ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 123 |
| Acc36I | ACCTGC | 1 cut(s) | 481 |
| AccB1I | GGYRCC | 1 cut(s) | 421 |
| AccI | GTMKAC | 1 cut(s) | 293 |
| AciI | CCGC | 7 cut(s) | 111, 320, 457, 525, 565, 568, 596 |
| AclWI | GGATC | 1 cut(s) | 769 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AcyI | GRCGYC | 1 cut(s) | 422 |
| AfaI | GTAC | 3 cut(s) | 208, 619, 775 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 564, 756 |
| AgsI | TTSAA | 2 cut(s) | 151, 895 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 372 |
| AhlI | ACTAGT | 1 cut(s) | 572 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 74, 106 |
| AluBI | AGCT | 3 cut(s) | 614, 710, 839 |
| AluI | AGCT | 3 cut(s) | 614, 710, 839 |
| Alw21I | GWGCWC | 1 cut(s) | 540 |
| Alw26I | GTCTC | 1 cut(s) | 168 |
| Alw44I | GTGCAC | 1 cut(s) | 536 |
| AlwI | GGATC | 1 cut(s) | 769 |
| Ama87I | CYCGRG | 1 cut(s) | 180 |
| AoxI | GGCC | 5 cut(s) | 327, 581, 842, 856, 943 |
| ApaLI | GTGCAC | 1 cut(s) | 536 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| AseI | ATTAAT | 1 cut(s) | 867 |
| AspLEI | GCGC | 3 cut(s) | 19, 37, 424 |
| AspS9I | GGNCC | 4 cut(s) | 411, 842, 856, 944 |
| AsuC2I | CCSGG | 2 cut(s) | 181, 182 |
| AsuHPI | GGTGA | 1 cut(s) | 460 |
| AvaI | CYCGRG | 1 cut(s) | 180 |
| AvaII | GGWCC | 1 cut(s) | 411 |
| BaeGI | GKGCMC | 2 cut(s) | 540, 924 |
| BanI | GGYRCC | 1 cut(s) | 421 |
| BauI | CACGAG | 1 cut(s) | 246 |
| Bbv12I | GWGCWC | 1 cut(s) | 540 |
| BccI | CCATC | 3 cut(s) | 133, 310, 805 |
| BceAI | ACGGC | 2 cut(s) | 216, 578 |
| BcnI | CCSGG | 2 cut(s) | 181, 182 |
| BcoDI | GTCTC | 1 cut(s) | 168 |
| BcuI | ACTAGT | 1 cut(s) | 572 |
| BfaI | CTAG | 1 cut(s) | 573 |
| BfoI | RGCGCY | 2 cut(s) | 20, 425 |
| BfuAI | ACCTGC | 1 cut(s) | 481 |
| BisI | GCNGC | 2 cut(s) | 566, 597 |
| BlsI | GCNGC | 2 cut(s) | 567, 598 |
| BmcAI | AGTACT | 1 cut(s) | 775 |
| Bme1390I | CCNGG | 2 cut(s) | 181, 182 |
| Bme18I | GGWCC | 1 cut(s) | 411 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 372 |
| BmeT110I | CYCGRG | 1 cut(s) | 180 |
| BmgT120I | GGNCC | 4 cut(s) | 411, 842, 856, 944 |
| BmiI | GGNNCC | 4 cut(s) | 270, 423, 639, 946 |
| BmrFI | CCNGG | 2 cut(s) | 181, 182 |
| BmsI | GCATC | 3 cut(s) | 271, 444, 941 |
| Bpu10I | CCTNAGC | 1 cut(s) | 684 |
| BpuMI | CCSGG | 2 cut(s) | 181, 182 |
| BsaHI | GRCGYC | 1 cut(s) | 422 |
| BsaJI | CCNNGG | 3 cut(s) | 179, 180, 181 |
| BsaWI | WCCGGW | 1 cut(s) | 440 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 564, 756 |
| Bse118I | RCCGGY | 1 cut(s) | 583 |
| Bse1I | ACTGG | 2 cut(s) | 192, 368 |
| Bse3DI | GCAATG | 1 cut(s) | 505 |
| BseDI | CCNNGG | 3 cut(s) | 179, 180, 181 |
| BseGI | GGATG | 5 cut(s) | 321, 377, 459, 481, 553 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 564, 756 |
| BseMI | GCAATG | 1 cut(s) | 505 |
| BseMII | CTCAG | 1 cut(s) | 635 |
| BseNI | ACTGG | 2 cut(s) | 192, 368 |
| BseRI | GAGGAG | 2 cut(s) | 485, 803 |
| BseSI | GKGCMC | 2 cut(s) | 540, 924 |
| BseYI | CCCAGC | 1 cut(s) | 839 |
| Bsh1285I | CGRYCG | 3 cut(s) | 226, 341, 461 |
| BshFI | GGCC | 5 cut(s) | 329, 583, 844, 858, 945 |
| BshNI | GGYRCC | 1 cut(s) | 421 |
| BsiEI | CGRYCG | 3 cut(s) | 226, 341, 461 |
| BsiHKAI | GWGCWC | 1 cut(s) | 540 |
| BsiHKCI | CYCGRG | 1 cut(s) | 180 |
| BsiSI | CCGG | 4 cut(s) | 181, 425, 441, 584 |
| BslFI | GGGAC | 1 cut(s) | 157 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 564, 756 |
| BsmAI | GTCTC | 1 cut(s) | 168 |
| BsmFI | GGGAC | 1 cut(s) | 157 |
| BsnI | GGCC | 5 cut(s) | 329, 583, 844, 858, 945 |
| BsoBI | CYCGRG | 1 cut(s) | 180 |
| Bsp1286I | GDGCHC | 2 cut(s) | 540, 924 |
| Bsp143I | GATC | 4 cut(s) | 64, 223, 256, 761 |
| BspACI | CCGC | 7 cut(s) | 111, 320, 457, 525, 565, 568, 596 |
| BspANI | GGCC | 5 cut(s) | 329, 583, 844, 858, 945 |
| BspCNI | CTCAG | 1 cut(s) | 634 |
| BspLI | GGNNCC | 4 cut(s) | 270, 423, 639, 946 |
| BspMI | ACCTGC | 1 cut(s) | 481 |
| BspPI | GGATC | 1 cut(s) | 769 |
| BspQI | GCTCTTC | 1 cut(s) | 342 |
| BspT107I | GGYRCC | 1 cut(s) | 421 |
| BsrDI | GCAATG | 1 cut(s) | 505 |
| BsrFI | RCCGGY | 1 cut(s) | 583 |
| BsrI | ACTGG | 2 cut(s) | 192, 368 |
| BssAI | RCCGGY | 1 cut(s) | 583 |
| BssECI | CCNNGG | 3 cut(s) | 179, 180, 181 |
| BssMI | GATC | 4 cut(s) | 64, 223, 256, 761 |
| BssNI | GRCGYC | 1 cut(s) | 422 |
| BssSI | CACGAG | 1 cut(s) | 246 |
| Bst2BI | CACGAG | 1 cut(s) | 246 |
| Bst4CI | ACNGT | 1 cut(s) | 276 |
| Bst6I | CTCTTC | 1 cut(s) | 342 |
| BstACI | GRCGYC | 1 cut(s) | 422 |
| BstC8I | GCNNGC | 8 cut(s) | 15, 189, 327, 406, 585, 652, 681, 806 |
| BstDEI | CTNAG | 3 cut(s) | 621, 684, 912 |
| BstF5I | GGATG | 5 cut(s) | 321, 377, 459, 481, 553 |
| BstH2I | RGCGCY | 2 cut(s) | 20, 425 |
| BstHHI | GCGC | 3 cut(s) | 19, 37, 424 |
| BstKTI | GATC | 4 cut(s) | 67, 226, 259, 764 |
| BstMAI | GTCTC | 1 cut(s) | 168 |
| BstMBI | GATC | 4 cut(s) | 64, 223, 256, 761 |
| BstMCI | CGRYCG | 3 cut(s) | 226, 341, 461 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 326, 593, 801, 951 |
| BstSCI | CCNGG | 2 cut(s) | 179, 180 |
| BstSLI | GKGCMC | 2 cut(s) | 540, 924 |
| BstX2I | RGATCY | 1 cut(s) | 761 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 932 |
| BstYI | RGATCY | 1 cut(s) | 761 |
| BsuRI | GGCC | 5 cut(s) | 329, 583, 844, 858, 945 |
| BtsCI | GGATG | 5 cut(s) | 321, 377, 459, 481, 553 |
| BtsIMutI | CAGTG | 2 cut(s) | 199, 779 |
| BveI | ACCTGC | 1 cut(s) | 481 |
| Cac8I | GCNNGC | 8 cut(s) | 15, 189, 327, 406, 585, 652, 681, 806 |
| CfoI | GCGC | 3 cut(s) | 19, 37, 424 |
| Cfr10I | RCCGGY | 1 cut(s) | 583 |
| Cfr13I | GGNCC | 4 cut(s) | 411, 842, 856, 944 |
| Cfr9I | CCCGGG | 1 cut(s) | 180 |
| Csp6I | GTAC | 3 cut(s) | 207, 618, 774 |
| CviAII | CATG | 4 cut(s) | 505, 668, 860, 885 |
| CviQI | GTAC | 3 cut(s) | 207, 618, 774 |
| DdeI | CTNAG | 3 cut(s) | 621, 684, 912 |
| DinI | GGCGCC | 1 cut(s) | 423 |
| DpnI | GATC | 4 cut(s) | 66, 225, 258, 763 |
| DpnII | GATC | 4 cut(s) | 64, 223, 256, 761 |
| DriI | GACNNNNNGTC | 1 cut(s) | 372 |
| Eam1104I | CTCTTC | 1 cut(s) | 342 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 372 |
| EarI | CTCTTC | 1 cut(s) | 342 |
| EciI | GGCGGA | 2 cut(s) | 335, 583 |
| Eco47I | GGWCC | 1 cut(s) | 411 |
| Eco88I | CYCGRG | 1 cut(s) | 180 |
| EcoO109I | RGGNCCY | 1 cut(s) | 944 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EgeI | GGCGCC | 1 cut(s) | 423 |
| EheI | GGCGCC | 1 cut(s) | 423 |
| FaeI | CATG | 4 cut(s) | 508, 671, 863, 888 |
| FaqI | GGGAC | 1 cut(s) | 157 |
| FatI | CATG | 4 cut(s) | 504, 667, 859, 884 |
| FblI | GTMKAC | 1 cut(s) | 293 |
| Fnu4HI | GCNGC | 2 cut(s) | 566, 597 |
| FokI | GGATG | 5 cut(s) | 328, 384, 466, 488, 560 |
| Fsp4HI | GCNGC | 2 cut(s) | 566, 597 |
| FspBI | CTAG | 1 cut(s) | 573 |
| GlaI | GCGC | 3 cut(s) | 18, 36, 423 |
| GluI | GCNGC | 2 cut(s) | 566, 597 |
| GsaI | CCCAGC | 1 cut(s) | 843 |
| HaeII | RGCGCY | 2 cut(s) | 20, 425 |
| HaeIII | GGCC | 5 cut(s) | 329, 583, 844, 858, 945 |
| HapII | CCGG | 4 cut(s) | 181, 425, 441, 584 |
| HhaI | GCGC | 3 cut(s) | 19, 37, 424 |
| Hin1I | GRCGYC | 1 cut(s) | 422 |
| Hin1II | CATG | 4 cut(s) | 508, 671, 863, 888 |
| Hin6I | GCGC | 3 cut(s) | 17, 35, 422 |
| HinP1I | GCGC | 3 cut(s) | 17, 35, 422 |
| HincII | GTYRAC | 3 cut(s) | 294, 745, 823 |
| HindII | GTYRAC | 3 cut(s) | 294, 745, 823 |
| HinfI | GANTC | 4 cut(s) | 515, 601, 664, 966 |
| HpaI | GTTAAC | 1 cut(s) | 745 |
| HpaII | CCGG | 4 cut(s) | 181, 425, 441, 584 |
| HphI | GGTGA | 1 cut(s) | 460 |
| Hpy166II | GTNNAC | 4 cut(s) | 294, 538, 745, 823 |
| Hpy188I | TCNGA | 5 cut(s) | 8, 55, 228, 463, 751 |
| Hpy188III | TCNNGA | 2 cut(s) | 246, 623 |
| Hpy8I | GTNNAC | 4 cut(s) | 294, 538, 745, 823 |
| Hpy99I | CGWCG | 1 cut(s) | 298 |
| HpyAV | CCTTC | 6 cut(s) | 3, 145, 250, 297, 811, 889 |
| HpyCH4III | ACNGT | 1 cut(s) | 276 |
| HpyCH4IV | ACGT | 1 cut(s) | 851 |
| HpyCH4V | TGCA | 2 cut(s) | 538, 631 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 326, 593, 801, 951 |
| HpyF3I | CTNAG | 3 cut(s) | 621, 684, 912 |
| HpySE526I | ACGT | 1 cut(s) | 851 |
| Hsp92I | GRCGYC | 1 cut(s) | 422 |
| Hsp92II | CATG | 4 cut(s) | 508, 671, 863, 888 |
| HspAI | GCGC | 3 cut(s) | 17, 35, 422 |
| KasI | GGCGCC | 1 cut(s) | 421 |
| KroI | GCCGGC | 1 cut(s) | 583 |
| KroNI | GCCGGC | 1 cut(s) | 585 |
| KspAI | GTTAAC | 1 cut(s) | 745 |
| Kzo9I | GATC | 4 cut(s) | 64, 223, 256, 761 |
| LguI | GCTCTTC | 1 cut(s) | 342 |
| LmnI | GCTCC | 2 cut(s) | 322, 707 |
| LweI | GCATC | 3 cut(s) | 271, 444, 941 |
| MaeI | CTAG | 1 cut(s) | 573 |
| MaeII | ACGT | 1 cut(s) | 851 |
| MaeIII | GTNAC | 2 cut(s) | 196, 575 |
| MalI | GATC | 4 cut(s) | 66, 225, 258, 763 |
| MboI | GATC | 4 cut(s) | 64, 223, 256, 761 |
| MboII | GAAGA | 1 cut(s) | 359 |
| MflI | RGATCY | 1 cut(s) | 761 |
| MhlI | GDGCHC | 2 cut(s) | 540, 924 |
| MluCI | AATT | 6 cut(s) | 428, 626, 642, 659, 714, 731 |
| Mly113I | GGCGCC | 1 cut(s) | 422 |
| MlyI | GAGTC | 2 cut(s) | 658, 960 |
| MmeI | TCCRAC | 2 cut(s) | 33, 441 |
| MroNI | GCCGGC | 1 cut(s) | 583 |
| MseI | TTAA | 3 cut(s) | 674, 744, 867 |
| MslI | CAYNNNNRTG | 2 cut(s) | 809, 930 |
| MspI | CCGG | 4 cut(s) | 181, 425, 441, 584 |
| MspR9I | CCNGG | 2 cut(s) | 181, 182 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 326, 593, 801, 951 |
| NaeI | GCCGGC | 1 cut(s) | 585 |
| NarI | GGCGCC | 1 cut(s) | 422 |
| NciI | CCSGG | 2 cut(s) | 181, 182 |
| NdeII | GATC | 4 cut(s) | 64, 223, 256, 761 |
| NgoMIV | GCCGGC | 1 cut(s) | 583 |
| NlaIII | CATG | 4 cut(s) | 508, 671, 863, 888 |
| NlaIV | GGNNCC | 4 cut(s) | 270, 423, 639, 946 |
| NmuCI | GTSAC | 2 cut(s) | 196, 575 |
| PciSI | GCTCTTC | 1 cut(s) | 342 |
| PdiI | GCCGGC | 1 cut(s) | 585 |
| PfeI | GAWTC | 2 cut(s) | 515, 601 |
| PkrI | GCNGC | 2 cut(s) | 567, 598 |
| Ple19I | CGATCG | 1 cut(s) | 226 |
| PleI | GAGTC | 2 cut(s) | 658, 960 |
| PluTI | GGCGCC | 1 cut(s) | 425 |
| PpsI | GAGTC | 2 cut(s) | 658, 960 |
| PshBI | ATTAAT | 1 cut(s) | 867 |
| PsiI | TTATAA | 1 cut(s) | 123 |
| PspFI | CCCAGC | 1 cut(s) | 839 |
| PspN4I | GGNNCC | 4 cut(s) | 270, 423, 639, 946 |
| PspPI | GGNCC | 4 cut(s) | 411, 842, 856, 944 |
| PsuI | RGATCY | 1 cut(s) | 761 |
| PvuI | CGATCG | 1 cut(s) | 226 |
| RsaI | GTAC | 3 cut(s) | 208, 619, 775 |
| RsaNI | GTAC | 3 cut(s) | 207, 618, 774 |
| RseI | CAYNNNNRTG | 2 cut(s) | 809, 930 |
| SalI | GTCGAC | 1 cut(s) | 292 |
| SapI | GCTCTTC | 1 cut(s) | 342 |
| SaqAI | TTAA | 3 cut(s) | 674, 744, 867 |
| SatI | GCNGC | 2 cut(s) | 566, 597 |
| Sau3AI | GATC | 4 cut(s) | 64, 223, 256, 761 |
| Sau96I | GGNCC | 4 cut(s) | 411, 842, 856, 944 |
| ScaI | AGTACT | 1 cut(s) | 775 |
| SchI | GAGTC | 2 cut(s) | 658, 960 |
| ScrFI | CCNGG | 2 cut(s) | 181, 182 |
| SduI | GDGCHC | 2 cut(s) | 540, 924 |
| SfaNI | GCATC | 3 cut(s) | 271, 444, 941 |
| SfoI | GGCGCC | 1 cut(s) | 423 |
| SinI | GGWCC | 1 cut(s) | 411 |
| SmaI | CCCGGG | 1 cut(s) | 182 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 809, 930 |
| SpeI | ACTAGT | 1 cut(s) | 572 |
| Sse9I | AATT | 6 cut(s) | 428, 626, 642, 659, 714, 731 |
| SsiI | CCGC | 7 cut(s) | 111, 320, 457, 525, 565, 568, 596 |
| SspDI | GGCGCC | 1 cut(s) | 421 |
| SspMI | CTAG | 1 cut(s) | 573 |
| StyD4I | CCNGG | 2 cut(s) | 179, 180 |
| TaaI | ACNGT | 1 cut(s) | 276 |
| TaiI | ACGT | 1 cut(s) | 854 |
| TaqI | TCGA | 3 cut(s) | 259, 293, 376 |
| TaqII | GACCGA | 1 cut(s) | 355 |
| TasI | AATT | 6 cut(s) | 428, 626, 642, 659, 714, 731 |
| TatI | WGTACW | 2 cut(s) | 206, 773 |
| TauI | GCSGC | 2 cut(s) | 568, 599 |
| TfiI | GAWTC | 2 cut(s) | 515, 601 |
| Tru1I | TTAA | 3 cut(s) | 674, 744, 867 |
| Tru9I | TTAA | 3 cut(s) | 674, 744, 867 |
| TscAI | CASTG | 2 cut(s) | 199, 786 |
| TseFI | GTSAC | 2 cut(s) | 196, 575 |
| Tsp45I | GTSAC | 2 cut(s) | 196, 575 |
| TspDTI | ATGAA | 1 cut(s) | 492 |
| TspGWI | ACGGA | 2 cut(s) | 311, 753 |
| TspMI | CCCGGG | 1 cut(s) | 180 |
| TspRI | CASTG | 2 cut(s) | 199, 786 |
| VneI | GTGCAC | 1 cut(s) | 536 |
| VpaK11BI | GGWCC | 1 cut(s) | 411 |
| VspI | ATTAAT | 1 cut(s) | 867 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XmaI | CCCGGG | 1 cut(s) | 180 |
| XmiI | GTMKAC | 1 cut(s) | 293 |
| XspI | CTAG | 1 cut(s) | 573 |
| ZrmI | AGTACT | 1 cut(s) | 775 |