ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 20 |
| AccII | CGCG | 1 cut(s) | 593 |
| AciI | CCGC | 3 cut(s) | 18, 94, 593 |
| AclI | AACGTT | 1 cut(s) | 51 |
| AclWI | GGATC | 2 cut(s) | 623, 636 |
| AcsI | RAATTY | 1 cut(s) | 215 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 392 |
| AgsI | TTSAA | 1 cut(s) | 534 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 20, 52 |
| AluBI | AGCT | 2 cut(s) | 101, 561 |
| AluI | AGCT | 2 cut(s) | 101, 561 |
| AlwI | GGATC | 2 cut(s) | 623, 636 |
| Ama87I | CYCGRG | 2 cut(s) | 145, 406 |
| ApeKI | GCWGC | 1 cut(s) | 558 |
| ApoI | RAATTY | 1 cut(s) | 215 |
| AspS9I | GGNCC | 1 cut(s) | 142 |
| AsuC2I | CCSGG | 2 cut(s) | 407, 408 |
| AsuHPI | GGTGA | 1 cut(s) | 460 |
| AsuNHI | GCTAGC | 1 cut(s) | 97 |
| AvaI | CYCGRG | 2 cut(s) | 145, 406 |
| AvaII | GGWCC | 1 cut(s) | 142 |
| BamHI | GGATCC | 1 cut(s) | 628 |
| BanII | GRGCYC | 1 cut(s) | 350 |
| BauI | CACGAG | 1 cut(s) | 330 |
| BbvI | GCAGC | 1 cut(s) | 570 |
| BccI | CCATC | 3 cut(s) | 386, 391, 542 |
| BcnI | CCSGG | 2 cut(s) | 407, 408 |
| BfaI | CTAG | 2 cut(s) | 98, 176 |
| BfmI | CTRYAG | 2 cut(s) | 23, 338 |
| BisI | GCNGC | 2 cut(s) | 95, 559 |
| BlsI | GCNGC | 2 cut(s) | 96, 560 |
| Bme1390I | CCNGG | 2 cut(s) | 407, 408 |
| Bme18I | GGWCC | 1 cut(s) | 142 |
| BmeT110I | CYCGRG | 2 cut(s) | 145, 406 |
| BmgT120I | GGNCC | 1 cut(s) | 142 |
| BmiI | GGNNCC | 5 cut(s) | 144, 347, 384, 597, 630 |
| BmrFI | CCNGG | 2 cut(s) | 407, 408 |
| BmrI | ACTGGG | 1 cut(s) | 204 |
| BmtI | GCTAGC | 1 cut(s) | 101 |
| BmuI | ACTGGG | 1 cut(s) | 204 |
| BpuMI | CCSGG | 2 cut(s) | 407, 408 |
| Bsa29I | ATCGAT | 1 cut(s) | 325 |
| BsaJI | CCNNGG | 4 cut(s) | 350, 406, 407, 632 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 392 |
| Bse1I | ACTGG | 2 cut(s) | 126, 199 |
| BseCI | ATCGAT | 1 cut(s) | 325 |
| BseDI | CCNNGG | 4 cut(s) | 350, 406, 407, 632 |
| BseGI | GGATG | 3 cut(s) | 115, 402, 618 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 392 |
| BseNI | ACTGG | 2 cut(s) | 126, 199 |
| BseRI | GAGGAG | 1 cut(s) | 272 |
| BseXI | GCAGC | 1 cut(s) | 570 |
| Bsh1236I | CGCG | 1 cut(s) | 593 |
| BshVI | ATCGAT | 1 cut(s) | 325 |
| BsiHKCI | CYCGRG | 2 cut(s) | 145, 406 |
| BsiSI | CCGG | 2 cut(s) | 223, 407 |
| BslFI | GGGAC | 2 cut(s) | 425, 650 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 392 |
| BsmFI | GGGAC | 2 cut(s) | 425, 650 |
| BsoBI | CYCGRG | 2 cut(s) | 145, 406 |
| Bsp1286I | GDGCHC | 1 cut(s) | 350 |
| Bsp143I | GATC | 5 cut(s) | 149, 204, 322, 326, 628 |
| BspACI | CCGC | 3 cut(s) | 18, 94, 593 |
| BspDI | ATCGAT | 1 cut(s) | 325 |
| BspFNI | CGCG | 1 cut(s) | 593 |
| BspLI | GGNNCC | 5 cut(s) | 144, 347, 384, 597, 630 |
| BspMAI | CTGCAG | 2 cut(s) | 27, 342 |
| BspOI | GCTAGC | 1 cut(s) | 101 |
| BspPI | GGATC | 2 cut(s) | 623, 636 |
| BsrBI | CCGCTC | 1 cut(s) | 20 |
| BsrI | ACTGG | 2 cut(s) | 126, 199 |
| BssECI | CCNNGG | 4 cut(s) | 350, 406, 407, 632 |
| BssMI | GATC | 5 cut(s) | 149, 204, 322, 326, 628 |
| BssSI | CACGAG | 1 cut(s) | 330 |
| BssT1I | CCWWGG | 2 cut(s) | 350, 632 |
| Bst2BI | CACGAG | 1 cut(s) | 330 |
| Bst4CI | ACNGT | 3 cut(s) | 136, 538, 645 |
| BstC8I | GCNNGC | 1 cut(s) | 99 |
| BstDEI | CTNAG | 3 cut(s) | 566, 602, 656 |
| BstF5I | GGATG | 3 cut(s) | 115, 402, 618 |
| BstFNI | CGCG | 1 cut(s) | 593 |
| BstKTI | GATC | 5 cut(s) | 152, 207, 325, 329, 631 |
| BstMBI | GATC | 5 cut(s) | 149, 204, 322, 326, 628 |
| BstSCI | CCNGG | 2 cut(s) | 405, 406 |
| BstSFI | CTRYAG | 2 cut(s) | 23, 338 |
| BstUI | CGCG | 1 cut(s) | 593 |
| BstV1I | GCAGC | 1 cut(s) | 570 |
| BstX2I | RGATCY | 1 cut(s) | 628 |
| BstYI | RGATCY | 1 cut(s) | 628 |
| Bsu15I | ATCGAT | 1 cut(s) | 325 |
| BsuTUI | ATCGAT | 1 cut(s) | 325 |
| BtsCI | GGATG | 3 cut(s) | 115, 402, 618 |
| BtsIMutI | CAGTG | 1 cut(s) | 192 |
| Cac8I | GCNNGC | 1 cut(s) | 99 |
| Cfr13I | GGNCC | 1 cut(s) | 142 |
| Cfr9I | CCCGGG | 1 cut(s) | 406 |
| ClaI | ATCGAT | 1 cut(s) | 325 |
| CviJI | RGCY | 7 cut(s) | 97, 101, 175, 348, 383, 561, 598 |
| CviKI_1 | RGCY | 7 cut(s) | 97, 101, 175, 348, 383, 561, 598 |
| DdeI | CTNAG | 3 cut(s) | 566, 602, 656 |
| DpnI | GATC | 5 cut(s) | 151, 206, 324, 328, 630 |
| DpnII | GATC | 5 cut(s) | 149, 204, 322, 326, 628 |
| DraI | TTTAAA | 1 cut(s) | 310 |
| Eco130I | CCWWGG | 2 cut(s) | 350, 632 |
| Eco24I | GRGCYC | 1 cut(s) | 350 |
| Eco47I | GGWCC | 1 cut(s) | 142 |
| Eco88I | CYCGRG | 2 cut(s) | 145, 406 |
| EcoO109I | RGGNCCY | 1 cut(s) | 142 |
| EcoT14I | CCWWGG | 2 cut(s) | 350, 632 |
| EcoT38I | GRGCYC | 1 cut(s) | 350 |
| ErhI | CCWWGG | 2 cut(s) | 350, 632 |
| FaiI | YATR | 4 cut(s) | 65, 230, 244, 521 |
| FaqI | GGGAC | 2 cut(s) | 425, 650 |
| Fnu4HI | GCNGC | 2 cut(s) | 95, 559 |
| FokI | GGATG | 3 cut(s) | 122, 409, 625 |
| FriOI | GRGCYC | 1 cut(s) | 350 |
| Fsp4HI | GCNGC | 2 cut(s) | 95, 559 |
| FspBI | CTAG | 2 cut(s) | 98, 176 |
| GluI | GCNGC | 2 cut(s) | 95, 559 |
| HapII | CCGG | 2 cut(s) | 223, 407 |
| HincII | GTYRAC | 2 cut(s) | 249, 403 |
| HindII | GTYRAC | 2 cut(s) | 249, 403 |
| HinfI | GANTC | 4 cut(s) | 168, 333, 530, 588 |
| HpaII | CCGG | 2 cut(s) | 223, 407 |
| HphI | GGTGA | 1 cut(s) | 460 |
| Hpy166II | GTNNAC | 3 cut(s) | 249, 264, 403 |
| Hpy188I | TCNGA | 2 cut(s) | 316, 391 |
| Hpy188III | TCNNGA | 5 cut(s) | 46, 107, 235, 330, 431 |
| Hpy8I | GTNNAC | 3 cut(s) | 249, 264, 403 |
| HpyAV | CCTTC | 3 cut(s) | 247, 311, 483 |
| HpyCH4III | ACNGT | 3 cut(s) | 136, 538, 645 |
| HpyCH4IV | ACGT | 4 cut(s) | 51, 72, 210, 414 |
| HpyCH4V | TGCA | 4 cut(s) | 25, 340, 467, 622 |
| HpyF3I | CTNAG | 3 cut(s) | 566, 602, 656 |
| HpySE526I | ACGT | 4 cut(s) | 51, 72, 210, 414 |
| Kzo9I | GATC | 5 cut(s) | 149, 204, 322, 326, 628 |
| LmnI | GCTCC | 3 cut(s) | 345, 388, 595 |
| Lsp1109I | GCAGC | 1 cut(s) | 570 |
| MaeI | CTAG | 2 cut(s) | 98, 176 |
| MaeII | ACGT | 4 cut(s) | 51, 72, 210, 414 |
| MalI | GATC | 5 cut(s) | 151, 206, 324, 328, 630 |
| MbiI | CCGCTC | 1 cut(s) | 20 |
| MboI | GATC | 5 cut(s) | 149, 204, 322, 326, 628 |
| MboII | GAAGA | 1 cut(s) | 505 |
| MflI | RGATCY | 1 cut(s) | 628 |
| MhlI | GDGCHC | 1 cut(s) | 350 |
| MluCI | AATT | 2 cut(s) | 215, 364 |
| MlyI | GAGTC | 1 cut(s) | 342 |
| MmeI | TCCRAC | 2 cut(s) | 58, 606 |
| MnlI | CCTC | 5 cut(s) | 61, 84, 133, 250, 609 |
| MseI | TTAA | 3 cut(s) | 131, 309, 422 |
| MspI | CCGG | 2 cut(s) | 223, 407 |
| MspR9I | CCNGG | 2 cut(s) | 407, 408 |
| MvnI | CGCG | 1 cut(s) | 593 |
| NciI | CCSGG | 2 cut(s) | 407, 408 |
| NdeII | GATC | 5 cut(s) | 149, 204, 322, 326, 628 |
| NheI | GCTAGC | 1 cut(s) | 97 |
| NlaIV | GGNNCC | 5 cut(s) | 144, 347, 384, 597, 630 |
| PfeI | GAWTC | 3 cut(s) | 168, 530, 588 |
| PkrI | GCNGC | 2 cut(s) | 96, 560 |
| PleI | GAGTC | 1 cut(s) | 341 |
| PpsI | GAGTC | 1 cut(s) | 341 |
| PpuMI | RGGWCCY | 1 cut(s) | 142 |
| Psp1406I | AACGTT | 1 cut(s) | 51 |
| Psp5II | RGGWCCY | 1 cut(s) | 142 |
| PspN4I | GGNNCC | 5 cut(s) | 144, 347, 384, 597, 630 |
| PspPI | GGNCC | 1 cut(s) | 142 |
| PspPPI | RGGWCCY | 1 cut(s) | 142 |
| PstI | CTGCAG | 2 cut(s) | 27, 342 |
| PsuI | RGATCY | 1 cut(s) | 628 |
| SaqAI | TTAA | 3 cut(s) | 131, 309, 422 |
| SatI | GCNGC | 2 cut(s) | 95, 559 |
| Sau3AI | GATC | 5 cut(s) | 149, 204, 322, 326, 628 |
| Sau96I | GGNCC | 1 cut(s) | 142 |
| SbfI | CCTGCAGG | 1 cut(s) | 342 |
| SchI | GAGTC | 1 cut(s) | 342 |
| ScrFI | CCNGG | 2 cut(s) | 407, 408 |
| SdaI | CCTGCAGG | 1 cut(s) | 342 |
| SduI | GDGCHC | 1 cut(s) | 350 |
| SetI | ASST | 7 cut(s) | 54, 75, 103, 213, 417, 563, 572 |
| SfcI | CTRYAG | 2 cut(s) | 23, 338 |
| SinI | GGWCC | 1 cut(s) | 142 |
| SmaI | CCCGGG | 1 cut(s) | 408 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 342 |
| Sse9I | AATT | 2 cut(s) | 215, 364 |
| SsiI | CCGC | 3 cut(s) | 18, 94, 593 |
| SspMI | CTAG | 2 cut(s) | 98, 176 |
| StyD4I | CCNGG | 2 cut(s) | 405, 406 |
| StyI | CCWWGG | 2 cut(s) | 350, 632 |
| TaaI | ACNGT | 3 cut(s) | 136, 538, 645 |
| TaiI | ACGT | 4 cut(s) | 54, 75, 213, 417 |
| TaqI | TCGA | 4 cut(s) | 45, 89, 325, 368 |
| TasI | AATT | 2 cut(s) | 215, 364 |
| TauI | GCSGC | 1 cut(s) | 97 |
| TfiI | GAWTC | 3 cut(s) | 168, 530, 588 |
| Tru1I | TTAA | 3 cut(s) | 131, 309, 422 |
| Tru9I | TTAA | 3 cut(s) | 131, 309, 422 |
| TscAI | CASTG | 1 cut(s) | 199 |
| TseI | GCWGC | 1 cut(s) | 558 |
| TspDTI | ATGAA | 2 cut(s) | 132, 508 |
| TspGWI | ACGGA | 4 cut(s) | 176, 302, 375, 542 |
| TspMI | CCCGGG | 1 cut(s) | 406 |
| TspRI | CASTG | 1 cut(s) | 199 |
| VpaK11BI | GGWCC | 1 cut(s) | 142 |
| XapI | RAATTY | 1 cut(s) | 215 |
| XmaI | CCCGGG | 1 cut(s) | 406 |
| XspI | CTAG | 2 cut(s) | 98, 176 |