Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 30 - 100 | 4.1e-07 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 970 |
| Acc36I | ACCTGC | 2 cut(s) | 385, 970 |
| AccB1I | GGYRCC | 1 cut(s) | 982 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 52 |
| AccI | GTMKAC | 1 cut(s) | 208 |
| AciI | CCGC | 2 cut(s) | 481, 936 |
| AclWI | GGATC | 7 cut(s) | 37, 63, 210, 311, 362, 713, 754 |
| AcoI | YGGCCR | 1 cut(s) | 840 |
| AcsI | RAATTY | 2 cut(s) | 563, 767 |
| AcvI | CACGTG | 1 cut(s) | 971 |
| AcyI | GRCGYC | 1 cut(s) | 853 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 52, 240, 443, 487, 849 |
| AflII | CTTAAG | 1 cut(s) | 133 |
| AgsI | TTSAA | 2 cut(s) | 128, 188 |
| AjiI | CACGTC | 1 cut(s) | 871 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 301, 333, 418, 450 |
| AluBI | AGCT | 1 cut(s) | 914 |
| AluI | AGCT | 1 cut(s) | 914 |
| Alw21I | GWGCWC | 1 cut(s) | 970 |
| Alw26I | GTCTC | 1 cut(s) | 915 |
| Alw44I | GTGCAC | 1 cut(s) | 966 |
| AlwI | GGATC | 7 cut(s) | 37, 63, 210, 311, 362, 713, 754 |
| AoxI | GGCC | 1 cut(s) | 840 |
| ApaLI | GTGCAC | 1 cut(s) | 966 |
| ApoI | RAATTY | 2 cut(s) | 563, 767 |
| AseI | ATTAAT | 1 cut(s) | 18 |
| AsuC2I | CCSGG | 1 cut(s) | 906 |
| AsuHPI | GGTGA | 3 cut(s) | 169, 467, 808 |
| AsuII | TTCGAA | 1 cut(s) | 754 |
| BaeGI | GKGCMC | 1 cut(s) | 970 |
| BanI | GGYRCC | 1 cut(s) | 982 |
| BanII | GRGCYC | 2 cut(s) | 163, 263 |
| BbrPI | CACGTG | 1 cut(s) | 971 |
| BbsI | GAAGAC | 1 cut(s) | 103 |
| Bbv12I | GWGCWC | 1 cut(s) | 970 |
| BccI | CCATC | 7 cut(s) | 299, 516, 678, 776, 796, 806, 820 |
| BclI | TGATCA | 1 cut(s) | 274 |
| BcnI | CCSGG | 1 cut(s) | 906 |
| BcoDI | GTCTC | 1 cut(s) | 915 |
| BfaI | CTAG | 3 cut(s) | 551, 764, 960 |
| BfrI | CTTAAG | 1 cut(s) | 133 |
| BfuAI | ACCTGC | 2 cut(s) | 385, 970 |
| BglII | AGATCT | 1 cut(s) | 31 |
| Bme1390I | CCNGG | 1 cut(s) | 906 |
| BmgBI | CACGTC | 1 cut(s) | 871 |
| BmiI | GGNNCC | 4 cut(s) | 260, 427, 834, 984 |
| BmrFI | CCNGG | 1 cut(s) | 906 |
| BmrI | ACTGGG | 1 cut(s) | 431 |
| BmsI | GCATC | 4 cut(s) | 13, 220, 492, 563 |
| BmuI | ACTGGG | 1 cut(s) | 431 |
| BpiI | GAAGAC | 1 cut(s) | 103 |
| BpmI | CTGGAG | 1 cut(s) | 939 |
| Bpu10I | CCTNAGC | 1 cut(s) | 538 |
| Bpu14I | TTCGAA | 1 cut(s) | 754 |
| BpuMI | CCSGG | 1 cut(s) | 906 |
| BsaAI | YACGTR | 1 cut(s) | 971 |
| BsaBI | GATNNNNATC | 2 cut(s) | 47, 201 |
| BsaHI | GRCGYC | 1 cut(s) | 853 |
| BsaJI | CCNNGG | 2 cut(s) | 263, 699 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 52, 240, 443, 487, 849 |
| Bse118I | RCCGGY | 1 cut(s) | 838 |
| Bse1I | ACTGG | 2 cut(s) | 426, 922 |
| Bse8I | GATNNNNATC | 2 cut(s) | 47, 201 |
| BseDI | CCNNGG | 2 cut(s) | 263, 699 |
| BseGI | GGATG | 4 cut(s) | 67, 641, 709, 953 |
| BseJI | GATNNNNATC | 2 cut(s) | 47, 201 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 52, 240, 443, 487, 849 |
| BseMII | CTCAG | 3 cut(s) | 155, 356, 885 |
| BseNI | ACTGG | 2 cut(s) | 426, 922 |
| BseRI | GAGGAG | 2 cut(s) | 185, 788 |
| BseSI | GKGCMC | 1 cut(s) | 970 |
| BshFI | GGCC | 1 cut(s) | 842 |
| BshNI | GGYRCC | 1 cut(s) | 982 |
| BsiHKAI | GWGCWC | 1 cut(s) | 970 |
| BsiSI | CCGG | 2 cut(s) | 839, 906 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 52, 240, 443, 487, 849 |
| BsmAI | GTCTC | 1 cut(s) | 915 |
| BsnI | GGCC | 1 cut(s) | 842 |
| Bsp119I | TTCGAA | 1 cut(s) | 754 |
| Bsp1286I | GDGCHC | 3 cut(s) | 163, 263, 970 |
| Bsp143I | GATC | 9 cut(s) | 31, 42, 55, 202, 274, 316, 354, 718, 746 |
| Bsp19I | CCATGG | 1 cut(s) | 263 |
| BspACI | CCGC | 2 cut(s) | 481, 936 |
| BspANI | GGCC | 1 cut(s) | 842 |
| BspCNI | CTCAG | 3 cut(s) | 156, 355, 886 |
| BspHI | TCATGA | 1 cut(s) | 384 |
| BspLI | GGNNCC | 4 cut(s) | 260, 427, 834, 984 |
| BspMI | ACCTGC | 2 cut(s) | 385, 970 |
| BspPI | GGATC | 7 cut(s) | 37, 63, 210, 311, 362, 713, 754 |
| BspT104I | TTCGAA | 1 cut(s) | 754 |
| BspT107I | GGYRCC | 1 cut(s) | 982 |
| BspTI | CTTAAG | 1 cut(s) | 133 |
| BsrFI | RCCGGY | 1 cut(s) | 838 |
| BsrI | ACTGG | 2 cut(s) | 426, 922 |
| BssAI | RCCGGY | 1 cut(s) | 838 |
| BssECI | CCNNGG | 2 cut(s) | 263, 699 |
| BssMI | GATC | 9 cut(s) | 31, 42, 55, 202, 274, 316, 354, 718, 746 |
| BssNAI | GTATAC | 1 cut(s) | 209 |
| BssNI | GRCGYC | 1 cut(s) | 853 |
| BssT1I | CCWWGG | 1 cut(s) | 263 |
| Bst1107I | GTATAC | 1 cut(s) | 209 |
| Bst4CI | ACNGT | 3 cut(s) | 102, 181, 313 |
| BstACI | GRCGYC | 1 cut(s) | 853 |
| BstAFI | CTTAAG | 1 cut(s) | 133 |
| BstBAI | YACGTR | 1 cut(s) | 971 |
| BstBI | TTCGAA | 1 cut(s) | 754 |
| BstDEI | CTNAG | 6 cut(s) | 164, 335, 342, 392, 538, 894 |
| BstDSI | CCRYGG | 2 cut(s) | 263, 699 |
| BstEII | GGTNACC | 1 cut(s) | 175 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 238 |
| BstF5I | GGATG | 4 cut(s) | 67, 641, 709, 953 |
| BstKTI | GATC | 9 cut(s) | 34, 45, 58, 205, 277, 319, 357, 721, 749 |
| BstMAI | GTCTC | 1 cut(s) | 915 |
| BstMBI | GATC | 9 cut(s) | 31, 42, 55, 202, 274, 316, 354, 718, 746 |
| BstPI | GGTNACC | 1 cut(s) | 175 |
| BstSCI | CCNGG | 1 cut(s) | 904 |
| BstSLI | GKGCMC | 1 cut(s) | 970 |
| BstV2I | GAAGAC | 1 cut(s) | 103 |
| BstX2I | RGATCY | 2 cut(s) | 31, 55 |
| BstYI | RGATCY | 2 cut(s) | 31, 55 |
| BstZ17I | GTATAC | 1 cut(s) | 209 |
| BsuRI | GGCC | 1 cut(s) | 842 |
| BtgI | CCRYGG | 2 cut(s) | 263, 699 |
| BtrI | CACGTC | 1 cut(s) | 871 |
| BtsCI | GGATG | 4 cut(s) | 67, 641, 709, 953 |
| BtsI | GCAGTG | 1 cut(s) | 758 |
| BtsIMutI | CAGTG | 1 cut(s) | 758 |
| BveI | ACCTGC | 2 cut(s) | 385, 970 |
| CciI | TCATGA | 1 cut(s) | 384 |
| Cfr10I | RCCGGY | 1 cut(s) | 838 |
| CseI | GACGC | 1 cut(s) | 842 |
| CviAII | CATG | 4 cut(s) | 264, 278, 385, 623 |
| CviJI | RGCY | 8 cut(s) | 131, 154, 161, 261, 347, 842, 914, 944 |
| CviKI_1 | RGCY | 8 cut(s) | 131, 154, 161, 261, 347, 842, 914, 944 |
| DdeI | CTNAG | 6 cut(s) | 164, 335, 342, 392, 538, 894 |
| DpnI | GATC | 9 cut(s) | 33, 44, 57, 204, 276, 318, 356, 720, 748 |
| DpnII | GATC | 9 cut(s) | 31, 42, 55, 202, 274, 316, 354, 718, 746 |
| EaeI | YGGCCR | 1 cut(s) | 840 |
| Eco130I | CCWWGG | 1 cut(s) | 263 |
| Eco24I | GRGCYC | 2 cut(s) | 163, 263 |
| Eco72I | CACGTG | 1 cut(s) | 971 |
| Eco91I | GGTNACC | 1 cut(s) | 175 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 238 |
| EcoO65I | GGTNACC | 1 cut(s) | 175 |
| EcoRI | GAATTC | 1 cut(s) | 767 |
| EcoT14I | CCWWGG | 1 cut(s) | 263 |
| EcoT38I | GRGCYC | 2 cut(s) | 163, 263 |
| ErhI | CCWWGG | 1 cut(s) | 263 |
| FaeI | CATG | 4 cut(s) | 267, 281, 388, 626 |
| FatI | CATG | 4 cut(s) | 263, 277, 384, 622 |
| FauI | CCCGC | 1 cut(s) | 929 |
| FbaI | TGATCA | 1 cut(s) | 274 |
| FblI | GTMKAC | 1 cut(s) | 208 |
| FokI | GGATG | 4 cut(s) | 74, 648, 716, 960 |
| FriOI | GRGCYC | 2 cut(s) | 163, 263 |
| FspBI | CTAG | 3 cut(s) | 551, 764, 960 |
| GsuI | CTGGAG | 1 cut(s) | 939 |
| HaeIII | GGCC | 1 cut(s) | 842 |
| HapII | CCGG | 2 cut(s) | 839, 906 |
| HgaI | GACGC | 1 cut(s) | 842 |
| Hin1I | GRCGYC | 1 cut(s) | 853 |
| Hin1II | CATG | 4 cut(s) | 267, 281, 388, 626 |
| HincII | GTYRAC | 1 cut(s) | 105 |
| HindII | GTYRAC | 1 cut(s) | 105 |
| HinfI | GANTC | 4 cut(s) | 197, 388, 657, 890 |
| HpaI | GTTAAC | 1 cut(s) | 105 |
| HpaII | CCGG | 2 cut(s) | 839, 906 |
| HphI | GGTGA | 3 cut(s) | 169, 467, 808 |
| Hpy166II | GTNNAC | 4 cut(s) | 105, 209, 709, 968 |
| Hpy188I | TCNGA | 7 cut(s) | 36, 165, 202, 229, 559, 858, 895 |
| Hpy188III | TCNNGA | 3 cut(s) | 59, 385, 883 |
| Hpy8I | GTNNAC | 4 cut(s) | 105, 209, 709, 968 |
| Hpy99I | CGWCG | 2 cut(s) | 852, 858 |
| HpyAV | CCTTC | 2 cut(s) | 391, 934 |
| HpyCH4III | ACNGT | 3 cut(s) | 102, 181, 313 |
| HpyCH4IV | ACGT | 3 cut(s) | 847, 870, 970 |
| HpyCH4V | TGCA | 5 cut(s) | 26, 299, 517, 646, 968 |
| HpyF3I | CTNAG | 6 cut(s) | 164, 335, 342, 392, 538, 894 |
| HpySE526I | ACGT | 3 cut(s) | 847, 870, 970 |
| Hsp92I | GRCGYC | 1 cut(s) | 853 |
| Hsp92II | CATG | 4 cut(s) | 267, 281, 388, 626 |
| Ksp22I | TGATCA | 1 cut(s) | 274 |
| KspAI | GTTAAC | 1 cut(s) | 105 |
| Kzo9I | GATC | 9 cut(s) | 31, 42, 55, 202, 274, 316, 354, 718, 746 |
| LmnI | GCTCC | 1 cut(s) | 258 |
| LweI | GCATC | 4 cut(s) | 13, 220, 492, 563 |
| MaeI | CTAG | 3 cut(s) | 551, 764, 960 |
| MaeII | ACGT | 3 cut(s) | 847, 870, 970 |
| MaeIII | GTNAC | 1 cut(s) | 175 |
| MalI | GATC | 9 cut(s) | 33, 44, 57, 204, 276, 318, 356, 720, 748 |
| MboI | GATC | 9 cut(s) | 31, 42, 55, 202, 274, 316, 354, 718, 746 |
| MboII | GAAGA | 5 cut(s) | 41, 108, 206, 693, 811 |
| MflI | RGATCY | 2 cut(s) | 31, 55 |
| MhlI | GDGCHC | 3 cut(s) | 163, 263, 970 |
| MluCI | AATT | 4 cut(s) | 79, 563, 767, 861 |
| MlyI | GAGTC | 2 cut(s) | 666, 899 |
| MmeI | TCCRAC | 3 cut(s) | 73, 526, 836 |
| MseI | TTAA | 7 cut(s) | 18, 104, 134, 251, 372, 528, 927 |
| MslI | CAYNNNNRTG | 1 cut(s) | 488 |
| MspCI | CTTAAG | 1 cut(s) | 133 |
| MspI | CCGG | 2 cut(s) | 839, 906 |
| MspR9I | CCNGG | 1 cut(s) | 906 |
| NciI | CCSGG | 1 cut(s) | 906 |
| NcoI | CCATGG | 1 cut(s) | 263 |
| NdeII | GATC | 9 cut(s) | 31, 42, 55, 202, 274, 316, 354, 718, 746 |
| NlaIII | CATG | 4 cut(s) | 267, 281, 388, 626 |
| NlaIV | GGNNCC | 4 cut(s) | 260, 427, 834, 984 |
| NmeAIII | GCCGAG | 1 cut(s) | 754 |
| NmuCI | GTSAC | 1 cut(s) | 175 |
| NspV | TTCGAA | 1 cut(s) | 754 |
| PagI | TCATGA | 1 cut(s) | 384 |
| PaqCI | CACCTGC | 1 cut(s) | 970 |
| PfeI | GAWTC | 2 cut(s) | 197, 388 |
| PflFI | GACNNNGTC | 1 cut(s) | 889 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 52 |
| PleI | GAGTC | 2 cut(s) | 665, 898 |
| PmaCI | CACGTG | 1 cut(s) | 971 |
| PmlI | CACGTG | 1 cut(s) | 971 |
| PpsI | GAGTC | 2 cut(s) | 665, 898 |
| Ppu21I | YACGTR | 1 cut(s) | 971 |
| PshBI | ATTAAT | 1 cut(s) | 18 |
| PspCI | CACGTG | 1 cut(s) | 971 |
| PspEI | GGTNACC | 1 cut(s) | 175 |
| PspN4I | GGNNCC | 4 cut(s) | 260, 427, 834, 984 |
| PsuI | RGATCY | 2 cut(s) | 31, 55 |
| PsyI | GACNNNGTC | 1 cut(s) | 889 |
| RseI | CAYNNNNRTG | 1 cut(s) | 488 |
| SaqAI | TTAA | 7 cut(s) | 18, 104, 134, 251, 372, 528, 927 |
| Sau3AI | GATC | 9 cut(s) | 31, 42, 55, 202, 274, 316, 354, 718, 746 |
| SchI | GAGTC | 2 cut(s) | 666, 899 |
| ScrFI | CCNGG | 1 cut(s) | 906 |
| SduI | GDGCHC | 3 cut(s) | 163, 263, 970 |
| SfaNI | GCATC | 4 cut(s) | 13, 220, 492, 563 |
| SfuI | TTCGAA | 1 cut(s) | 754 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 488 |
| SmlI | CTYRAG | 1 cut(s) | 133 |
| SmoI | CTYRAG | 1 cut(s) | 133 |
| Sse9I | AATT | 4 cut(s) | 79, 563, 767, 861 |
| SsiI | CCGC | 2 cut(s) | 481, 936 |
| SspI | AATATT | 1 cut(s) | 532 |
| SspMI | CTAG | 3 cut(s) | 551, 764, 960 |
| StyD4I | CCNGG | 1 cut(s) | 904 |
| StyI | CCWWGG | 1 cut(s) | 263 |
| TaaI | ACNGT | 3 cut(s) | 102, 181, 313 |
| TaiI | ACGT | 3 cut(s) | 850, 873, 973 |
| TaqI | TCGA | 4 cut(s) | 364, 713, 754, 771 |
| TasI | AATT | 4 cut(s) | 79, 563, 767, 861 |
| TfiI | GAWTC | 2 cut(s) | 197, 388 |
| Tru1I | TTAA | 7 cut(s) | 18, 104, 134, 251, 372, 528, 927 |
| Tru9I | TTAA | 7 cut(s) | 18, 104, 134, 251, 372, 528, 927 |
| TscAI | CASTG | 1 cut(s) | 765 |
| TseFI | GTSAC | 1 cut(s) | 175 |
| Tsp45I | GTSAC | 1 cut(s) | 175 |
| TspDTI | ATGAA | 4 cut(s) | 17, 161, 373, 401 |
| TspGWI | ACGGA | 2 cut(s) | 716, 902 |
| TspRI | CASTG | 1 cut(s) | 765 |
| Tth111I | GACNNNGTC | 1 cut(s) | 889 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 52 |
| Vha464I | CTTAAG | 1 cut(s) | 133 |
| VneI | GTGCAC | 1 cut(s) | 966 |
| VspI | ATTAAT | 1 cut(s) | 18 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 238 |
| XapI | RAATTY | 2 cut(s) | 563, 767 |
| XmiI | GTMKAC | 1 cut(s) | 208 |
| XspI | CTAG | 3 cut(s) | 551, 764, 960 |