ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 276 |
| AclWI | GGATC | 1 cut(s) | 272 |
| AcoI | YGGCCR | 1 cut(s) | 16 |
| AcsI | RAATTY | 1 cut(s) | 572 |
| AcuI | CTGAAG | 2 cut(s) | 267, 417 |
| AfaI | GTAC | 1 cut(s) | 375 |
| AfeI | AGCGCT | 1 cut(s) | 539 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 202 |
| AflII | CTTAAG | 2 cut(s) | 161, 268 |
| AgsI | TTSAA | 4 cut(s) | 236, 518, 526, 641 |
| AhlI | ACTAGT | 1 cut(s) | 499 |
| AjnI | CCWGG | 2 cut(s) | 101, 260 |
| AjuI | GAANNNNNNNTTGG | 5 cut(s) | 29, 66, 98, 596, 628 |
| AluBI | AGCT | 6 cut(s) | 132, 251, 299, 473, 550, 598 |
| AluI | AGCT | 6 cut(s) | 132, 251, 299, 473, 550, 598 |
| Alw21I | GWGCWC | 1 cut(s) | 134 |
| Alw26I | GTCTC | 3 cut(s) | 244, 654, 680 |
| AlwI | GGATC | 1 cut(s) | 272 |
| Aor51HI | AGCGCT | 1 cut(s) | 539 |
| AoxI | GGCC | 4 cut(s) | 16, 193, 385, 442 |
| ApeKI | GCWGC | 2 cut(s) | 89, 157 |
| ApoI | RAATTY | 1 cut(s) | 572 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 597 |
| AspA2I | CCTAGG | 1 cut(s) | 439 |
| AspLEI | GCGC | 2 cut(s) | 540, 720 |
| AspS9I | GGNCC | 3 cut(s) | 124, 278, 332 |
| AsuHPI | GGTGA | 4 cut(s) | 227, 479, 617, 677 |
| AvaII | GGWCC | 3 cut(s) | 124, 278, 332 |
| AvrII | CCTAGG | 1 cut(s) | 439 |
| BanII | GRGCYC | 1 cut(s) | 134 |
| BbsI | GAAGAC | 1 cut(s) | 514 |
| Bbv12I | GWGCWC | 1 cut(s) | 134 |
| BbvI | GCAGC | 2 cut(s) | 76, 144 |
| BccI | CCATC | 1 cut(s) | 149 |
| BceAI | ACGGC | 3 cut(s) | 3, 400, 696 |
| BciT130I | CCWGG | 2 cut(s) | 103, 262 |
| BclI | TGATCA | 1 cut(s) | 631 |
| BcoDI | GTCTC | 3 cut(s) | 244, 654, 680 |
| BcuI | ACTAGT | 1 cut(s) | 499 |
| BfaI | CTAG | 3 cut(s) | 93, 440, 500 |
| BfmI | CTRYAG | 1 cut(s) | 145 |
| BfoI | RGCGCY | 1 cut(s) | 541 |
| BfrI | CTTAAG | 2 cut(s) | 161, 268 |
| BisI | GCNGC | 2 cut(s) | 90, 158 |
| BlnI | CCTAGG | 1 cut(s) | 439 |
| BlsI | GCNGC | 2 cut(s) | 91, 159 |
| Bme1390I | CCNGG | 2 cut(s) | 103, 262 |
| Bme18I | GGWCC | 3 cut(s) | 124, 278, 332 |
| BmgT120I | GGNCC | 3 cut(s) | 124, 278, 332 |
| BmiI | GGNNCC | 2 cut(s) | 333, 334 |
| BmrFI | CCNGG | 2 cut(s) | 103, 262 |
| BmsI | GCATC | 2 cut(s) | 307, 425 |
| BpiI | GAAGAC | 1 cut(s) | 514 |
| Bpu10I | CCTNAGC | 1 cut(s) | 128 |
| BsaI | GGTCTC | 1 cut(s) | 680 |
| BsaJI | CCNNGG | 2 cut(s) | 281, 439 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 202 |
| BseBI | CCWGG | 2 cut(s) | 103, 262 |
| BseDI | CCNNGG | 2 cut(s) | 281, 439 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 202 |
| BseMII | CTCAG | 2 cut(s) | 119, 399 |
| BseRI | GAGGAG | 2 cut(s) | 165, 232 |
| BseXI | GCAGC | 2 cut(s) | 76, 144 |
| BseYI | CCCAGC | 1 cut(s) | 473 |
| BshFI | GGCC | 4 cut(s) | 18, 195, 387, 444 |
| BsiHKAI | GWGCWC | 1 cut(s) | 134 |
| BslFI | GGGAC | 1 cut(s) | 318 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 202 |
| BsmAI | GTCTC | 3 cut(s) | 244, 654, 680 |
| BsmFI | GGGAC | 1 cut(s) | 318 |
| BsnI | GGCC | 4 cut(s) | 18, 195, 387, 444 |
| Bso31I | GGTCTC | 1 cut(s) | 680 |
| Bsp1286I | GDGCHC | 1 cut(s) | 134 |
| Bsp143I | GATC | 6 cut(s) | 57, 79, 264, 345, 460, 631 |
| BspACI | CCGC | 1 cut(s) | 276 |
| BspANI | GGCC | 4 cut(s) | 18, 195, 387, 444 |
| BspCNI | CTCAG | 2 cut(s) | 120, 400 |
| BspLI | GGNNCC | 2 cut(s) | 333, 334 |
| BspMAI | CTGCAG | 1 cut(s) | 149 |
| BspPI | GGATC | 1 cut(s) | 272 |
| BspTI | CTTAAG | 2 cut(s) | 161, 268 |
| BspTNI | GGTCTC | 1 cut(s) | 680 |
| BssECI | CCNNGG | 2 cut(s) | 281, 439 |
| BssMI | GATC | 6 cut(s) | 57, 79, 264, 345, 460, 631 |
| BssT1I | CCWWGG | 2 cut(s) | 281, 439 |
| Bst2UI | CCWGG | 2 cut(s) | 103, 262 |
| Bst4CI | ACNGT | 1 cut(s) | 452 |
| BstAFI | CTTAAG | 2 cut(s) | 161, 268 |
| BstDEI | CTNAG | 3 cut(s) | 128, 408, 714 |
| BstEII | GGTNACC | 1 cut(s) | 623 |
| BstH2I | RGCGCY | 1 cut(s) | 541 |
| BstHHI | GCGC | 2 cut(s) | 540, 720 |
| BstKTI | GATC | 6 cut(s) | 60, 82, 267, 348, 463, 634 |
| BstMAI | GTCTC | 3 cut(s) | 244, 654, 680 |
| BstMBI | GATC | 6 cut(s) | 57, 79, 264, 345, 460, 631 |
| BstNI | CCWGG | 2 cut(s) | 103, 262 |
| BstPI | GGTNACC | 1 cut(s) | 623 |
| BstSCI | CCNGG | 2 cut(s) | 101, 260 |
| BstSFI | CTRYAG | 1 cut(s) | 145 |
| BstV1I | GCAGC | 2 cut(s) | 76, 144 |
| BstV2I | GAAGAC | 1 cut(s) | 514 |
| BstX2I | RGATCY | 1 cut(s) | 264 |
| BstYI | RGATCY | 1 cut(s) | 264 |
| BsuRI | GGCC | 4 cut(s) | 18, 195, 387, 444 |
| BtsI | GCAGTG | 1 cut(s) | 727 |
| BtsIMutI | CAGTG | 1 cut(s) | 727 |
| CfoI | GCGC | 2 cut(s) | 540, 720 |
| Cfr13I | GGNCC | 3 cut(s) | 124, 278, 332 |
| Csp6I | GTAC | 1 cut(s) | 374 |
| CviAII | CATG | 2 cut(s) | 635, 726 |
| CviQI | GTAC | 1 cut(s) | 374 |
| DdeI | CTNAG | 3 cut(s) | 128, 408, 714 |
| DpnI | GATC | 6 cut(s) | 59, 81, 266, 347, 462, 633 |
| DpnII | GATC | 6 cut(s) | 57, 79, 264, 345, 460, 631 |
| EaeI | YGGCCR | 1 cut(s) | 16 |
| Ecl136II | GAGCTC | 1 cut(s) | 132 |
| Eco130I | CCWWGG | 2 cut(s) | 281, 439 |
| Eco24I | GRGCYC | 1 cut(s) | 134 |
| Eco31I | GGTCTC | 1 cut(s) | 680 |
| Eco47I | GGWCC | 3 cut(s) | 124, 278, 332 |
| Eco47III | AGCGCT | 1 cut(s) | 539 |
| Eco53kI | GAGCTC | 1 cut(s) | 132 |
| Eco57I | CTGAAG | 2 cut(s) | 267, 417 |
| Eco91I | GGTNACC | 1 cut(s) | 623 |
| EcoICRI | GAGCTC | 1 cut(s) | 132 |
| EcoO109I | RGGNCCY | 1 cut(s) | 332 |
| EcoO65I | GGTNACC | 1 cut(s) | 623 |
| EcoRII | CCWGG | 2 cut(s) | 101, 260 |
| EcoT14I | CCWWGG | 2 cut(s) | 281, 439 |
| EcoT38I | GRGCYC | 1 cut(s) | 134 |
| ErhI | CCWWGG | 2 cut(s) | 281, 439 |
| FaeI | CATG | 2 cut(s) | 638, 729 |
| FaiI | YATR | 5 cut(s) | 404, 579, 591, 636, 727 |
| FaqI | GGGAC | 1 cut(s) | 318 |
| FatI | CATG | 2 cut(s) | 634, 725 |
| FbaI | TGATCA | 1 cut(s) | 631 |
| Fnu4HI | GCNGC | 2 cut(s) | 90, 158 |
| FriOI | GRGCYC | 1 cut(s) | 134 |
| Fsp4HI | GCNGC | 2 cut(s) | 90, 158 |
| FspBI | CTAG | 3 cut(s) | 93, 440, 500 |
| GlaI | GCGC | 2 cut(s) | 539, 719 |
| GluI | GCNGC | 2 cut(s) | 90, 158 |
| GsaI | CCCAGC | 1 cut(s) | 477 |
| HaeII | RGCGCY | 1 cut(s) | 541 |
| HaeIII | GGCC | 4 cut(s) | 18, 195, 387, 444 |
| HhaI | GCGC | 2 cut(s) | 540, 720 |
| Hin1II | CATG | 2 cut(s) | 638, 729 |
| Hin6I | GCGC | 2 cut(s) | 538, 718 |
| HinP1I | GCGC | 2 cut(s) | 538, 718 |
| HincII | GTYRAC | 1 cut(s) | 422 |
| HindII | GTYRAC | 1 cut(s) | 422 |
| HindIII | AAGCTT | 3 cut(s) | 297, 548, 596 |
| HinfI | GANTC | 1 cut(s) | 74 |
| HphI | GGTGA | 4 cut(s) | 227, 479, 617, 677 |
| Hpy166II | GTNNAC | 2 cut(s) | 382, 422 |
| Hpy188I | TCNGA | 3 cut(s) | 79, 247, 506 |
| Hpy188III | TCNNGA | 2 cut(s) | 71, 127 |
| Hpy8I | GTNNAC | 2 cut(s) | 382, 422 |
| HpyAV | CCTTC | 4 cut(s) | 178, 206, 212, 635 |
| HpyCH4III | ACNGT | 1 cut(s) | 452 |
| HpyCH4V | TGCA | 6 cut(s) | 26, 147, 320, 428, 651, 725 |
| HpyF3I | CTNAG | 3 cut(s) | 128, 408, 714 |
| Hsp92II | CATG | 2 cut(s) | 638, 729 |
| HspAI | GCGC | 2 cut(s) | 538, 718 |
| KflI | GGGWCCC | 1 cut(s) | 332 |
| Ksp22I | TGATCA | 1 cut(s) | 631 |
| Kzo9I | GATC | 6 cut(s) | 57, 79, 264, 345, 460, 631 |
| Lsp1109I | GCAGC | 2 cut(s) | 76, 144 |
| LweI | GCATC | 2 cut(s) | 307, 425 |
| MaeI | CTAG | 3 cut(s) | 93, 440, 500 |
| MaeIII | GTNAC | 1 cut(s) | 623 |
| MalI | GATC | 6 cut(s) | 59, 81, 266, 347, 462, 633 |
| MboI | GATC | 6 cut(s) | 57, 79, 264, 345, 460, 631 |
| MboII | GAAGA | 3 cut(s) | 17, 410, 514 |
| MfeI | CAATTG | 1 cut(s) | 357 |
| MflI | RGATCY | 1 cut(s) | 264 |
| MhlI | GDGCHC | 1 cut(s) | 134 |
| MluCI | AATT | 5 cut(s) | 357, 572, 604, 664, 699 |
| MmeI | TCCRAC | 1 cut(s) | 434 |
| MnlI | CCTC | 7 cut(s) | 43, 44, 143, 146, 253, 398, 403 |
| MroXI | GAANNNNTTC | 1 cut(s) | 597 |
| MseI | TTAA | 5 cut(s) | 162, 269, 485, 534, 552 |
| MspCI | CTTAAG | 2 cut(s) | 161, 268 |
| MspR9I | CCNGG | 2 cut(s) | 103, 262 |
| MunI | CAATTG | 1 cut(s) | 357 |
| MvaI | CCWGG | 2 cut(s) | 103, 262 |
| NdeII | GATC | 6 cut(s) | 57, 79, 264, 345, 460, 631 |
| NlaIII | CATG | 2 cut(s) | 638, 729 |
| NlaIV | GGNNCC | 2 cut(s) | 333, 334 |
| NmuCI | GTSAC | 1 cut(s) | 623 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 42 |
| PdmI | GAANNNNTTC | 1 cut(s) | 597 |
| PfeI | GAWTC | 1 cut(s) | 74 |
| PfoI | TCCNGGA | 1 cut(s) | 260 |
| PkrI | GCNGC | 2 cut(s) | 91, 159 |
| PpuMI | RGGWCCY | 1 cut(s) | 332 |
| Psp124BI | GAGCTC | 1 cut(s) | 134 |
| Psp5II | RGGWCCY | 1 cut(s) | 332 |
| Psp6I | CCWGG | 2 cut(s) | 101, 260 |
| PspEI | GGTNACC | 1 cut(s) | 623 |
| PspFI | CCCAGC | 1 cut(s) | 473 |
| PspGI | CCWGG | 2 cut(s) | 101, 260 |
| PspN4I | GGNNCC | 2 cut(s) | 333, 334 |
| PspPI | GGNCC | 3 cut(s) | 124, 278, 332 |
| PspPPI | RGGWCCY | 1 cut(s) | 332 |
| PstI | CTGCAG | 1 cut(s) | 149 |
| PsuI | RGATCY | 1 cut(s) | 264 |
| RsaI | GTAC | 1 cut(s) | 375 |
| RsaNI | GTAC | 1 cut(s) | 374 |
| SacI | GAGCTC | 1 cut(s) | 134 |
| SaqAI | TTAA | 5 cut(s) | 162, 269, 485, 534, 552 |
| SatI | GCNGC | 2 cut(s) | 90, 158 |
| Sau3AI | GATC | 6 cut(s) | 57, 79, 264, 345, 460, 631 |
| Sau96I | GGNCC | 3 cut(s) | 124, 278, 332 |
| ScrFI | CCNGG | 2 cut(s) | 103, 262 |
| SduI | GDGCHC | 1 cut(s) | 134 |
| SfaNI | GCATC | 2 cut(s) | 307, 425 |
| SfcI | CTRYAG | 1 cut(s) | 145 |
| SinI | GGWCC | 3 cut(s) | 124, 278, 332 |
| SmlI | CTYRAG | 2 cut(s) | 161, 268 |
| SmoI | CTYRAG | 2 cut(s) | 161, 268 |
| SpeI | ACTAGT | 1 cut(s) | 499 |
| Sse9I | AATT | 5 cut(s) | 357, 572, 604, 664, 699 |
| SsiI | CCGC | 1 cut(s) | 276 |
| SspMI | CTAG | 3 cut(s) | 93, 440, 500 |
| SstI | GAGCTC | 1 cut(s) | 134 |
| StyD4I | CCNGG | 2 cut(s) | 101, 260 |
| StyI | CCWWGG | 2 cut(s) | 281, 439 |
| TaaI | ACNGT | 1 cut(s) | 452 |
| TaqI | TCGA | 6 cut(s) | 60, 134, 199, 291, 344, 390 |
| TasI | AATT | 5 cut(s) | 357, 572, 604, 664, 699 |
| TfiI | GAWTC | 1 cut(s) | 74 |
| Tru1I | TTAA | 5 cut(s) | 162, 269, 485, 534, 552 |
| Tru9I | TTAA | 5 cut(s) | 162, 269, 485, 534, 552 |
| TscAI | CASTG | 1 cut(s) | 727 |
| TseFI | GTSAC | 1 cut(s) | 623 |
| TseI | GCWGC | 2 cut(s) | 89, 157 |
| Tsp45I | GTSAC | 1 cut(s) | 623 |
| TspDTI | ATGAA | 3 cut(s) | 594, 604, 606 |
| TspRI | CASTG | 1 cut(s) | 727 |
| Vha464I | CTTAAG | 2 cut(s) | 161, 268 |
| VpaK11BI | GGWCC | 3 cut(s) | 124, 278, 332 |
| XapI | RAATTY | 1 cut(s) | 572 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 109 |
| XmaJI | CCTAGG | 1 cut(s) | 439 |
| XmnI | GAANNNNTTC | 1 cut(s) | 597 |
| XspI | CTAG | 3 cut(s) | 93, 440, 500 |