Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 244, 646 |
| AccII | CGCG | 1 cut(s) | 380 |
| AciI | CCGC | 2 cut(s) | 66, 753 |
| AclI | AACGTT | 1 cut(s) | 367 |
| AclWI | GGATC | 3 cut(s) | 410, 734, 747 |
| AcoI | YGGCCR | 1 cut(s) | 184 |
| AcuI | CTGAAG | 1 cut(s) | 508 |
| AfaI | GTAC | 2 cut(s) | 115, 279 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 656 |
| AgsI | TTSAA | 7 cut(s) | 32, 364, 398, 499, 532, 656, 698 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 93 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 149, 181, 365, 397 |
| AluBI | AGCT | 6 cut(s) | 13, 178, 190, 376, 557, 691 |
| AluI | AGCT | 6 cut(s) | 13, 178, 190, 376, 557, 691 |
| Alw26I | GTCTC | 1 cut(s) | 62 |
| AlwI | GGATC | 3 cut(s) | 410, 734, 747 |
| AoxI | GGCC | 3 cut(s) | 67, 184, 295 |
| ApeKI | GCWGC | 1 cut(s) | 519 |
| AsuHPI | GGTGA | 1 cut(s) | 250 |
| BalI | TGGCCA | 1 cut(s) | 186 |
| BamHI | GGATCC | 1 cut(s) | 739 |
| BanI | GGYRCC | 2 cut(s) | 244, 646 |
| BauI | CACGAG | 1 cut(s) | 435 |
| BbvI | GCAGC | 1 cut(s) | 506 |
| BccI | CCATC | 3 cut(s) | 287, 299, 637 |
| BceAI | ACGGC | 1 cut(s) | 327 |
| BclI | TGATCA | 1 cut(s) | 76 |
| BcoDI | GTCTC | 1 cut(s) | 62 |
| BfaI | CTAG | 2 cut(s) | 255, 299 |
| BisI | GCNGC | 2 cut(s) | 67, 520 |
| BlpI | GCTNAGC | 1 cut(s) | 14 |
| BlsI | GCNGC | 2 cut(s) | 68, 521 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 93 |
| BmiI | GGNNCC | 3 cut(s) | 246, 648, 741 |
| BpmI | CTGGAG | 1 cut(s) | 594 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 14 |
| BsaJI | CCNNGG | 1 cut(s) | 156 |
| BsaWI | WCCGGW | 1 cut(s) | 247 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 656 |
| Bse1I | ACTGG | 2 cut(s) | 577, 650 |
| BseDI | CCNNGG | 1 cut(s) | 156 |
| BseGI | GGATG | 3 cut(s) | 166, 298, 336 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 656 |
| BseMII | CTCAG | 2 cut(s) | 5, 114 |
| BseNI | ACTGG | 2 cut(s) | 577, 650 |
| BseXI | GCAGC | 1 cut(s) | 506 |
| Bsh1236I | CGCG | 1 cut(s) | 380 |
| BshFI | GGCC | 3 cut(s) | 69, 186, 297 |
| BshNI | GGYRCC | 2 cut(s) | 244, 646 |
| BsiSI | CCGG | 1 cut(s) | 248 |
| BslFI | GGGAC | 3 cut(s) | 100, 322, 488 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 656 |
| BsmAI | GTCTC | 1 cut(s) | 62 |
| BsmFI | GGGAC | 3 cut(s) | 100, 322, 488 |
| BsnI | GGCC | 3 cut(s) | 69, 186, 297 |
| Bsp143I | GATC | 4 cut(s) | 76, 415, 475, 739 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 14 |
| BspACI | CCGC | 2 cut(s) | 66, 753 |
| BspANI | GGCC | 3 cut(s) | 69, 186, 297 |
| BspCNI | CTCAG | 2 cut(s) | 6, 115 |
| BspFNI | CGCG | 1 cut(s) | 380 |
| BspLI | GGNNCC | 3 cut(s) | 246, 648, 741 |
| BspPI | GGATC | 3 cut(s) | 410, 734, 747 |
| BspT107I | GGYRCC | 2 cut(s) | 244, 646 |
| BsrI | ACTGG | 2 cut(s) | 577, 650 |
| BssECI | CCNNGG | 1 cut(s) | 156 |
| BssMI | GATC | 4 cut(s) | 76, 415, 475, 739 |
| BssSI | CACGAG | 1 cut(s) | 435 |
| BssT1I | CCWWGG | 1 cut(s) | 156 |
| Bst2BI | CACGAG | 1 cut(s) | 435 |
| Bst4CI | ACNGT | 1 cut(s) | 118 |
| Bst6I | CTCTTC | 1 cut(s) | 65 |
| BstC8I | GCNNGC | 2 cut(s) | 188, 378 |
| BstDEI | CTNAG | 2 cut(s) | 14, 123 |
| BstF5I | GGATG | 3 cut(s) | 166, 298, 336 |
| BstFNI | CGCG | 1 cut(s) | 380 |
| BstKTI | GATC | 4 cut(s) | 79, 418, 478, 742 |
| BstMAI | GTCTC | 1 cut(s) | 62 |
| BstMBI | GATC | 4 cut(s) | 76, 415, 475, 739 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 251 |
| BstUI | CGCG | 1 cut(s) | 380 |
| BstV1I | GCAGC | 1 cut(s) | 506 |
| BstX2I | RGATCY | 1 cut(s) | 739 |
| BstYI | RGATCY | 1 cut(s) | 739 |
| BsuRI | GGCC | 3 cut(s) | 69, 186, 297 |
| BtsCI | GGATG | 3 cut(s) | 166, 298, 336 |
| BtsIMutI | CAGTG | 1 cut(s) | 120 |
| Cac8I | GCNNGC | 2 cut(s) | 188, 378 |
| CseI | GACGC | 1 cut(s) | 207 |
| Csp6I | GTAC | 2 cut(s) | 114, 278 |
| CviAII | CATG | 3 cut(s) | 80, 430, 467 |
| CviQI | GTAC | 2 cut(s) | 114, 278 |
| DdeI | CTNAG | 2 cut(s) | 14, 123 |
| DpnI | GATC | 4 cut(s) | 78, 417, 477, 741 |
| DpnII | GATC | 4 cut(s) | 76, 415, 475, 739 |
| DriI | GACNNNNNGTC | 1 cut(s) | 93 |
| EaeI | YGGCCR | 1 cut(s) | 184 |
| Eam1104I | CTCTTC | 1 cut(s) | 65 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 93 |
| EarI | CTCTTC | 1 cut(s) | 65 |
| Eco130I | CCWWGG | 1 cut(s) | 156 |
| Eco57I | CTGAAG | 1 cut(s) | 508 |
| EcoT14I | CCWWGG | 1 cut(s) | 156 |
| ErhI | CCWWGG | 1 cut(s) | 156 |
| FaeI | CATG | 3 cut(s) | 83, 433, 470 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 11, 43 |
| FaqI | GGGAC | 3 cut(s) | 100, 322, 488 |
| FatI | CATG | 3 cut(s) | 79, 429, 466 |
| FauI | CCCGC | 1 cut(s) | 746 |
| FbaI | TGATCA | 1 cut(s) | 76 |
| Fnu4HI | GCNGC | 2 cut(s) | 67, 520 |
| FokI | GGATG | 3 cut(s) | 173, 305, 343 |
| Fsp4HI | GCNGC | 2 cut(s) | 67, 520 |
| FspBI | CTAG | 2 cut(s) | 255, 299 |
| GluI | GCNGC | 2 cut(s) | 67, 520 |
| GsuI | CTGGAG | 1 cut(s) | 594 |
| HaeIII | GGCC | 3 cut(s) | 69, 186, 297 |
| HapII | CCGG | 1 cut(s) | 248 |
| HgaI | GACGC | 1 cut(s) | 207 |
| Hin1II | CATG | 3 cut(s) | 83, 433, 470 |
| HinfI | GANTC | 1 cut(s) | 548 |
| HpaII | CCGG | 1 cut(s) | 248 |
| HphI | GGTGA | 1 cut(s) | 250 |
| Hpy166II | GTNNAC | 1 cut(s) | 212 |
| Hpy188I | TCNGA | 2 cut(s) | 527, 773 |
| Hpy188III | TCNNGA | 2 cut(s) | 545, 737 |
| Hpy8I | GTNNAC | 1 cut(s) | 212 |
| HpyAV | CCTTC | 2 cut(s) | 235, 650 |
| HpyCH4III | ACNGT | 1 cut(s) | 118 |
| HpyCH4IV | ACGT | 1 cut(s) | 367 |
| HpyCH4V | TGCA | 1 cut(s) | 466 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 251 |
| HpyF3I | CTNAG | 2 cut(s) | 14, 123 |
| HpySE526I | ACGT | 1 cut(s) | 367 |
| Hsp92II | CATG | 3 cut(s) | 83, 433, 470 |
| Ksp22I | TGATCA | 1 cut(s) | 76 |
| Kzo9I | GATC | 4 cut(s) | 76, 415, 475, 739 |
| LmnI | GCTCC | 1 cut(s) | 688 |
| Lsp1109I | GCAGC | 1 cut(s) | 506 |
| MaeI | CTAG | 2 cut(s) | 255, 299 |
| MaeII | ACGT | 1 cut(s) | 367 |
| MaeIII | GTNAC | 1 cut(s) | 118 |
| MalI | GATC | 4 cut(s) | 78, 417, 477, 741 |
| MboI | GATC | 4 cut(s) | 76, 415, 475, 739 |
| MboII | GAAGA | 2 cut(s) | 52, 410 |
| MflI | RGATCY | 1 cut(s) | 739 |
| MlsI | TGGCCA | 1 cut(s) | 186 |
| MluCI | AATT | 3 cut(s) | 91, 105, 507 |
| MluNI | TGGCCA | 1 cut(s) | 186 |
| MmeI | TCCRAC | 2 cut(s) | 350, 363 |
| MnlI | CCTC | 9 cut(s) | 57, 103, 118, 138, 244, 277, 316, 433, 569 |
| Mox20I | TGGCCA | 1 cut(s) | 186 |
| MscI | TGGCCA | 1 cut(s) | 186 |
| MseI | TTAA | 1 cut(s) | 585 |
| Msp20I | TGGCCA | 1 cut(s) | 186 |
| MspA1I | CMGCKG | 1 cut(s) | 13 |
| MspI | CCGG | 1 cut(s) | 248 |
| MvnI | CGCG | 1 cut(s) | 380 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 251 |
| NdeII | GATC | 4 cut(s) | 76, 415, 475, 739 |
| NlaIII | CATG | 3 cut(s) | 83, 433, 470 |
| NlaIV | GGNNCC | 3 cut(s) | 246, 648, 741 |
| NmuCI | GTSAC | 1 cut(s) | 118 |
| PfeI | GAWTC | 1 cut(s) | 548 |
| PkrI | GCNGC | 2 cut(s) | 68, 521 |
| Psp1406I | AACGTT | 1 cut(s) | 367 |
| PspN4I | GGNNCC | 3 cut(s) | 246, 648, 741 |
| PsuI | RGATCY | 1 cut(s) | 739 |
| PvuII | CAGCTG | 1 cut(s) | 13 |
| RsaI | GTAC | 2 cut(s) | 115, 279 |
| RsaNI | GTAC | 2 cut(s) | 114, 278 |
| SaqAI | TTAA | 1 cut(s) | 585 |
| SatI | GCNGC | 2 cut(s) | 67, 520 |
| Sau3AI | GATC | 4 cut(s) | 76, 415, 475, 739 |
| Sse9I | AATT | 3 cut(s) | 91, 105, 507 |
| SsiI | CCGC | 2 cut(s) | 66, 753 |
| SspI | AATATT | 1 cut(s) | 583 |
| SspMI | CTAG | 2 cut(s) | 255, 299 |
| StyI | CCWWGG | 1 cut(s) | 156 |
| TaaI | ACNGT | 1 cut(s) | 118 |
| TaiI | ACGT | 1 cut(s) | 370 |
| TasI | AATT | 3 cut(s) | 91, 105, 507 |
| TauI | GCSGC | 1 cut(s) | 69 |
| TfiI | GAWTC | 1 cut(s) | 548 |
| Tru1I | TTAA | 1 cut(s) | 585 |
| Tru9I | TTAA | 1 cut(s) | 585 |
| TscAI | CASTG | 1 cut(s) | 127 |
| TseFI | GTSAC | 1 cut(s) | 118 |
| TseI | GCWGC | 1 cut(s) | 519 |
| Tsp45I | GTSAC | 1 cut(s) | 118 |
| TspDTI | ATGAA | 2 cut(s) | 347, 483 |
| TspRI | CASTG | 1 cut(s) | 127 |
| XspI | CTAG | 2 cut(s) | 255, 299 |