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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 90 |
| AciI | CCGC | 5 cut(s) | 28, 56, 131, 145, 153 |
| AclWI | GGATC | 2 cut(s) | 74, 82 |
| AcsI | RAATTY | 2 cut(s) | 104, 241 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 210, 217, 414 |
| AluBI | AGCT | 2 cut(s) | 265, 374 |
| AluI | AGCT | 2 cut(s) | 265, 374 |
| Alw26I | GTCTC | 2 cut(s) | 110, 428 |
| AlwI | GGATC | 2 cut(s) | 74, 82 |
| Ama87I | CYCGRG | 1 cut(s) | 139 |
| Aor13HI | TCCGGA | 1 cut(s) | 90 |
| AoxI | GGCC | 4 cut(s) | 224, 273, 282, 397 |
| ApoI | RAATTY | 2 cut(s) | 104, 241 |
| AspS9I | GGNCC | 2 cut(s) | 224, 283 |
| AsuC2I | CCSGG | 2 cut(s) | 211, 228 |
| AsuHPI | GGTGA | 2 cut(s) | 73, 498 |
| AvaI | CYCGRG | 1 cut(s) | 139 |
| BccI | CCATC | 3 cut(s) | 188, 213, 215 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 314, 348 |
| BcnI | CCSGG | 2 cut(s) | 211, 228 |
| BcoDI | GTCTC | 2 cut(s) | 110, 428 |
| BfaI | CTAG | 2 cut(s) | 35, 99 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 281 |
| Bme1390I | CCNGG | 2 cut(s) | 211, 228 |
| BmeT110I | CYCGRG | 1 cut(s) | 139 |
| BmgT120I | GGNCC | 2 cut(s) | 224, 283 |
| BmiI | GGNNCC | 1 cut(s) | 285 |
| BmrFI | CCNGG | 2 cut(s) | 211, 228 |
| BmsI | GCATC | 1 cut(s) | 502 |
| BoxI | GACNNNNGTC | 1 cut(s) | 327 |
| BpuMI | CCSGG | 2 cut(s) | 211, 228 |
| BsaJI | CCNNGG | 3 cut(s) | 209, 276, 413 |
| BsaWI | WCCGGW | 3 cut(s) | 90, 163, 387 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 394, 421, 424, 451 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 210, 217, 414 |
| BseAI | TCCGGA | 1 cut(s) | 90 |
| BseDI | CCNNGG | 3 cut(s) | 209, 276, 413 |
| BseGI | GGATG | 4 cut(s) | 199, 205, 226, 352 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 210, 217, 414 |
| BseRI | GAGGAG | 1 cut(s) | 20 |
| BsgI | GTGCAG | 1 cut(s) | 414 |
| Bsh1285I | CGRYCG | 1 cut(s) | 292 |
| BshFI | GGCC | 4 cut(s) | 226, 275, 284, 399 |
| BsiEI | CGRYCG | 1 cut(s) | 292 |
| BsiHKCI | CYCGRG | 1 cut(s) | 139 |
| BsiSI | CCGG | 5 cut(s) | 91, 164, 211, 227, 388 |
| BslFI | GGGAC | 1 cut(s) | 391 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 210, 217, 414 |
| BsmAI | GTCTC | 2 cut(s) | 110, 428 |
| BsmFI | GGGAC | 1 cut(s) | 391 |
| BsnI | GGCC | 4 cut(s) | 226, 275, 284, 399 |
| BsoBI | CYCGRG | 1 cut(s) | 139 |
| Bsp13I | TCCGGA | 1 cut(s) | 90 |
| Bsp143I | GATC | 3 cut(s) | 79, 87, 289 |
| BspACI | CCGC | 5 cut(s) | 28, 56, 131, 145, 153 |
| BspANI | GGCC | 4 cut(s) | 226, 275, 284, 399 |
| BspEI | TCCGGA | 1 cut(s) | 90 |
| BspLI | GGNNCC | 1 cut(s) | 285 |
| BspPI | GGATC | 2 cut(s) | 74, 82 |
| BssECI | CCNNGG | 3 cut(s) | 209, 276, 413 |
| BssMI | GATC | 3 cut(s) | 79, 87, 289 |
| Bst4CI | ACNGT | 2 cut(s) | 217, 469 |
| Bst6I | CTCTTC | 1 cut(s) | 45 |
| BstC8I | GCNNGC | 2 cut(s) | 200, 397 |
| BstDEI | CTNAG | 1 cut(s) | 270 |
| BstF5I | GGATG | 4 cut(s) | 199, 205, 226, 352 |
| BstKTI | GATC | 3 cut(s) | 82, 90, 292 |
| BstMAI | GTCTC | 2 cut(s) | 110, 428 |
| BstMBI | GATC | 3 cut(s) | 79, 87, 289 |
| BstMCI | CGRYCG | 1 cut(s) | 292 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 232, 281 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 327 |
| BstSCI | CCNGG | 2 cut(s) | 209, 226 |
| BstX2I | RGATCY | 1 cut(s) | 87 |
| BstYI | RGATCY | 1 cut(s) | 87 |
| BsuRI | GGCC | 4 cut(s) | 226, 275, 284, 399 |
| BtsCI | GGATG | 4 cut(s) | 199, 205, 226, 352 |
| Cac8I | GCNNGC | 2 cut(s) | 200, 397 |
| Cfr13I | GGNCC | 2 cut(s) | 224, 283 |
| CviJI | RGCY | 8 cut(s) | 198, 226, 265, 275, 284, 374, 399, 455 |
| CviKI_1 | RGCY | 8 cut(s) | 198, 226, 265, 275, 284, 374, 399, 455 |
| DdeI | CTNAG | 1 cut(s) | 270 |
| DpnI | GATC | 3 cut(s) | 81, 89, 291 |
| DpnII | GATC | 3 cut(s) | 79, 87, 289 |
| Eam1104I | CTCTTC | 1 cut(s) | 45 |
| EarI | CTCTTC | 1 cut(s) | 45 |
| EciI | GGCGGA | 2 cut(s) | 71, 160 |
| Eco147I | AGGCCT | 2 cut(s) | 275, 399 |
| Eco88I | CYCGRG | 1 cut(s) | 139 |
| EcoO109I | RGGNCCY | 1 cut(s) | 283 |
| EcoRI | GAATTC | 1 cut(s) | 241 |
| FaqI | GGGAC | 1 cut(s) | 391 |
| FauI | CCCGC | 1 cut(s) | 146 |
| FokI | GGATG | 4 cut(s) | 192, 206, 233, 359 |
| FspBI | CTAG | 2 cut(s) | 35, 99 |
| HaeIII | GGCC | 4 cut(s) | 226, 275, 284, 399 |
| HapII | CCGG | 5 cut(s) | 91, 164, 211, 227, 388 |
| HincII | GTYRAC | 3 cut(s) | 42, 255, 322 |
| HindII | GTYRAC | 3 cut(s) | 42, 255, 322 |
| HindIII | AAGCTT | 1 cut(s) | 372 |
| HinfI | GANTC | 2 cut(s) | 328, 436 |
| HpaII | CCGG | 5 cut(s) | 91, 164, 211, 227, 388 |
| HphI | GGTGA | 2 cut(s) | 73, 498 |
| Hpy166II | GTNNAC | 4 cut(s) | 42, 255, 322, 385 |
| Hpy188I | TCNGA | 3 cut(s) | 175, 280, 414 |
| Hpy188III | TCNNGA | 2 cut(s) | 91, 344 |
| Hpy8I | GTNNAC | 4 cut(s) | 42, 255, 322, 385 |
| HpyCH4III | ACNGT | 2 cut(s) | 217, 469 |
| HpyCH4IV | ACGT | 1 cut(s) | 404 |
| HpyCH4V | TGCA | 3 cut(s) | 395, 427, 515 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 232, 281 |
| HpyF3I | CTNAG | 1 cut(s) | 270 |
| HpySE526I | ACGT | 1 cut(s) | 404 |
| Kpn2I | TCCGGA | 1 cut(s) | 90 |
| Kzo9I | GATC | 3 cut(s) | 79, 87, 289 |
| LmnI | GCTCC | 1 cut(s) | 262 |
| LpnPI | CCDG | 9 cut(s) | 104, 177, 224, 240, 313, 345, 381, 401, 522 |
| LweI | GCATC | 1 cut(s) | 502 |
| MaeI | CTAG | 2 cut(s) | 35, 99 |
| MaeII | ACGT | 1 cut(s) | 404 |
| MaeIII | GTNAC | 2 cut(s) | 463, 472 |
| MalI | GATC | 3 cut(s) | 81, 89, 291 |
| MboI | GATC | 3 cut(s) | 79, 87, 289 |
| MboII | GAAGA | 5 cut(s) | 62, 162, 371, 508, 513 |
| MflI | RGATCY | 1 cut(s) | 87 |
| MluCI | AATT | 3 cut(s) | 104, 241, 378 |
| MlyI | GAGTC | 2 cut(s) | 337, 430 |
| MmeI | TCCRAC | 2 cut(s) | 93, 469 |
| MnlI | CCTC | 8 cut(s) | 40, 46, 52, 121, 274, 286, 408, 420 |
| MroI | TCCGGA | 1 cut(s) | 90 |
| MseI | TTAA | 1 cut(s) | 377 |
| MspI | CCGG | 5 cut(s) | 91, 164, 211, 227, 388 |
| MspR9I | CCNGG | 2 cut(s) | 211, 228 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 232, 281 |
| NciI | CCSGG | 2 cut(s) | 211, 228 |
| NdeII | GATC | 3 cut(s) | 79, 87, 289 |
| NlaIV | GGNNCC | 1 cut(s) | 285 |
| NmuCI | GTSAC | 1 cut(s) | 472 |
| PceI | AGGCCT | 2 cut(s) | 275, 399 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 410 |
| Ple19I | CGATCG | 1 cut(s) | 292 |
| PleI | GAGTC | 2 cut(s) | 336, 430 |
| PpsI | GAGTC | 2 cut(s) | 336, 430 |
| PshAI | GACNNNNGTC | 1 cut(s) | 327 |
| PspN4I | GGNNCC | 1 cut(s) | 285 |
| PspPI | GGNCC | 2 cut(s) | 224, 283 |
| PsuI | RGATCY | 1 cut(s) | 87 |
| PvuI | CGATCG | 1 cut(s) | 292 |
| SaqAI | TTAA | 1 cut(s) | 377 |
| Sau3AI | GATC | 3 cut(s) | 79, 87, 289 |
| Sau96I | GGNCC | 2 cut(s) | 224, 283 |
| SchI | GAGTC | 2 cut(s) | 337, 430 |
| ScrFI | CCNGG | 2 cut(s) | 211, 228 |
| SetI | ASST | 6 cut(s) | 63, 100, 267, 376, 407, 419 |
| SfaNI | GCATC | 1 cut(s) | 502 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 281 |
| Sse9I | AATT | 3 cut(s) | 104, 241, 378 |
| SseBI | AGGCCT | 2 cut(s) | 275, 399 |
| SsiI | CCGC | 5 cut(s) | 28, 56, 131, 145, 153 |
| SspMI | CTAG | 2 cut(s) | 35, 99 |
| StuI | AGGCCT | 2 cut(s) | 275, 399 |
| StyD4I | CCNGG | 2 cut(s) | 209, 226 |
| TaaI | ACNGT | 2 cut(s) | 217, 469 |
| TaiI | ACGT | 1 cut(s) | 407 |
| TasI | AATT | 3 cut(s) | 104, 241, 378 |
| Tru1I | TTAA | 1 cut(s) | 377 |
| Tru9I | TTAA | 1 cut(s) | 377 |
| TseFI | GTSAC | 1 cut(s) | 472 |
| Tsp45I | GTSAC | 1 cut(s) | 472 |
| TspDTI | ATGAA | 1 cut(s) | 509 |
| XapI | RAATTY | 2 cut(s) | 104, 241 |
| XspI | CTAG | 2 cut(s) | 35, 99 |