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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 522 |
| Acc36I | ACCTGC | 1 cut(s) | 198 |
| AccB1I | GGYRCC | 2 cut(s) | 145, 214 |
| AciI | CCGC | 1 cut(s) | 292 |
| AclI | AACGTT | 1 cut(s) | 742 |
| AclWI | GGATC | 1 cut(s) | 415 |
| AcsI | RAATTY | 2 cut(s) | 463, 532 |
| AcyI | GRCGYC | 2 cut(s) | 146, 519 |
| AfaI | GTAC | 2 cut(s) | 12, 733 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 164, 437 |
| AgsI | TTSAA | 2 cut(s) | 463, 504 |
| AjnI | CCWGG | 3 cut(s) | 119, 703, 724 |
| AluBI | AGCT | 2 cut(s) | 558, 633 |
| AluI | AGCT | 2 cut(s) | 558, 633 |
| Alw26I | GTCTC | 1 cut(s) | 251 |
| AlwI | GGATC | 1 cut(s) | 415 |
| Ama87I | CYCGRG | 1 cut(s) | 172 |
| AoxI | GGCC | 1 cut(s) | 592 |
| ApeKI | GCWGC | 2 cut(s) | 112, 309 |
| ApoI | RAATTY | 2 cut(s) | 463, 532 |
| AseI | ATTAAT | 1 cut(s) | 582 |
| AspLEI | GCGC | 1 cut(s) | 148 |
| AspS9I | GGNCC | 4 cut(s) | 574, 593, 620, 676 |
| AsuC2I | CCSGG | 1 cut(s) | 372 |
| AsuHPI | GGTGA | 5 cut(s) | 70, 232, 340, 445, 581 |
| AsuNHI | GCTAGC | 1 cut(s) | 629 |
| AvaI | CYCGRG | 1 cut(s) | 172 |
| AvaII | GGWCC | 3 cut(s) | 574, 620, 676 |
| BanI | GGYRCC | 2 cut(s) | 145, 214 |
| BanII | GRGCYC | 1 cut(s) | 445 |
| BbvI | GCAGC | 2 cut(s) | 99, 321 |
| BccI | CCATC | 5 cut(s) | 229, 239, 325, 454, 611 |
| BceAI | ACGGC | 1 cut(s) | 65 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 373, 407 |
| BciT130I | CCWGG | 3 cut(s) | 121, 705, 726 |
| BcnI | CCSGG | 1 cut(s) | 372 |
| BcoDI | GTCTC | 1 cut(s) | 251 |
| BfaI | CTAG | 2 cut(s) | 555, 630 |
| BfoI | RGCGCY | 1 cut(s) | 149 |
| BfuAI | ACCTGC | 1 cut(s) | 198 |
| BisI | GCNGC | 2 cut(s) | 113, 310 |
| BlsI | GCNGC | 2 cut(s) | 114, 311 |
| Bme1390I | CCNGG | 4 cut(s) | 121, 372, 705, 726 |
| Bme18I | GGWCC | 3 cut(s) | 574, 620, 676 |
| BmeT110I | CYCGRG | 1 cut(s) | 172 |
| BmgT120I | GGNCC | 4 cut(s) | 574, 593, 620, 676 |
| BmiI | GGNNCC | 3 cut(s) | 147, 216, 444 |
| BmrFI | CCNGG | 4 cut(s) | 121, 372, 705, 726 |
| BmtI | GCTAGC | 1 cut(s) | 633 |
| BpuMI | CCSGG | 1 cut(s) | 372 |
| BsaBI | GATNNNNATC | 1 cut(s) | 379 |
| BsaHI | GRCGYC | 2 cut(s) | 146, 519 |
| BsaJI | CCNNGG | 1 cut(s) | 103 |
| BsaWI | WCCGGW | 1 cut(s) | 430 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 26, 56, 684, 714 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 164, 437 |
| Bse118I | RCCGGY | 1 cut(s) | 217 |
| Bse8I | GATNNNNATC | 1 cut(s) | 379 |
| BseBI | CCWGG | 3 cut(s) | 121, 705, 726 |
| BseDI | CCNNGG | 1 cut(s) | 103 |
| BseGI | GGATG | 1 cut(s) | 622 |
| BseJI | GATNNNNATC | 1 cut(s) | 379 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 164, 437 |
| BseMII | CTCAG | 2 cut(s) | 242, 573 |
| BseXI | GCAGC | 2 cut(s) | 99, 321 |
| BshFI | GGCC | 1 cut(s) | 594 |
| BshNI | GGYRCC | 2 cut(s) | 145, 214 |
| BsiHKCI | CYCGRG | 1 cut(s) | 172 |
| BsiSI | CCGG | 5 cut(s) | 218, 278, 313, 371, 431 |
| BslFI | GGGAC | 2 cut(s) | 109, 616 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 164, 437 |
| BsmAI | GTCTC | 1 cut(s) | 251 |
| BsmBI | CGTCTC | 1 cut(s) | 251 |
| BsmFI | GGGAC | 2 cut(s) | 109, 616 |
| BsnI | GGCC | 1 cut(s) | 594 |
| BsoBI | CYCGRG | 1 cut(s) | 172 |
| Bsp1286I | GDGCHC | 1 cut(s) | 445 |
| Bsp143I | GATC | 3 cut(s) | 151, 176, 407 |
| BspACI | CCGC | 1 cut(s) | 292 |
| BspANI | GGCC | 1 cut(s) | 594 |
| BspCNI | CTCAG | 2 cut(s) | 241, 572 |
| BspLI | GGNNCC | 3 cut(s) | 147, 216, 444 |
| BspMI | ACCTGC | 1 cut(s) | 198 |
| BspOI | GCTAGC | 1 cut(s) | 633 |
| BspPI | GGATC | 1 cut(s) | 415 |
| BspT107I | GGYRCC | 2 cut(s) | 145, 214 |
| BsrFI | RCCGGY | 1 cut(s) | 217 |
| BssAI | RCCGGY | 1 cut(s) | 217 |
| BssECI | CCNNGG | 1 cut(s) | 103 |
| BssMI | GATC | 3 cut(s) | 151, 176, 407 |
| BssNI | GRCGYC | 2 cut(s) | 146, 519 |
| BssT1I | CCWWGG | 1 cut(s) | 103 |
| Bst2UI | CCWGG | 3 cut(s) | 121, 705, 726 |
| Bst4CI | ACNGT | 2 cut(s) | 262, 325 |
| Bst6I | CTCTTC | 1 cut(s) | 281 |
| BstACI | GRCGYC | 2 cut(s) | 146, 519 |
| BstC8I | GCNNGC | 2 cut(s) | 414, 631 |
| BstDEI | CTNAG | 2 cut(s) | 228, 559 |
| BstF5I | GGATG | 1 cut(s) | 622 |
| BstH2I | RGCGCY | 1 cut(s) | 149 |
| BstHHI | GCGC | 1 cut(s) | 148 |
| BstKTI | GATC | 3 cut(s) | 154, 179, 410 |
| BstMAI | GTCTC | 1 cut(s) | 251 |
| BstMBI | GATC | 3 cut(s) | 151, 176, 407 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 44 |
| BstNI | CCWGG | 3 cut(s) | 121, 705, 726 |
| BstNSI | RCATGY | 1 cut(s) | 547 |
| BstSCI | CCNGG | 4 cut(s) | 119, 370, 703, 724 |
| BstV1I | GCAGC | 2 cut(s) | 99, 321 |
| BsuRI | GGCC | 1 cut(s) | 594 |
| BtgZI | GCGATG | 1 cut(s) | 248 |
| BtsCI | GGATG | 1 cut(s) | 622 |
| BveI | ACCTGC | 1 cut(s) | 198 |
| Cac8I | GCNNGC | 2 cut(s) | 414, 631 |
| CfoI | GCGC | 1 cut(s) | 148 |
| Cfr10I | RCCGGY | 1 cut(s) | 217 |
| Cfr13I | GGNCC | 4 cut(s) | 574, 593, 620, 676 |
| Csp6I | GTAC | 2 cut(s) | 11, 732 |
| CviAII | CATG | 5 cut(s) | 39, 538, 544, 636, 673 |
| CviJI | RGCY | 7 cut(s) | 132, 312, 443, 558, 594, 633, 669 |
| CviKI_1 | RGCY | 7 cut(s) | 132, 312, 443, 558, 594, 633, 669 |
| CviQI | GTAC | 2 cut(s) | 11, 732 |
| DdeI | CTNAG | 2 cut(s) | 228, 559 |
| DinI | GGCGCC | 1 cut(s) | 147 |
| DpnI | GATC | 3 cut(s) | 153, 178, 409 |
| DpnII | GATC | 3 cut(s) | 151, 176, 407 |
| Eam1104I | CTCTTC | 1 cut(s) | 281 |
| EarI | CTCTTC | 1 cut(s) | 281 |
| EciI | GGCGGA | 1 cut(s) | 307 |
| Eco130I | CCWWGG | 1 cut(s) | 103 |
| Eco24I | GRGCYC | 1 cut(s) | 445 |
| Eco47I | GGWCC | 3 cut(s) | 574, 620, 676 |
| Eco88I | CYCGRG | 1 cut(s) | 172 |
| EcoRI | GAATTC | 1 cut(s) | 463 |
| EcoRII | CCWGG | 3 cut(s) | 119, 703, 724 |
| EcoT14I | CCWWGG | 1 cut(s) | 103 |
| EcoT38I | GRGCYC | 1 cut(s) | 445 |
| EgeI | GGCGCC | 1 cut(s) | 147 |
| EheI | GGCGCC | 1 cut(s) | 147 |
| ErhI | CCWWGG | 1 cut(s) | 103 |
| Esp3I | CGTCTC | 1 cut(s) | 251 |
| FaeI | CATG | 5 cut(s) | 42, 541, 547, 639, 676 |
| FaiI | YATR | 7 cut(s) | 6, 40, 539, 545, 637, 674, 687 |
| FaqI | GGGAC | 2 cut(s) | 109, 616 |
| FatI | CATG | 5 cut(s) | 38, 537, 543, 635, 672 |
| Fnu4HI | GCNGC | 2 cut(s) | 113, 310 |
| FokI | GGATG | 1 cut(s) | 629 |
| FriOI | GRGCYC | 1 cut(s) | 445 |
| Fsp4HI | GCNGC | 2 cut(s) | 113, 310 |
| FspBI | CTAG | 2 cut(s) | 555, 630 |
| GlaI | GCGC | 1 cut(s) | 147 |
| GluI | GCNGC | 2 cut(s) | 113, 310 |
| HaeII | RGCGCY | 1 cut(s) | 149 |
| HaeIII | GGCC | 1 cut(s) | 594 |
| HapII | CCGG | 5 cut(s) | 218, 278, 313, 371, 431 |
| HhaI | GCGC | 1 cut(s) | 148 |
| Hin1I | GRCGYC | 2 cut(s) | 146, 519 |
| Hin1II | CATG | 5 cut(s) | 42, 541, 547, 639, 676 |
| Hin6I | GCGC | 1 cut(s) | 146 |
| HinP1I | GCGC | 1 cut(s) | 146 |
| HinfI | GANTC | 3 cut(s) | 427, 604, 721 |
| HpaII | CCGG | 5 cut(s) | 218, 278, 313, 371, 431 |
| HphI | GGTGA | 5 cut(s) | 70, 232, 340, 445, 581 |
| Hpy188I | TCNGA | 2 cut(s) | 588, 609 |
| Hpy188III | TCNNGA | 3 cut(s) | 172, 174, 679 |
| HpyAV | CCTTC | 4 cut(s) | 25, 168, 190, 332 |
| HpyCH4III | ACNGT | 2 cut(s) | 262, 325 |
| HpyCH4IV | ACGT | 3 cut(s) | 519, 730, 742 |
| HpyCH4V | TGCA | 3 cut(s) | 530, 541, 547 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 44 |
| HpyF3I | CTNAG | 2 cut(s) | 228, 559 |
| HpySE526I | ACGT | 3 cut(s) | 519, 730, 742 |
| Hsp92I | GRCGYC | 2 cut(s) | 146, 519 |
| Hsp92II | CATG | 5 cut(s) | 42, 541, 547, 639, 676 |
| HspAI | GCGC | 1 cut(s) | 146 |
| KasI | GGCGCC | 1 cut(s) | 145 |
| Kzo9I | GATC | 3 cut(s) | 151, 176, 407 |
| LmnI | GCTCC | 1 cut(s) | 448 |
| Lsp1109I | GCAGC | 2 cut(s) | 99, 321 |
| MaeI | CTAG | 2 cut(s) | 555, 630 |
| MaeII | ACGT | 3 cut(s) | 519, 730, 742 |
| MaeIII | GTNAC | 3 cut(s) | 220, 319, 709 |
| MalI | GATC | 3 cut(s) | 153, 178, 409 |
| MboI | GATC | 3 cut(s) | 151, 176, 407 |
| MboII | GAAGA | 6 cut(s) | 40, 69, 197, 298, 441, 543 |
| MhlI | GDGCHC | 1 cut(s) | 445 |
| MluCI | AATT | 5 cut(s) | 126, 296, 463, 532, 579 |
| Mly113I | GGCGCC | 1 cut(s) | 146 |
| MlyI | GAGTC | 3 cut(s) | 436, 598, 730 |
| MmeI | TCCRAC | 1 cut(s) | 684 |
| MseI | TTAA | 1 cut(s) | 582 |
| MslI | CAYNNNNRTG | 1 cut(s) | 542 |
| MspI | CCGG | 5 cut(s) | 218, 278, 313, 371, 431 |
| MspR9I | CCNGG | 4 cut(s) | 121, 372, 705, 726 |
| MvaI | CCWGG | 3 cut(s) | 121, 705, 726 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 44 |
| NarI | GGCGCC | 1 cut(s) | 146 |
| NciI | CCSGG | 1 cut(s) | 372 |
| NdeII | GATC | 3 cut(s) | 151, 176, 407 |
| NheI | GCTAGC | 1 cut(s) | 629 |
| NlaIII | CATG | 5 cut(s) | 42, 541, 547, 639, 676 |
| NlaIV | GGNNCC | 3 cut(s) | 147, 216, 444 |
| NmuCI | GTSAC | 2 cut(s) | 220, 319 |
| NspI | RCATGY | 1 cut(s) | 547 |
| PaeR7I | CTCGAG | 1 cut(s) | 172 |
| PflFI | GACNNNGTC | 1 cut(s) | 139 |
| PfoI | TCCNGGA | 2 cut(s) | 370, 724 |
| PkrI | GCNGC | 2 cut(s) | 114, 311 |
| PleI | GAGTC | 3 cut(s) | 435, 598, 729 |
| PluTI | GGCGCC | 1 cut(s) | 149 |
| PpsI | GAGTC | 3 cut(s) | 435, 598, 729 |
| PshBI | ATTAAT | 1 cut(s) | 582 |
| Psp1406I | AACGTT | 1 cut(s) | 742 |
| Psp6I | CCWGG | 3 cut(s) | 119, 703, 724 |
| PspGI | CCWGG | 3 cut(s) | 119, 703, 724 |
| PspN4I | GGNNCC | 3 cut(s) | 147, 216, 444 |
| PspPI | GGNCC | 4 cut(s) | 574, 593, 620, 676 |
| PsyI | GACNNNGTC | 1 cut(s) | 139 |
| RsaI | GTAC | 2 cut(s) | 12, 733 |
| RsaNI | GTAC | 2 cut(s) | 11, 732 |
| RseI | CAYNNNNRTG | 1 cut(s) | 542 |
| SaqAI | TTAA | 1 cut(s) | 582 |
| SatI | GCNGC | 2 cut(s) | 113, 310 |
| Sau3AI | GATC | 3 cut(s) | 151, 176, 407 |
| Sau96I | GGNCC | 4 cut(s) | 574, 593, 620, 676 |
| SchI | GAGTC | 3 cut(s) | 436, 598, 730 |
| ScrFI | CCNGG | 4 cut(s) | 121, 372, 705, 726 |
| SduI | GDGCHC | 1 cut(s) | 445 |
| SfoI | GGCGCC | 1 cut(s) | 147 |
| Sfr274I | CTCGAG | 1 cut(s) | 172 |
| SinI | GGWCC | 3 cut(s) | 574, 620, 676 |
| SlaI | CTCGAG | 1 cut(s) | 172 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 542 |
| SmlI | CTYRAG | 1 cut(s) | 172 |
| SmoI | CTYRAG | 1 cut(s) | 172 |
| Sse9I | AATT | 5 cut(s) | 126, 296, 463, 532, 579 |
| SsiI | CCGC | 1 cut(s) | 292 |
| SspDI | GGCGCC | 1 cut(s) | 145 |
| SspI | AATATT | 1 cut(s) | 472 |
| SspMI | CTAG | 2 cut(s) | 555, 630 |
| StyD4I | CCNGG | 4 cut(s) | 119, 370, 703, 724 |
| StyI | CCWWGG | 1 cut(s) | 103 |
| TaaI | ACNGT | 2 cut(s) | 262, 325 |
| TaiI | ACGT | 3 cut(s) | 522, 733, 745 |
| TaqI | TCGA | 3 cut(s) | 173, 383, 719 |
| TasI | AATT | 5 cut(s) | 126, 296, 463, 532, 579 |
| TatI | WGTACW | 1 cut(s) | 10 |
| Tru1I | TTAA | 1 cut(s) | 582 |
| Tru9I | TTAA | 1 cut(s) | 582 |
| TseFI | GTSAC | 2 cut(s) | 220, 319 |
| TseI | GCWGC | 2 cut(s) | 112, 309 |
| Tsp45I | GTSAC | 2 cut(s) | 220, 319 |
| TspGWI | ACGGA | 1 cut(s) | 38 |
| Tth111I | GACNNNGTC | 1 cut(s) | 139 |
| VpaK11BI | GGWCC | 3 cut(s) | 574, 620, 676 |
| VspI | ATTAAT | 1 cut(s) | 582 |
| XapI | RAATTY | 2 cut(s) | 463, 532 |
| XceI | RCATGY | 1 cut(s) | 547 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 686 |
| XhoI | CTCGAG | 1 cut(s) | 172 |
| XspI | CTAG | 2 cut(s) | 555, 630 |
| ZraI | GACGTC | 1 cut(s) | 520 |