Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 613 |
| AccB1I | GGYRCC | 2 cut(s) | 351, 613 |
| AclWI | GGATC | 2 cut(s) | 634, 647 |
| AcuI | CTGAAG | 1 cut(s) | 449 |
| AcyI | GRCGYC | 1 cut(s) | 352 |
| AfaI | GTAC | 2 cut(s) | 235, 615 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 285, 649 |
| AgsI | TTSAA | 1 cut(s) | 622 |
| AjnI | CCWGG | 2 cut(s) | 283, 354 |
| AluBI | AGCT | 1 cut(s) | 393 |
| AluI | AGCT | 1 cut(s) | 393 |
| Alw21I | GWGCWC | 1 cut(s) | 301 |
| Alw26I | GTCTC | 2 cut(s) | 215, 445 |
| Alw44I | GTGCAC | 1 cut(s) | 297 |
| AlwI | GGATC | 2 cut(s) | 634, 647 |
| AoxI | GGCC | 3 cut(s) | 26, 62, 120 |
| ApaLI | GTGCAC | 1 cut(s) | 297 |
| ApeKI | GCWGC | 3 cut(s) | 173, 176, 179 |
| Asp718I | GGTACC | 1 cut(s) | 613 |
| AspLEI | GCGC | 2 cut(s) | 354, 361 |
| AsuHPI | GGTGA | 6 cut(s) | 16, 52, 88, 98, 110, 155 |
| BaeGI | GKGCMC | 2 cut(s) | 301, 405 |
| BamHI | GGATCC | 1 cut(s) | 639 |
| BanI | GGYRCC | 2 cut(s) | 351, 613 |
| BauI | CACGAG | 1 cut(s) | 456 |
| Bbv12I | GWGCWC | 1 cut(s) | 301 |
| BbvI | GCAGC | 3 cut(s) | 185, 188, 191 |
| BccI | CCATC | 5 cut(s) | 31, 89, 125, 200, 580 |
| BciT130I | CCWGG | 2 cut(s) | 285, 356 |
| BcoDI | GTCTC | 2 cut(s) | 215, 445 |
| BfoI | RGCGCY | 2 cut(s) | 355, 362 |
| BglII | AGATCT | 2 cut(s) | 331, 411 |
| BisI | GCNGC | 3 cut(s) | 174, 177, 180 |
| BlsI | GCNGC | 3 cut(s) | 175, 178, 181 |
| Bme1390I | CCNGG | 2 cut(s) | 285, 356 |
| BmiI | GGNNCC | 3 cut(s) | 353, 615, 641 |
| BmrFI | CCNGG | 2 cut(s) | 285, 356 |
| BmsI | GCATC | 1 cut(s) | 580 |
| Bpu10I | CCTNAGC | 1 cut(s) | 378 |
| BpuEI | CTTGAG | 1 cut(s) | 211 |
| BsaBI | GATNNNNATC | 1 cut(s) | 416 |
| BsaHI | GRCGYC | 1 cut(s) | 352 |
| BsaI | GGTCTC | 2 cut(s) | 215, 445 |
| BsaJI | CCNNGG | 4 cut(s) | 283, 284, 548, 594 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 285, 649 |
| Bse3DI | GCAATG | 1 cut(s) | 78 |
| Bse8I | GATNNNNATC | 1 cut(s) | 416 |
| BseBI | CCWGG | 2 cut(s) | 285, 356 |
| BseDI | CCNNGG | 4 cut(s) | 283, 284, 548, 594 |
| BseGI | GGATG | 2 cut(s) | 211, 595 |
| BseJI | GATNNNNATC | 1 cut(s) | 416 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 285, 649 |
| BseMI | GCAATG | 1 cut(s) | 78 |
| BseMII | CTCAG | 2 cut(s) | 173, 392 |
| BseRI | GAGGAG | 2 cut(s) | 243, 386 |
| BseSI | GKGCMC | 2 cut(s) | 301, 405 |
| BseXI | GCAGC | 3 cut(s) | 185, 188, 191 |
| BshFI | GGCC | 3 cut(s) | 28, 64, 122 |
| BshNI | GGYRCC | 2 cut(s) | 351, 613 |
| BsiHKAI | GWGCWC | 1 cut(s) | 301 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 285, 649 |
| BsmAI | GTCTC | 2 cut(s) | 215, 445 |
| BsnI | GGCC | 3 cut(s) | 28, 64, 122 |
| Bso31I | GGTCTC | 2 cut(s) | 215, 445 |
| Bsp1286I | GDGCHC | 2 cut(s) | 301, 405 |
| Bsp143I | GATC | 5 cut(s) | 331, 411, 417, 487, 639 |
| Bsp19I | CCATGG | 1 cut(s) | 548 |
| BspANI | GGCC | 3 cut(s) | 28, 64, 122 |
| BspCNI | CTCAG | 2 cut(s) | 172, 391 |
| BspHI | TCATGA | 1 cut(s) | 511 |
| BspLI | GGNNCC | 3 cut(s) | 353, 615, 641 |
| BspPI | GGATC | 2 cut(s) | 634, 647 |
| BspT107I | GGYRCC | 2 cut(s) | 351, 613 |
| BspTNI | GGTCTC | 2 cut(s) | 215, 445 |
| BsrDI | GCAATG | 1 cut(s) | 78 |
| BssECI | CCNNGG | 4 cut(s) | 283, 284, 548, 594 |
| BssMI | GATC | 5 cut(s) | 331, 411, 417, 487, 639 |
| BssNI | GRCGYC | 1 cut(s) | 352 |
| BssSI | CACGAG | 1 cut(s) | 456 |
| BssT1I | CCWWGG | 2 cut(s) | 548, 594 |
| Bst2BI | CACGAG | 1 cut(s) | 456 |
| Bst2UI | CCWGG | 2 cut(s) | 285, 356 |
| Bst4CI | ACNGT | 2 cut(s) | 238, 666 |
| BstACI | GRCGYC | 1 cut(s) | 352 |
| BstDEI | CTNAG | 2 cut(s) | 159, 378 |
| BstDSI | CCRYGG | 1 cut(s) | 548 |
| BstF5I | GGATG | 2 cut(s) | 211, 595 |
| BstH2I | RGCGCY | 2 cut(s) | 355, 362 |
| BstHHI | GCGC | 2 cut(s) | 354, 361 |
| BstKTI | GATC | 5 cut(s) | 334, 414, 420, 490, 642 |
| BstMAI | GTCTC | 2 cut(s) | 215, 445 |
| BstMBI | GATC | 5 cut(s) | 331, 411, 417, 487, 639 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 179, 358, 572 |
| BstNI | CCWGG | 2 cut(s) | 285, 356 |
| BstSCI | CCNGG | 2 cut(s) | 283, 354 |
| BstSLI | GKGCMC | 2 cut(s) | 301, 405 |
| BstV1I | GCAGC | 3 cut(s) | 185, 188, 191 |
| BstX2I | RGATCY | 3 cut(s) | 331, 411, 639 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 624 |
| BstYI | RGATCY | 3 cut(s) | 331, 411, 639 |
| BsuRI | GGCC | 3 cut(s) | 28, 64, 122 |
| BtgI | CCRYGG | 1 cut(s) | 548 |
| BtgZI | GCGATG | 3 cut(s) | 50, 108, 144 |
| BtsCI | GGATG | 2 cut(s) | 211, 595 |
| BtsIMutI | CAGTG | 1 cut(s) | 425 |
| CciI | TCATGA | 1 cut(s) | 511 |
| CfoI | GCGC | 2 cut(s) | 354, 361 |
| Csp6I | GTAC | 2 cut(s) | 234, 614 |
| CviAII | CATG | 4 cut(s) | 263, 512, 549, 648 |
| CviJI | RGCY | 7 cut(s) | 28, 64, 122, 377, 393, 543, 566 |
| CviKI_1 | RGCY | 7 cut(s) | 28, 64, 122, 377, 393, 543, 566 |
| CviQI | GTAC | 2 cut(s) | 234, 614 |
| DdeI | CTNAG | 2 cut(s) | 159, 378 |
| DinI | GGCGCC | 1 cut(s) | 353 |
| DpnI | GATC | 5 cut(s) | 333, 413, 419, 489, 641 |
| DpnII | GATC | 5 cut(s) | 331, 411, 417, 487, 639 |
| Eco130I | CCWWGG | 2 cut(s) | 548, 594 |
| Eco31I | GGTCTC | 2 cut(s) | 215, 445 |
| Eco57I | CTGAAG | 1 cut(s) | 449 |
| EcoRII | CCWGG | 2 cut(s) | 283, 354 |
| EcoT14I | CCWWGG | 2 cut(s) | 548, 594 |
| EgeI | GGCGCC | 1 cut(s) | 353 |
| EheI | GGCGCC | 1 cut(s) | 353 |
| ErhI | CCWWGG | 2 cut(s) | 548, 594 |
| FaeI | CATG | 4 cut(s) | 266, 515, 552, 651 |
| FaiI | YATR | 9 cut(s) | 195, 264, 408, 513, 519, 550, 649, 669, 671 |
| FatI | CATG | 4 cut(s) | 262, 511, 548, 647 |
| Fnu4HI | GCNGC | 3 cut(s) | 174, 177, 180 |
| FokI | GGATG | 2 cut(s) | 218, 602 |
| Fsp4HI | GCNGC | 3 cut(s) | 174, 177, 180 |
| GlaI | GCGC | 2 cut(s) | 353, 360 |
| GluI | GCNGC | 3 cut(s) | 174, 177, 180 |
| HaeII | RGCGCY | 2 cut(s) | 355, 362 |
| HaeIII | GGCC | 3 cut(s) | 28, 64, 122 |
| HhaI | GCGC | 2 cut(s) | 354, 361 |
| Hin1I | GRCGYC | 1 cut(s) | 352 |
| Hin1II | CATG | 4 cut(s) | 266, 515, 552, 651 |
| Hin6I | GCGC | 2 cut(s) | 352, 359 |
| HinP1I | GCGC | 2 cut(s) | 352, 359 |
| HindIII | AAGCTT | 1 cut(s) | 391 |
| HinfI | GANTC | 5 cut(s) | 7, 43, 101, 346, 687 |
| HphI | GGTGA | 6 cut(s) | 16, 52, 88, 98, 110, 155 |
| Hpy166II | GTNNAC | 2 cut(s) | 241, 299 |
| Hpy188III | TCNNGA | 4 cut(s) | 380, 415, 512, 637 |
| Hpy8I | GTNNAC | 2 cut(s) | 241, 299 |
| HpyAV | CCTTC | 3 cut(s) | 289, 380, 670 |
| HpyCH4III | ACNGT | 2 cut(s) | 238, 666 |
| HpyCH4V | TGCA | 6 cut(s) | 266, 299, 305, 575, 647, 659 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 179, 358, 572 |
| HpyF3I | CTNAG | 2 cut(s) | 159, 378 |
| Hsp92I | GRCGYC | 1 cut(s) | 352 |
| Hsp92II | CATG | 4 cut(s) | 266, 515, 552, 651 |
| HspAI | GCGC | 2 cut(s) | 352, 359 |
| KasI | GGCGCC | 1 cut(s) | 351 |
| KpnI | GGTACC | 1 cut(s) | 617 |
| Kzo9I | GATC | 5 cut(s) | 331, 411, 417, 487, 639 |
| Lsp1109I | GCAGC | 3 cut(s) | 185, 188, 191 |
| LweI | GCATC | 1 cut(s) | 580 |
| MaeIII | GTNAC | 2 cut(s) | 423, 460 |
| MalI | GATC | 5 cut(s) | 333, 413, 419, 489, 641 |
| MboI | GATC | 5 cut(s) | 331, 411, 417, 487, 639 |
| MboII | GAAGA | 8 cut(s) | 179, 341, 442, 445, 448, 451, 493, 496 |
| MflI | RGATCY | 3 cut(s) | 331, 411, 639 |
| MhlI | GDGCHC | 2 cut(s) | 301, 405 |
| MluCI | AATT | 2 cut(s) | 576, 622 |
| Mly113I | GGCGCC | 1 cut(s) | 352 |
| MlyI | GAGTC | 3 cut(s) | 16, 52, 110 |
| MmeI | TCCRAC | 6 cut(s) | 26, 34, 84, 92, 271, 456 |
| MseI | TTAA | 2 cut(s) | 396, 608 |
| MslI | CAYNNNNRTG | 1 cut(s) | 516 |
| MspR9I | CCNGG | 2 cut(s) | 285, 356 |
| MvaI | CCWGG | 2 cut(s) | 285, 356 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 179, 358, 572 |
| NarI | GGCGCC | 1 cut(s) | 352 |
| NcoI | CCATGG | 1 cut(s) | 548 |
| NdeII | GATC | 5 cut(s) | 331, 411, 417, 487, 639 |
| NlaIII | CATG | 4 cut(s) | 266, 515, 552, 651 |
| NlaIV | GGNNCC | 3 cut(s) | 353, 615, 641 |
| NmeAIII | GCCGAG | 1 cut(s) | 148 |
| NmuCI | GTSAC | 1 cut(s) | 423 |
| PagI | TCATGA | 1 cut(s) | 511 |
| PasI | CCCWGGG | 1 cut(s) | 284 |
| PfeI | GAWTC | 1 cut(s) | 346 |
| PkrI | GCNGC | 3 cut(s) | 175, 178, 181 |
| PleI | GAGTC | 3 cut(s) | 15, 51, 109 |
| PluTI | GGCGCC | 1 cut(s) | 355 |
| PpsI | GAGTC | 3 cut(s) | 15, 51, 109 |
| Psp6I | CCWGG | 2 cut(s) | 283, 354 |
| PspGI | CCWGG | 2 cut(s) | 283, 354 |
| PspN4I | GGNNCC | 3 cut(s) | 353, 615, 641 |
| PsuI | RGATCY | 3 cut(s) | 331, 411, 639 |
| RsaI | GTAC | 2 cut(s) | 235, 615 |
| RsaNI | GTAC | 2 cut(s) | 234, 614 |
| RseI | CAYNNNNRTG | 1 cut(s) | 516 |
| SaqAI | TTAA | 2 cut(s) | 396, 608 |
| SatI | GCNGC | 3 cut(s) | 174, 177, 180 |
| Sau3AI | GATC | 5 cut(s) | 331, 411, 417, 487, 639 |
| SchI | GAGTC | 3 cut(s) | 16, 52, 110 |
| ScrFI | CCNGG | 2 cut(s) | 285, 356 |
| SduI | GDGCHC | 2 cut(s) | 301, 405 |
| SetI | ASST | 5 cut(s) | 165, 253, 262, 395, 457 |
| SfaNI | GCATC | 1 cut(s) | 580 |
| SfoI | GGCGCC | 1 cut(s) | 353 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 516 |
| SmlI | CTYRAG | 1 cut(s) | 226 |
| SmoI | CTYRAG | 1 cut(s) | 226 |
| Sse9I | AATT | 2 cut(s) | 576, 622 |
| SspDI | GGCGCC | 1 cut(s) | 351 |
| StyD4I | CCNGG | 2 cut(s) | 283, 354 |
| StyI | CCWWGG | 2 cut(s) | 548, 594 |
| TaaI | ACNGT | 2 cut(s) | 238, 666 |
| TaqI | TCGA | 1 cut(s) | 416 |
| TasI | AATT | 2 cut(s) | 576, 622 |
| TfiI | GAWTC | 1 cut(s) | 346 |
| Tru1I | TTAA | 2 cut(s) | 396, 608 |
| Tru9I | TTAA | 2 cut(s) | 396, 608 |
| TscAI | CASTG | 1 cut(s) | 432 |
| TseFI | GTSAC | 1 cut(s) | 423 |
| TseI | GCWGC | 3 cut(s) | 173, 176, 179 |
| Tsp45I | GTSAC | 1 cut(s) | 423 |
| TspGWI | ACGGA | 1 cut(s) | 632 |
| TspRI | CASTG | 1 cut(s) | 432 |
| VneI | GTGCAC | 1 cut(s) | 297 |