Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 229 |
| AciI | CCGC | 3 cut(s) | 229, 937, 1047 |
| AclWI | GGATC | 6 cut(s) | 74, 335, 346, 461, 474, 560 |
| AcoI | YGGCCR | 2 cut(s) | 637, 1044 |
| AfaI | GTAC | 1 cut(s) | 752 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 329 |
| AgsI | TTSAA | 5 cut(s) | 586, 826, 1069, 1246, 1257 |
| AjiI | CACGTC | 1 cut(s) | 1205 |
| AjnI | CCWGG | 3 cut(s) | 42, 366, 666 |
| AluBI | AGCT | 3 cut(s) | 760, 1042, 1232 |
| AluI | AGCT | 3 cut(s) | 760, 1042, 1232 |
| Alw21I | GWGCWC | 1 cut(s) | 1355 |
| Alw26I | GTCTC | 2 cut(s) | 873, 887 |
| AlwI | GGATC | 6 cut(s) | 74, 335, 346, 461, 474, 560 |
| Ama87I | CYCGRG | 1 cut(s) | 787 |
| AoxI | GGCC | 3 cut(s) | 547, 637, 1044 |
| ApeKI | GCWGC | 1 cut(s) | 760 |
| AseI | ATTAAT | 2 cut(s) | 660, 977 |
| AspS9I | GGNCC | 1 cut(s) | 124 |
| AsuC2I | CCSGG | 3 cut(s) | 345, 968, 1278 |
| AsuHPI | GGTGA | 4 cut(s) | 356, 896, 1179, 1193 |
| AsuNHI | GCTAGC | 1 cut(s) | 1232 |
| AvaI | CYCGRG | 1 cut(s) | 787 |
| AvaII | GGWCC | 1 cut(s) | 124 |
| AxyI | CCTNAGG | 1 cut(s) | 503 |
| BaeGI | GKGCMC | 1 cut(s) | 1077 |
| BalI | TGGCCA | 1 cut(s) | 639 |
| BamHI | GGATCC | 1 cut(s) | 466 |
| BbsI | GAAGAC | 1 cut(s) | 722 |
| Bbv12I | GWGCWC | 1 cut(s) | 1355 |
| BbvI | GCAGC | 1 cut(s) | 747 |
| BccI | CCATC | 7 cut(s) | 248, 323, 479, 674, 705, 1085, 1367 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1285, 1319 |
| BciT130I | CCWGG | 3 cut(s) | 44, 368, 668 |
| BcnI | CCSGG | 3 cut(s) | 345, 968, 1278 |
| BcoDI | GTCTC | 2 cut(s) | 873, 887 |
| BfaI | CTAG | 6 cut(s) | 35, 59, 113, 269, 1113, 1233 |
| BfmI | CTRYAG | 1 cut(s) | 324 |
| BisI | GCNGC | 3 cut(s) | 761, 938, 1047 |
| BlsI | GCNGC | 3 cut(s) | 762, 939, 1048 |
| Bme1390I | CCNGG | 6 cut(s) | 44, 345, 368, 668, 968, 1278 |
| Bme18I | GGWCC | 1 cut(s) | 124 |
| BmeT110I | CYCGRG | 1 cut(s) | 787 |
| BmgBI | CACGTC | 1 cut(s) | 1205 |
| BmgT120I | GGNCC | 1 cut(s) | 124 |
| BmiI | GGNNCC | 3 cut(s) | 321, 468, 816 |
| BmrFI | CCNGG | 6 cut(s) | 44, 345, 368, 668, 968, 1278 |
| BmtI | GCTAGC | 1 cut(s) | 1236 |
| BpiI | GAAGAC | 1 cut(s) | 722 |
| BpuMI | CCSGG | 3 cut(s) | 345, 968, 1278 |
| Bsa29I | ATCGAT | 1 cut(s) | 339 |
| BsaBI | GATNNNNATC | 2 cut(s) | 54, 258 |
| BsaJI | CCNNGG | 3 cut(s) | 287, 344, 1158 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1013, 1043 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 329 |
| Bse1I | ACTGG | 2 cut(s) | 901, 951 |
| Bse21I | CCTNAGG | 1 cut(s) | 503 |
| Bse3DI | GCAATG | 1 cut(s) | 1384 |
| Bse8I | GATNNNNATC | 2 cut(s) | 54, 258 |
| BseBI | CCWGG | 3 cut(s) | 44, 368, 668 |
| BseCI | ATCGAT | 1 cut(s) | 339 |
| BseDI | CCNNGG | 3 cut(s) | 287, 344, 1158 |
| BseGI | GGATG | 3 cut(s) | 52, 259, 1378 |
| BseJI | GATNNNNATC | 2 cut(s) | 54, 258 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 329 |
| BseMI | GCAATG | 1 cut(s) | 1384 |
| BseMII | CTCAG | 5 cut(s) | 237, 500, 517, 542, 593 |
| BseNI | ACTGG | 2 cut(s) | 901, 951 |
| BseRI | GAGGAG | 2 cut(s) | 209, 1034 |
| BseSI | GKGCMC | 1 cut(s) | 1077 |
| BseXI | GCAGC | 1 cut(s) | 747 |
| BshFI | GGCC | 3 cut(s) | 549, 639, 1046 |
| BshVI | ATCGAT | 1 cut(s) | 339 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1355 |
| BsiHKCI | CYCGRG | 1 cut(s) | 787 |
| BsiSI | CCGG | 3 cut(s) | 344, 968, 1277 |
| BslFI | GGGAC | 1 cut(s) | 1215 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 329 |
| BsmAI | GTCTC | 2 cut(s) | 873, 887 |
| BsmBI | CGTCTC | 1 cut(s) | 873 |
| BsmFI | GGGAC | 1 cut(s) | 1215 |
| BsnI | GGCC | 3 cut(s) | 549, 639, 1046 |
| BsoBI | CYCGRG | 1 cut(s) | 787 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1077, 1355 |
| Bsp19I | CCATGG | 1 cut(s) | 287 |
| BspACI | CCGC | 3 cut(s) | 229, 937, 1047 |
| BspANI | GGCC | 3 cut(s) | 549, 639, 1046 |
| BspCNI | CTCAG | 5 cut(s) | 236, 501, 516, 543, 592 |
| BspDI | ATCGAT | 1 cut(s) | 339 |
| BspLI | GGNNCC | 3 cut(s) | 321, 468, 816 |
| BspOI | GCTAGC | 1 cut(s) | 1236 |
| BspPI | GGATC | 6 cut(s) | 74, 335, 346, 461, 474, 560 |
| BspQI | GCTCTTC | 1 cut(s) | 1324 |
| BsrBI | CCGCTC | 1 cut(s) | 229 |
| BsrDI | GCAATG | 1 cut(s) | 1384 |
| BsrI | ACTGG | 2 cut(s) | 901, 951 |
| BssECI | CCNNGG | 3 cut(s) | 287, 344, 1158 |
| BssT1I | CCWWGG | 2 cut(s) | 287, 1158 |
| Bst2UI | CCWGG | 3 cut(s) | 44, 368, 668 |
| Bst4CI | ACNGT | 4 cut(s) | 73, 755, 884, 1359 |
| Bst6I | CTCTTC | 2 cut(s) | 849, 1324 |
| BstC8I | GCNNGC | 4 cut(s) | 906, 1044, 1234, 1269 |
| BstDEI | CTNAG | 5 cut(s) | 223, 503, 509, 551, 579 |
| BstDSI | CCRYGG | 1 cut(s) | 287 |
| BstF5I | GGATG | 3 cut(s) | 52, 259, 1378 |
| BstMAI | GTCTC | 2 cut(s) | 873, 887 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 274, 1323 |
| BstNI | CCWGG | 3 cut(s) | 44, 368, 668 |
| BstSCI | CCNGG | 6 cut(s) | 42, 343, 366, 666, 966, 1276 |
| BstSFI | CTRYAG | 1 cut(s) | 324 |
| BstSLI | GKGCMC | 1 cut(s) | 1077 |
| BstV1I | GCAGC | 1 cut(s) | 747 |
| BstV2I | GAAGAC | 1 cut(s) | 722 |
| BstX2I | RGATCY | 1 cut(s) | 466 |
| BstYI | RGATCY | 1 cut(s) | 466 |
| Bsu15I | ATCGAT | 1 cut(s) | 339 |
| Bsu36I | CCTNAGG | 1 cut(s) | 503 |
| BsuRI | GGCC | 3 cut(s) | 549, 639, 1046 |
| BsuTUI | ATCGAT | 1 cut(s) | 339 |
| BtgI | CCRYGG | 1 cut(s) | 287 |
| BtrI | CACGTC | 1 cut(s) | 1205 |
| BtsCI | GGATG | 3 cut(s) | 52, 259, 1378 |
| Cac8I | GCNNGC | 4 cut(s) | 906, 1044, 1234, 1269 |
| Cfr13I | GGNCC | 1 cut(s) | 124 |
| ClaI | ATCGAT | 1 cut(s) | 339 |
| CseI | GACGC | 1 cut(s) | 584 |
| Csp6I | GTAC | 1 cut(s) | 751 |
| CviAII | CATG | 4 cut(s) | 288, 641, 650, 1386 |
| CviQI | GTAC | 1 cut(s) | 751 |
| DdeI | CTNAG | 5 cut(s) | 223, 503, 509, 551, 579 |
| EaeI | YGGCCR | 2 cut(s) | 637, 1044 |
| Eam1104I | CTCTTC | 2 cut(s) | 849, 1324 |
| EarI | CTCTTC | 2 cut(s) | 849, 1324 |
| Eco130I | CCWWGG | 2 cut(s) | 287, 1158 |
| Eco147I | AGGCCT | 1 cut(s) | 549 |
| Eco47I | GGWCC | 1 cut(s) | 124 |
| Eco81I | CCTNAGG | 1 cut(s) | 503 |
| Eco88I | CYCGRG | 1 cut(s) | 787 |
| EcoO109I | RGGNCCY | 1 cut(s) | 124 |
| EcoRII | CCWGG | 3 cut(s) | 42, 366, 666 |
| EcoT14I | CCWWGG | 2 cut(s) | 287, 1158 |
| ErhI | CCWWGG | 2 cut(s) | 287, 1158 |
| Esp3I | CGTCTC | 1 cut(s) | 873 |
| FaeI | CATG | 4 cut(s) | 291, 644, 653, 1389 |
| FaqI | GGGAC | 1 cut(s) | 1215 |
| FatI | CATG | 4 cut(s) | 287, 640, 649, 1385 |
| FauNDI | CATATG | 1 cut(s) | 775 |
| Fnu4HI | GCNGC | 3 cut(s) | 761, 938, 1047 |
| FokI | GGATG | 3 cut(s) | 59, 266, 1385 |
| Fsp4HI | GCNGC | 3 cut(s) | 761, 938, 1047 |
| FspBI | CTAG | 6 cut(s) | 35, 59, 113, 269, 1113, 1233 |
| GluI | GCNGC | 3 cut(s) | 761, 938, 1047 |
| HaeIII | GGCC | 3 cut(s) | 549, 639, 1046 |
| HapII | CCGG | 3 cut(s) | 344, 968, 1277 |
| HgaI | GACGC | 1 cut(s) | 584 |
| Hin1II | CATG | 4 cut(s) | 291, 644, 653, 1389 |
| HincII | GTYRAC | 4 cut(s) | 186, 522, 783, 861 |
| HindII | GTYRAC | 4 cut(s) | 186, 522, 783, 861 |
| HinfI | GANTC | 9 cut(s) | 105, 152, 283, 513, 862, 1052, 1146, 1184, 1253 |
| HpaI | GTTAAC | 2 cut(s) | 522, 783 |
| HpaII | CCGG | 3 cut(s) | 344, 968, 1277 |
| HphI | GGTGA | 4 cut(s) | 356, 896, 1179, 1193 |
| Hpy166II | GTNNAC | 5 cut(s) | 186, 522, 736, 783, 861 |
| Hpy188I | TCNGA | 3 cut(s) | 226, 482, 1350 |
| Hpy188III | TCNNGA | 2 cut(s) | 59, 818 |
| Hpy8I | GTNNAC | 5 cut(s) | 186, 522, 736, 783, 861 |
| Hpy99I | CGWCG | 1 cut(s) | 33 |
| HpyAV | CCTTC | 8 cut(s) | 115, 420, 894, 1165, 1192, 1204, 1240, 1363 |
| HpyCH4III | ACNGT | 4 cut(s) | 73, 755, 884, 1359 |
| HpyCH4IV | ACGT | 2 cut(s) | 719, 1204 |
| HpyCH4V | TGCA | 7 cut(s) | 98, 277, 530, 559, 763, 924, 1382 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 274, 1323 |
| HpyF3I | CTNAG | 5 cut(s) | 223, 503, 509, 551, 579 |
| HpySE526I | ACGT | 2 cut(s) | 719, 1204 |
| Hsp92II | CATG | 4 cut(s) | 291, 644, 653, 1389 |
| KspAI | GTTAAC | 2 cut(s) | 522, 783 |
| LguI | GCTCTTC | 1 cut(s) | 1324 |
| LmnI | GCTCC | 2 cut(s) | 820, 847 |
| Lsp1109I | GCAGC | 1 cut(s) | 747 |
| MaeI | CTAG | 6 cut(s) | 35, 59, 113, 269, 1113, 1233 |
| MaeII | ACGT | 2 cut(s) | 719, 1204 |
| MaeIII | GTNAC | 3 cut(s) | 688, 1081, 1185 |
| MbiI | CCGCTC | 1 cut(s) | 229 |
| MboII | GAAGA | 6 cut(s) | 148, 727, 866, 1207, 1311, 1378 |
| MfeI | CAATTG | 1 cut(s) | 866 |
| MflI | RGATCY | 1 cut(s) | 466 |
| MhlI | GDGCHC | 2 cut(s) | 1077, 1355 |
| MlsI | TGGCCA | 1 cut(s) | 639 |
| MluCI | AATT | 8 cut(s) | 301, 432, 560, 661, 675, 821, 866, 925 |
| MluNI | TGGCCA | 1 cut(s) | 639 |
| MlyI | GAGTC | 4 cut(s) | 161, 292, 856, 1193 |
| MmeI | TCCRAC | 1 cut(s) | 107 |
| Mox20I | TGGCCA | 1 cut(s) | 639 |
| MscI | TGGCCA | 1 cut(s) | 639 |
| MseI | TTAA | 8 cut(s) | 75, 144, 246, 521, 660, 782, 977, 1310 |
| Msp20I | TGGCCA | 1 cut(s) | 639 |
| MspA1I | CMGCKG | 2 cut(s) | 760, 1049 |
| MspI | CCGG | 3 cut(s) | 344, 968, 1277 |
| MspR9I | CCNGG | 6 cut(s) | 44, 345, 368, 668, 968, 1278 |
| MunI | CAATTG | 1 cut(s) | 866 |
| MvaI | CCWGG | 3 cut(s) | 44, 368, 668 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 274, 1323 |
| NciI | CCSGG | 3 cut(s) | 345, 968, 1278 |
| NcoI | CCATGG | 1 cut(s) | 287 |
| NdeI | CATATG | 1 cut(s) | 775 |
| NheI | GCTAGC | 1 cut(s) | 1232 |
| NlaIII | CATG | 4 cut(s) | 291, 644, 653, 1389 |
| NlaIV | GGNNCC | 3 cut(s) | 321, 468, 816 |
| NmuCI | GTSAC | 1 cut(s) | 1185 |
| PceI | AGGCCT | 1 cut(s) | 549 |
| PciSI | GCTCTTC | 1 cut(s) | 1324 |
| PfeI | GAWTC | 5 cut(s) | 105, 513, 1052, 1146, 1253 |
| PflFI | GACNNNGTC | 1 cut(s) | 721 |
| PfoI | TCCNGGA | 1 cut(s) | 42 |
| PkrI | GCNGC | 3 cut(s) | 762, 939, 1048 |
| PleI | GAGTC | 4 cut(s) | 160, 291, 856, 1192 |
| PpsI | GAGTC | 4 cut(s) | 160, 291, 856, 1192 |
| PpuMI | RGGWCCY | 1 cut(s) | 124 |
| PshBI | ATTAAT | 2 cut(s) | 660, 977 |
| Psp5II | RGGWCCY | 1 cut(s) | 124 |
| Psp6I | CCWGG | 3 cut(s) | 42, 366, 666 |
| PspGI | CCWGG | 3 cut(s) | 42, 366, 666 |
| PspN4I | GGNNCC | 3 cut(s) | 321, 468, 816 |
| PspPI | GGNCC | 1 cut(s) | 124 |
| PspPPI | RGGWCCY | 1 cut(s) | 124 |
| PsuI | RGATCY | 1 cut(s) | 466 |
| PsyI | GACNNNGTC | 1 cut(s) | 721 |
| PvuII | CAGCTG | 1 cut(s) | 760 |
| RsaI | GTAC | 1 cut(s) | 752 |
| RsaNI | GTAC | 1 cut(s) | 751 |
| SapI | GCTCTTC | 1 cut(s) | 1324 |
| SaqAI | TTAA | 8 cut(s) | 75, 144, 246, 521, 660, 782, 977, 1310 |
| SatI | GCNGC | 3 cut(s) | 761, 938, 1047 |
| Sau96I | GGNCC | 1 cut(s) | 124 |
| SchI | GAGTC | 4 cut(s) | 161, 292, 856, 1193 |
| ScrFI | CCNGG | 6 cut(s) | 44, 345, 368, 668, 968, 1278 |
| SduI | GDGCHC | 2 cut(s) | 1077, 1355 |
| SfcI | CTRYAG | 1 cut(s) | 324 |
| SinI | GGWCC | 1 cut(s) | 124 |
| Sse9I | AATT | 8 cut(s) | 301, 432, 560, 661, 675, 821, 866, 925 |
| SseBI | AGGCCT | 1 cut(s) | 549 |
| SsiI | CCGC | 3 cut(s) | 229, 937, 1047 |
| SspI | AATATT | 1 cut(s) | 975 |
| SspMI | CTAG | 6 cut(s) | 35, 59, 113, 269, 1113, 1233 |
| StuI | AGGCCT | 1 cut(s) | 549 |
| StyD4I | CCNGG | 6 cut(s) | 42, 343, 366, 666, 966, 1276 |
| StyI | CCWWGG | 2 cut(s) | 287, 1158 |
| TaaI | ACNGT | 4 cut(s) | 73, 755, 884, 1359 |
| TaiI | ACGT | 2 cut(s) | 722, 1207 |
| TaqI | TCGA | 5 cut(s) | 339, 516, 600, 725, 915 |
| TasI | AATT | 8 cut(s) | 301, 432, 560, 661, 675, 821, 866, 925 |
| TauI | GCSGC | 2 cut(s) | 940, 1049 |
| TfiI | GAWTC | 5 cut(s) | 105, 513, 1052, 1146, 1253 |
| Tru1I | TTAA | 8 cut(s) | 75, 144, 246, 521, 660, 782, 977, 1310 |
| Tru9I | TTAA | 8 cut(s) | 75, 144, 246, 521, 660, 782, 977, 1310 |
| TseFI | GTSAC | 1 cut(s) | 1185 |
| TseI | GCWGC | 1 cut(s) | 760 |
| Tsp45I | GTSAC | 1 cut(s) | 1185 |
| TspDTI | ATGAA | 2 cut(s) | 621, 1143 |
| TspGWI | ACGGA | 4 cut(s) | 266, 479, 707, 1303 |
| Tth111I | GACNNNGTC | 1 cut(s) | 721 |
| VpaK11BI | GGWCC | 1 cut(s) | 124 |
| VspI | ATTAAT | 2 cut(s) | 660, 977 |
| XbaI | TCTAGA | 1 cut(s) | 58 |
| XspI | CTAG | 6 cut(s) | 35, 59, 113, 269, 1113, 1233 |