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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 3 cut(s) | 18, 97, 424 |
| AccIII | TCCGGA | 1 cut(s) | 298 |
| AciI | CCGC | 6 cut(s) | 26, 83, 115, 387, 422, 424 |
| AcyI | GRCGYC | 2 cut(s) | 127, 147 |
| AfaI | GTAC | 3 cut(s) | 106, 121, 283 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 114, 344, 423 |
| AflIII | ACRYGT | 1 cut(s) | 315 |
| AgsI | TTSAA | 1 cut(s) | 67 |
| AjiI | CACGTC | 2 cut(s) | 10, 316 |
| AluBI | AGCT | 1 cut(s) | 406 |
| AluI | AGCT | 1 cut(s) | 406 |
| Aor13HI | TCCGGA | 1 cut(s) | 298 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 38, 70 |
| AspLEI | GCGC | 2 cut(s) | 97, 252 |
| AspS9I | GGNCC | 2 cut(s) | 77, 419 |
| AsuC2I | CCSGG | 1 cut(s) | 254 |
| AsuHPI | GGTGA | 5 cut(s) | 208, 286, 317, 392, 404 |
| AsuII | TTCGAA | 1 cut(s) | 44 |
| AvaII | GGWCC | 2 cut(s) | 77, 419 |
| BccI | CCATC | 1 cut(s) | 377 |
| BcnI | CCSGG | 1 cut(s) | 254 |
| BfaI | CTAG | 1 cut(s) | 339 |
| BfmI | CTRYAG | 1 cut(s) | 370 |
| BisI | GCNGC | 1 cut(s) | 84 |
| BlsI | GCNGC | 1 cut(s) | 85 |
| Bme1390I | CCNGG | 1 cut(s) | 254 |
| Bme18I | GGWCC | 2 cut(s) | 77, 419 |
| BmgBI | CACGTC | 2 cut(s) | 10, 316 |
| BmgT120I | GGNCC | 2 cut(s) | 77, 419 |
| BmrFI | CCNGG | 1 cut(s) | 254 |
| BmsI | GCATC | 1 cut(s) | 352 |
| Bpu14I | TTCGAA | 1 cut(s) | 44 |
| BpuMI | CCSGG | 1 cut(s) | 254 |
| BsaHI | GRCGYC | 2 cut(s) | 127, 147 |
| BsaJI | CCNNGG | 3 cut(s) | 132, 285, 422 |
| BsaWI | WCCGGW | 2 cut(s) | 298, 416 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 114, 344, 423 |
| BseAI | TCCGGA | 1 cut(s) | 298 |
| BseDI | CCNNGG | 3 cut(s) | 132, 285, 422 |
| BseGI | GGATG | 2 cut(s) | 211, 367 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 114, 344, 423 |
| Bsh1236I | CGCG | 3 cut(s) | 18, 97, 424 |
| BsiSI | CCGG | 4 cut(s) | 80, 254, 299, 417 |
| BslFI | GGGAC | 1 cut(s) | 114 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 114, 344, 423 |
| BsmFI | GGGAC | 1 cut(s) | 114 |
| Bsp119I | TTCGAA | 1 cut(s) | 44 |
| Bsp13I | TCCGGA | 1 cut(s) | 298 |
| Bsp1407I | TGTACA | 1 cut(s) | 119 |
| Bsp19I | CCATGG | 2 cut(s) | 132, 285 |
| BspACI | CCGC | 6 cut(s) | 26, 83, 115, 387, 422, 424 |
| BspEI | TCCGGA | 1 cut(s) | 298 |
| BspFNI | CGCG | 3 cut(s) | 18, 97, 424 |
| BspT104I | TTCGAA | 1 cut(s) | 44 |
| BsrGI | TGTACA | 1 cut(s) | 119 |
| BssECI | CCNNGG | 3 cut(s) | 132, 285, 422 |
| BssNI | GRCGYC | 2 cut(s) | 127, 147 |
| BssT1I | CCWWGG | 2 cut(s) | 132, 285 |
| Bst6I | CTCTTC | 1 cut(s) | 41 |
| BstACI | GRCGYC | 2 cut(s) | 127, 147 |
| BstAUI | TGTACA | 1 cut(s) | 119 |
| BstBI | TTCGAA | 1 cut(s) | 44 |
| BstDEI | CTNAG | 2 cut(s) | 87, 407 |
| BstDSI | CCRYGG | 3 cut(s) | 132, 285, 422 |
| BstF5I | GGATG | 2 cut(s) | 211, 367 |
| BstFNI | CGCG | 3 cut(s) | 18, 97, 424 |
| BstHHI | GCGC | 2 cut(s) | 97, 252 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 155 |
| BstSCI | CCNGG | 1 cut(s) | 252 |
| BstSFI | CTRYAG | 1 cut(s) | 370 |
| BstUI | CGCG | 3 cut(s) | 18, 97, 424 |
| BtgI | CCRYGG | 3 cut(s) | 132, 285, 422 |
| BtrI | CACGTC | 2 cut(s) | 10, 316 |
| BtsCI | GGATG | 2 cut(s) | 211, 367 |
| CfoI | GCGC | 2 cut(s) | 97, 252 |
| Cfr13I | GGNCC | 2 cut(s) | 77, 419 |
| Cfr42I | CCGCGG | 1 cut(s) | 425 |
| CpoI | CGGWCCG | 1 cut(s) | 419 |
| CseI | GACGC | 2 cut(s) | 116, 155 |
| Csp6I | GTAC | 3 cut(s) | 105, 120, 282 |
| CspI | CGGWCCG | 1 cut(s) | 419 |
| CviAII | CATG | 3 cut(s) | 123, 133, 286 |
| CviJI | RGCY | 3 cut(s) | 86, 269, 406 |
| CviKI_1 | RGCY | 3 cut(s) | 86, 269, 406 |
| CviQI | GTAC | 3 cut(s) | 105, 120, 282 |
| DdeI | CTNAG | 2 cut(s) | 87, 407 |
| Eam1104I | CTCTTC | 1 cut(s) | 41 |
| EarI | CTCTTC | 1 cut(s) | 41 |
| Eco130I | CCWWGG | 2 cut(s) | 132, 285 |
| Eco32I | GATATC | 1 cut(s) | 166 |
| Eco47I | GGWCC | 2 cut(s) | 77, 419 |
| EcoRV | GATATC | 1 cut(s) | 166 |
| EcoT14I | CCWWGG | 2 cut(s) | 132, 285 |
| ErhI | CCWWGG | 2 cut(s) | 132, 285 |
| FaeI | CATG | 3 cut(s) | 126, 136, 289 |
| FaiI | YATR | 9 cut(s) | 124, 134, 176, 189, 287, 311, 321, 357, 372 |
| FaqI | GGGAC | 1 cut(s) | 114 |
| FatI | CATG | 3 cut(s) | 122, 132, 285 |
| FauI | CCCGC | 1 cut(s) | 19 |
| Fnu4HI | GCNGC | 1 cut(s) | 84 |
| FokI | GGATG | 2 cut(s) | 218, 374 |
| Fsp4HI | GCNGC | 1 cut(s) | 84 |
| FspBI | CTAG | 1 cut(s) | 339 |
| GlaI | GCGC | 2 cut(s) | 96, 251 |
| GluI | GCNGC | 1 cut(s) | 84 |
| HapII | CCGG | 4 cut(s) | 80, 254, 299, 417 |
| HgaI | GACGC | 2 cut(s) | 116, 155 |
| HhaI | GCGC | 2 cut(s) | 97, 252 |
| Hin1I | GRCGYC | 2 cut(s) | 127, 147 |
| Hin1II | CATG | 3 cut(s) | 126, 136, 289 |
| Hin6I | GCGC | 2 cut(s) | 95, 250 |
| HinP1I | GCGC | 2 cut(s) | 95, 250 |
| HinfI | GANTC | 2 cut(s) | 53, 183 |
| HpaII | CCGG | 4 cut(s) | 80, 254, 299, 417 |
| HphI | GGTGA | 5 cut(s) | 208, 286, 317, 392, 404 |
| Hpy166II | GTNNAC | 1 cut(s) | 120 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 170 |
| Hpy188III | TCNNGA | 1 cut(s) | 299 |
| Hpy8I | GTNNAC | 1 cut(s) | 120 |
| HpyAV | CCTTC | 2 cut(s) | 193, 296 |
| HpyCH4IV | ACGT | 2 cut(s) | 9, 315 |
| HpyCH4V | TGCA | 1 cut(s) | 158 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 155 |
| HpyF3I | CTNAG | 2 cut(s) | 87, 407 |
| HpySE526I | ACGT | 2 cut(s) | 9, 315 |
| Hsp92I | GRCGYC | 2 cut(s) | 127, 147 |
| Hsp92II | CATG | 3 cut(s) | 126, 136, 289 |
| HspAI | GCGC | 2 cut(s) | 95, 250 |
| Kpn2I | TCCGGA | 1 cut(s) | 298 |
| KspI | CCGCGG | 1 cut(s) | 425 |
| LmnI | GCTCC | 1 cut(s) | 403 |
| LpnPI | CCDG | 4 cut(s) | 20, 93, 267, 312 |
| LweI | GCATC | 1 cut(s) | 352 |
| MaeI | CTAG | 1 cut(s) | 339 |
| MaeII | ACGT | 2 cut(s) | 9, 315 |
| MboII | GAAGA | 3 cut(s) | 58, 79, 111 |
| MluCI | AATT | 3 cut(s) | 109, 137, 330 |
| MlyI | GAGTC | 2 cut(s) | 62, 192 |
| MnlI | CCTC | 6 cut(s) | 42, 164, 187, 270, 370, 388 |
| MroI | TCCGGA | 1 cut(s) | 298 |
| MspA1I | CMGCKG | 1 cut(s) | 424 |
| MspI | CCGG | 4 cut(s) | 80, 254, 299, 417 |
| MspR9I | CCNGG | 1 cut(s) | 254 |
| MvnI | CGCG | 3 cut(s) | 18, 97, 424 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 155 |
| NciI | CCSGG | 1 cut(s) | 254 |
| NcoI | CCATGG | 2 cut(s) | 132, 285 |
| NlaIII | CATG | 3 cut(s) | 126, 136, 289 |
| NspV | TTCGAA | 1 cut(s) | 44 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 15 |
| PkrI | GCNGC | 1 cut(s) | 85 |
| PleI | GAGTC | 2 cut(s) | 61, 191 |
| PpsI | GAGTC | 2 cut(s) | 61, 191 |
| PspPI | GGNCC | 2 cut(s) | 77, 419 |
| RsaI | GTAC | 3 cut(s) | 106, 121, 283 |
| RsaNI | GTAC | 3 cut(s) | 105, 120, 282 |
| Rsr2I | CGGWCCG | 1 cut(s) | 419 |
| RsrII | CGGWCCG | 1 cut(s) | 419 |
| SacII | CCGCGG | 1 cut(s) | 425 |
| SatI | GCNGC | 1 cut(s) | 84 |
| Sau96I | GGNCC | 2 cut(s) | 77, 419 |
| SchI | GAGTC | 2 cut(s) | 62, 192 |
| ScrFI | CCNGG | 1 cut(s) | 254 |
| SetI | ASST | 8 cut(s) | 12, 175, 198, 204, 307, 318, 371, 408 |
| SfaNI | GCATC | 1 cut(s) | 352 |
| SfcI | CTRYAG | 1 cut(s) | 370 |
| Sfr303I | CCGCGG | 1 cut(s) | 425 |
| SfuI | TTCGAA | 1 cut(s) | 44 |
| SgrBI | CCGCGG | 1 cut(s) | 425 |
| SinI | GGWCC | 2 cut(s) | 77, 419 |
| Sse9I | AATT | 3 cut(s) | 109, 137, 330 |
| SsiI | CCGC | 6 cut(s) | 26, 83, 115, 387, 422, 424 |
| SspMI | CTAG | 1 cut(s) | 339 |
| StyD4I | CCNGG | 1 cut(s) | 252 |
| StyI | CCWWGG | 2 cut(s) | 132, 285 |
| TaiI | ACGT | 2 cut(s) | 12, 318 |
| TaqI | TCGA | 2 cut(s) | 44, 291 |
| TasI | AATT | 3 cut(s) | 109, 137, 330 |
| TatI | WGTACW | 1 cut(s) | 119 |
| TauI | GCSGC | 1 cut(s) | 86 |
| VpaK11BI | GGWCC | 2 cut(s) | 77, 419 |
| XspI | CTAG | 1 cut(s) | 339 |