTCAGC | 1 cut(s) | 156 |
| BbvI | GCAGC | 2 cut(s) | 151, 735 |
| BciT130I | CCWGG | 1 cut(s) | 405 |
| BciVI | GTATCC | 1 cut(s) | 731 |
| BclI | TGATCA | 1 cut(s) | 223 |
| BcoDI | GTCTC | 2 cut(s) | 141, 575 |
| BfmI | CTRYAG | 1 cut(s) | 513 |
| BfuI | GTATCC | 1 cut(s) | 731 |
| BglII | AGATCT | 2 cut(s) | 89, 412 |
| BisI | GCNGC | 2 cut(s) | 165, 749 |
| BlsI | GCNGC | 2 cut(s) | 166, 750 |
| Bme1390I | CCNGG | 1 cut(s) | 405 |
| Bme18I | GGWCC | 2 cut(s) | 242, 425 |
| BmeT110I | CYCGRG | 1 cut(s) | 483 |
| BmgT120I | GGNCC | 3 cut(s) | 79, 242, 425 |
| BmiI | GGNNCC | 3 cut(s) | 80, 243, 432 |
| BmrFI | CCNGG | 1 cut(s) | 405 |
| BmsI | GCATC | 5 cut(s) | 142, 184, 453, 625, 696 |
| BpmI | CTGGAG | 2 cut(s) | 257, 734 |
| Bpu10I | CCTNAGC | 1 cut(s) | 156 |
| BsaBI | GATNNNNATC | 1 cut(s) | 329 |
| BsaHI | GRCGYC | 1 cut(s) | 562 |
| BsaI | GGTCTC | 1 cut(s) | 141 |
| BsaJI | CCNNGG | 2 cut(s) | 82, 484 |
| BsaWI | WCCGGW | 2 cut(s) | 394, 427 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 52, 82 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 730 |
| Bse1I | ACTGG | 1 cut(s) | 129 |
| Bse8I | GATNNNNATC | 1 cut(s) | 329 |
| BseAI | TCCGGA | 1 cut(s) | 394 |
| BseBI | CCWGG | 1 cut(s) | 405 |
| BseDI | CCNNGG | 2 cut(s) | 82, 484 |
| BseGI | GGATG | 1 cut(s) | 199 |
| BseJI | GATNNNNATC | 1 cut(s) | 329 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 730 |
| BseMII | CTCAG | 3 cut(s) | 84, 147, 282 |
| BseNI | ACTGG | 1 cut(s) | 129 |
| BseRI | GAGGAG | 2 cut(s) | 20, 173 |
| BseXI | GCAGC | 2 cut(s) | 151, 735 |
| BshFI | GGCC | 3 cut(s) | 16, 81, 128 |
| BsiHKCI | CYCGRG | 1 cut(s) | 483 |
| BsiSI | CCGG | 3 cut(s) | 299, 395, 428 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 730 |
| BsmAI | GTCTC | 2 cut(s) | 141, 575 |
| BsmI | GAATGC | 1 cut(s) | 109 |
| BsnI | GGCC | 3 cut(s) | 16, 81, 128 |
| Bso31I | GGTCTC | 1 cut(s) | 141 |
| BsoBI | CYCGRG | 1 cut(s) | 483 |
| Bsp13I | TCCGGA | 1 cut(s) | 394 |
| Bsp143I | GATC | 3 cut(s) | 89, 223, 412 |
| BspACI | CCGC | 1 cut(s) | 743 |
| BspANI | GGCC | 3 cut(s) | 16, 81, 128 |
| BspCNI | CTCAG | 3 cut(s) | 85, 148, 283 |
| BspEI | TCCGGA | 1 cut(s) | 394 |
| BspLI | GGNNCC | 3 cut(s) | 80, 243, 432 |
| BspMAI | CTGCAG | 1 cut(s) | 517 |
| BspTNI | GGTCTC | 1 cut(s) | 141 |
| BsrI | ACTGG | 1 cut(s) | 129 |
| BssECI | CCNNGG | 2 cut(s) | 82, 484 |
| BssMI | GATC | 3 cut(s) | 89, 223, 412 |
| BssNI | GRCGYC | 1 cut(s) | 562 |
| BssSI | CACGAG | 1 cut(s) | 758 |
| Bst2BI | CACGAG | 1 cut(s) | 758 |
| Bst2UI | CCWGG | 1 cut(s) | 405 |
| BstACI | GRCGYC | 1 cut(s) | 562 |
| BstDEI | CTNAG | 6 cut(s) | 32, 93, 156, 291, 336, 409 |
| BstF5I | GGATG | 1 cut(s) | 199 |
| BstKTI | GATC | 3 cut(s) | 92, 226, 415 |
| BstMAI | GTCTC | 2 cut(s) | 141, 575 |
| BstMBI | GATC | 3 cut(s) | 89, 223, 412 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 161 |
| BstNI | CCWGG | 1 cut(s) | 405 |
| BstSCI | CCNGG | 1 cut(s) | 403 |
| BstSFI | CTRYAG | 1 cut(s) | 513 |
| BstV1I | GCAGC | 2 cut(s) | 151, 735 |
| BstX2I | RGATCY | 2 cut(s) | 89, 412 |
| BstYI | RGATCY | 2 cut(s) | 89, 412 |
| BsuI | GTATCC | 1 cut(s) | 731 |
| BsuRI | GGCC | 3 cut(s) | 16, 81, 128 |
| BtsCI | GGATG | 1 cut(s) | 199 |
| BtsI | GCAGTG | 2 cut(s) | 510, 645 |
| BtsIMutI | CAGTG | 3 cut(s) | 136, 510, 645 |
| Cfr13I | GGNCC | 3 cut(s) | 79, 242, 425 |
| CviAII | CATG | 1 cut(s) | 270 |
| CviJI | RGCY | 9 cut(s) | 16, 38, 81, 128, 164, 298, 408, 433, 748 |
| CviKI_1 | RGCY | 9 cut(s) | 16, 38, 81, 128, 164, 298, 408, 433, 748 |
| DdeI | CTNAG | 6 cut(s) | 32, 93, 156, 291, 336, 409 |
| DpnI | GATC | 3 cut(s) | 91, 225, 414 |
| DpnII | GATC | 3 cut(s) | 89, 223, 412 |
| EaeI | YGGCCR | 1 cut(s) | 126 |
| Eco147I | AGGCCT | 1 cut(s) | 16 |
| Eco31I | GGTCTC | 1 cut(s) | 141 |
| Eco47I | GGWCC | 2 cut(s) | 242, 425 |
| Eco57I | CTGAAG | 1 cut(s) | 593 |
| Eco88I | CYCGRG | 1 cut(s) | 483 |
| EcoRII | CCWGG | 1 cut(s) | 403 |
| FaeI | CATG | 1 cut(s) | 273 |
| FaiI | YATR | 7 cut(s) | 52, 54, 116, 271, 533, 614, 692 |
| FatI | CATG | 1 cut(s) | 269 |
| FbaI | TGATCA | 1 cut(s) | 223 |
| Fnu4HI | GCNGC | 2 cut(s) | 165, 749 |
| FokI | GGATG | 1 cut(s) | 206 |
| Fsp4HI | GCNGC | 2 cut(s) | 165, 749 |
| GluI | GCNGC | 2 cut(s) | 165, 749 |
| GsuI | CTGGAG | 2 cut(s) | 257, 734 |
| HaeIII | GGCC | 3 cut(s) | 16, 81, 128 |
| HapII | CCGG | 3 cut(s) | 299, 395, 428 |
| Hin1I | GRCGYC | 1 cut(s) | 562 |
| Hin1II | CATG | 1 cut(s) | 273 |
| HinfI | GANTC | 5 cut(s) | 122, 477, 519, 583, 629 |
| HpaII | CCGG | 3 cut(s) | 299, 395, 428 |
| HphI | GGTGA | 2 cut(s) | 692, 715 |
| Hpy166II | GTNNAC | 5 cut(s) | 179, 425, 510, 653, 683 |
| Hpy188I | TCNGA | 5 cut(s) | 94, 151, 292, 573, 634 |
| Hpy188III | TCNNGA | 4 cut(s) | 236, 395, 483, 713 |
| Hpy8I | GTNNAC | 5 cut(s) | 179, 425, 510, 653, 683 |
| Hpy99I | CGWCG | 1 cut(s) | 567 |
| HpyAV | CCTTC | 5 cut(s) | 51, 568, 582, 616, 694 |
| HpyCH4IV | ACGT | 1 cut(s) | 562 |
| HpyCH4V | TGCA | 5 cut(s) | 107, 197, 273, 515, 638 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 161 |
| HpyF3I | CTNAG | 6 cut(s) | 32, 93, 156, 291, 336, 409 |
| HpySE526I | ACGT | 1 cut(s) | 562 |
| Hsp92I | GRCGYC | 1 cut(s) | 562 |
| Hsp92II | CATG | 1 cut(s) | 273 |
| Kpn2I | TCCGGA | 1 cut(s) | 394 |
| Ksp22I | TGATCA | 1 cut(s) | 223 |
| Kzo9I | GATC | 3 cut(s) | 89, 223, 412 |
| LmnI | GCTCC | 3 cut(s) | 397, 430, 745 |
| Lsp1109I | GCAGC | 2 cut(s) | 151, 735 |
| LweI | GCATC | 5 cut(s) | 142, 184, 453, 625, 696 |
| MaeII | ACGT | 1 cut(s) | 562 |
| MaeIII | GTNAC | 1 cut(s) | 228 |
| MalI | GATC | 3 cut(s) | 91, 225, 414 |
| MboI | GATC | 3 cut(s) | 89, 223, 412 |
| MboII | GAAGA | 6 cut(s) | 99, 183, 460, 604, 638, 679 |
| MflI | RGATCY | 2 cut(s) | 89, 412 |
| MluCI | AATT | 4 cut(s) | 41, 215, 606, 670 |
| MlyI | GAGTC | 1 cut(s) | 577 |
| MroI | TCCGGA | 1 cut(s) | 394 |
| MseI | TTAA | 5 cut(s) | 218, 248, 360, 504, 609 |
| MslI | CAYNNNNRTG | 1 cut(s) | 268 |
| MspI | CCGG | 3 cut(s) | 299, 395, 428 |
| MspR9I | CCNGG | 1 cut(s) | 405 |
| Mva1269I | GAATGC | 1 cut(s) | 109 |
| MvaI | CCWGG | 1 cut(s) | 405 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 161 |
| NdeII | GATC | 3 cut(s) | 89, 223, 412 |
| NlaIII | CATG | 1 cut(s) | 273 |
| NlaIV | GGNNCC | 3 cut(s) | 80, 243, 432 |
| NmeAIII | GCCGAG | 1 cut(s) | 107 |
| PceI | AGGCCT | 1 cut(s) | 16 |
| PctI | GAATGC | 1 cut(s) | 109 |
| PfeI | GAWTC | 4 cut(s) | 122, 477, 519, 629 |
| PkrI | GCNGC | 2 cut(s) | 166, 750 |
| PleI | GAGTC | 1 cut(s) | 577 |
| PpsI | GAGTC | 1 cut(s) | 577 |
| PshBI | ATTAAT | 1 cut(s) | 609 |
| Psp6I | CCWGG | 1 cut(s) | 403 |
| PspGI | CCWGG | 1 cut(s) | 403 |
| PspN4I | GGNNCC | 3 cut(s) | 80, 243, 432 |
| PspPI | GGNCC | 3 cut(s) | 79, 242, 425 |
| PstI | CTGCAG | 1 cut(s) | 517 |
| PsuI | RGATCY | 2 cut(s) | 89, 412 |
| RseI | CAYNNNNRTG | 1 cut(s) | 268 |
| SaqAI | TTAA | 5 cut(s) | 218, 248, 360, 504, 609 |
| SatI | GCNGC | 2 cut(s) | 165, 749 |
| Sau3AI | GATC | 3 cut(s) | 89, 223, 412 |
| Sau96I | GGNCC | 3 cut(s) | 79, 242, 425 |
| SchI | GAGTC | 1 cut(s) | 577 |
| ScrFI | CCNGG | 1 cut(s) | 405 |
| SfaNI | GCATC | 5 cut(s) | 142, 184, 453, 625, 696 |
| SfcI | CTRYAG | 1 cut(s) | 513 |
| SinI | GGWCC | 2 cut(s) | 242, 425 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 268 |
| Sse9I | AATT | 4 cut(s) | 41, 215, 606, 670 |
| SseBI | AGGCCT | 1 cut(s) | 16 |
| SsiI | CCGC | 1 cut(s) | 743 |
| SspI | AATATT | 1 cut(s) | 502 |
| StuI | AGGCCT | 1 cut(s) | 16 |
| StyD4I | CCNGG | 1 cut(s) | 403 |
| TaiI | ACGT | 1 cut(s) | 565 |
| TaqI | TCGA | 3 cut(s) | 169, 565, 586 |
| TaqII | GACCGA | 1 cut(s) | 129 |
| TasI | AATT | 4 cut(s) | 41, 215, 606, 670 |
| TfiI | GAWTC | 4 cut(s) | 122, 477, 519, 629 |
| Tru1I | TTAA | 5 cut(s) | 218, 248, 360, 504, 609 |
| Tru9I | TTAA | 5 cut(s) | 218, 248, 360, 504, 609 |
| TscAI | CASTG | 3 cut(s) | 136, 517, 645 |
| TseI | GCWGC | 2 cut(s) | 164, 748 |
| TspDTI | ATGAA | 1 cut(s) | 342 |
| TspRI | CASTG | 3 cut(s) | 136, 517, 645 |
| VpaK11BI | GGWCC | 2 cut(s) | 242, 425 |
| VspI | ATTAAT | 1 cut(s) | 609 |
| XapI | RAATTY | 2 cut(s) | 41, 670 |
| ZraI | GACGTC | 1 cut(s) | 563 |