Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 292 |
| AciI | CCGC | 3 cut(s) | 292, 593, 1000 |
| AclWI | GGATC | 6 cut(s) | 137, 398, 409, 524, 537, 623 |
| AcoI | YGGCCR | 1 cut(s) | 700 |
| AcsI | RAATTY | 1 cut(s) | 623 |
| AfaI | GTAC | 1 cut(s) | 815 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 392, 619, 1346 |
| AgsI | TTSAA | 6 cut(s) | 28, 649, 889, 1132, 1309, 1320 |
| AjiI | CACGTC | 1 cut(s) | 1268 |
| AjnI | CCWGG | 3 cut(s) | 105, 429, 729 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 20, 52 |
| AluBI | AGCT | 3 cut(s) | 823, 1105, 1295 |
| AluI | AGCT | 3 cut(s) | 823, 1105, 1295 |
| Alw21I | GWGCWC | 1 cut(s) | 1418 |
| Alw26I | GTCTC | 2 cut(s) | 936, 950 |
| AlwI | GGATC | 6 cut(s) | 137, 398, 409, 524, 537, 623 |
| Ama87I | CYCGRG | 1 cut(s) | 850 |
| AoxI | GGCC | 3 cut(s) | 610, 700, 1107 |
| ApeKI | GCWGC | 1 cut(s) | 823 |
| ApoI | RAATTY | 1 cut(s) | 623 |
| AseI | ATTAAT | 2 cut(s) | 723, 1040 |
| AspLEI | GCGC | 1 cut(s) | 1005 |
| AspS9I | GGNCC | 1 cut(s) | 187 |
| AsuC2I | CCSGG | 2 cut(s) | 408, 1341 |
| AsuHPI | GGTGA | 3 cut(s) | 419, 959, 1242 |
| AsuNHI | GCTAGC | 1 cut(s) | 1295 |
| AvaI | CYCGRG | 1 cut(s) | 850 |
| AvaII | GGWCC | 1 cut(s) | 187 |
| AxyI | CCTNAGG | 1 cut(s) | 566 |
| BaeGI | GKGCMC | 1 cut(s) | 1140 |
| BalI | TGGCCA | 1 cut(s) | 702 |
| BamHI | GGATCC | 1 cut(s) | 529 |
| BbsI | GAAGAC | 1 cut(s) | 785 |
| Bbv12I | GWGCWC | 1 cut(s) | 1418 |
| BbvI | GCAGC | 1 cut(s) | 810 |
| BccI | CCATC | 7 cut(s) | 311, 386, 542, 737, 768, 1148, 1430 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1348, 1382 |
| BciT130I | CCWGG | 3 cut(s) | 107, 431, 731 |
| BcnI | CCSGG | 2 cut(s) | 408, 1341 |
| BcoDI | GTCTC | 2 cut(s) | 936, 950 |
| BfaI | CTAG | 5 cut(s) | 122, 176, 332, 1176, 1296 |
| BfmI | CTRYAG | 1 cut(s) | 387 |
| BglII | AGATCT | 1 cut(s) | 240 |
| BisI | GCNGC | 2 cut(s) | 824, 1001 |
| BlsI | GCNGC | 2 cut(s) | 825, 1002 |
| Bme1390I | CCNGG | 5 cut(s) | 107, 408, 431, 731, 1341 |
| Bme18I | GGWCC | 1 cut(s) | 187 |
| BmeT110I | CYCGRG | 1 cut(s) | 850 |
| BmgBI | CACGTC | 1 cut(s) | 1268 |
| BmgT120I | GGNCC | 1 cut(s) | 187 |
| BmiI | GGNNCC | 5 cut(s) | 384, 531, 597, 879, 1117 |
| BmrFI | CCNGG | 5 cut(s) | 107, 408, 431, 731, 1341 |
| BmsI | GCATC | 1 cut(s) | 1174 |
| BmtI | GCTAGC | 1 cut(s) | 1299 |
| BpiI | GAAGAC | 1 cut(s) | 785 |
| BpuMI | CCSGG | 2 cut(s) | 408, 1341 |
| Bsa29I | ATCGAT | 1 cut(s) | 402 |
| BsaBI | GATNNNNATC | 2 cut(s) | 117, 321 |
| BsaJI | CCNNGG | 3 cut(s) | 350, 407, 1221 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1076, 1106 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 392, 619, 1346 |
| Bse1I | ACTGG | 2 cut(s) | 964, 1014 |
| Bse21I | CCTNAGG | 1 cut(s) | 566 |
| Bse3DI | GCAATG | 1 cut(s) | 1447 |
| Bse8I | GATNNNNATC | 2 cut(s) | 117, 321 |
| BseBI | CCWGG | 3 cut(s) | 107, 431, 731 |
| BseCI | ATCGAT | 1 cut(s) | 402 |
| BseDI | CCNNGG | 3 cut(s) | 350, 407, 1221 |
| BseGI | GGATG | 4 cut(s) | 115, 322, 1189, 1441 |
| BseJI | GATNNNNATC | 2 cut(s) | 117, 321 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 392, 619, 1346 |
| BseMI | GCAATG | 1 cut(s) | 1447 |
| BseMII | CTCAG | 4 cut(s) | 563, 580, 605, 656 |
| BseNI | ACTGG | 2 cut(s) | 964, 1014 |
| BseRI | GAGGAG | 2 cut(s) | 272, 1097 |
| BseSI | GKGCMC | 1 cut(s) | 1140 |
| BseXI | GCAGC | 1 cut(s) | 810 |
| BshFI | GGCC | 3 cut(s) | 612, 702, 1109 |
| BshVI | ATCGAT | 1 cut(s) | 402 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1418 |
| BsiHKCI | CYCGRG | 1 cut(s) | 850 |
| BsiSI | CCGG | 2 cut(s) | 407, 1340 |
| BslFI | GGGAC | 1 cut(s) | 1278 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 392, 619, 1346 |
| BsmAI | GTCTC | 2 cut(s) | 936, 950 |
| BsmBI | CGTCTC | 1 cut(s) | 936 |
| BsmFI | GGGAC | 1 cut(s) | 1278 |
| BsmI | GAATGC | 1 cut(s) | 333 |
| BsnI | GGCC | 3 cut(s) | 612, 702, 1109 |
| BsoBI | CYCGRG | 1 cut(s) | 850 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1140, 1418 |
| Bsp19I | CCATGG | 1 cut(s) | 350 |
| BspACI | CCGC | 3 cut(s) | 292, 593, 1000 |
| BspANI | GGCC | 3 cut(s) | 612, 702, 1109 |
| BspCNI | CTCAG | 4 cut(s) | 564, 579, 606, 655 |
| BspDI | ATCGAT | 1 cut(s) | 402 |
| BspLI | GGNNCC | 5 cut(s) | 384, 531, 597, 879, 1117 |
| BspOI | GCTAGC | 1 cut(s) | 1299 |
| BspPI | GGATC | 6 cut(s) | 137, 398, 409, 524, 537, 623 |
| BspQI | GCTCTTC | 1 cut(s) | 1387 |
| BsrBI | CCGCTC | 1 cut(s) | 292 |
| BsrDI | GCAATG | 1 cut(s) | 1447 |
| BsrI | ACTGG | 2 cut(s) | 964, 1014 |
| BssECI | CCNNGG | 3 cut(s) | 350, 407, 1221 |
| BssT1I | CCWWGG | 2 cut(s) | 350, 1221 |
| Bst2UI | CCWGG | 3 cut(s) | 107, 431, 731 |
| Bst4CI | ACNGT | 4 cut(s) | 136, 538, 947, 1422 |
| Bst6I | CTCTTC | 2 cut(s) | 912, 1387 |
| BstC8I | GCNNGC | 3 cut(s) | 1107, 1297, 1332 |
| BstDEI | CTNAG | 5 cut(s) | 286, 566, 572, 614, 642 |
| BstDSI | CCRYGG | 1 cut(s) | 350 |
| BstF5I | GGATG | 4 cut(s) | 115, 322, 1189, 1441 |
| BstHHI | GCGC | 1 cut(s) | 1005 |
| BstMAI | GTCTC | 2 cut(s) | 936, 950 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 337 |
| BstNI | CCWGG | 3 cut(s) | 107, 431, 731 |
| BstSCI | CCNGG | 5 cut(s) | 105, 406, 429, 729, 1339 |
| BstSFI | CTRYAG | 1 cut(s) | 387 |
| BstSLI | GKGCMC | 1 cut(s) | 1140 |
| BstV1I | GCAGC | 1 cut(s) | 810 |
| BstV2I | GAAGAC | 1 cut(s) | 785 |
| BstX2I | RGATCY | 2 cut(s) | 240, 529 |
| BstYI | RGATCY | 2 cut(s) | 240, 529 |
| Bsu15I | ATCGAT | 1 cut(s) | 402 |
| Bsu36I | CCTNAGG | 1 cut(s) | 566 |
| BsuRI | GGCC | 3 cut(s) | 612, 702, 1109 |
| BsuTUI | ATCGAT | 1 cut(s) | 402 |
| BtgI | CCRYGG | 1 cut(s) | 350 |
| BtrI | CACGTC | 1 cut(s) | 1268 |
| BtsCI | GGATG | 4 cut(s) | 115, 322, 1189, 1441 |
| Cac8I | GCNNGC | 3 cut(s) | 1107, 1297, 1332 |
| CfoI | GCGC | 1 cut(s) | 1005 |
| Cfr13I | GGNCC | 1 cut(s) | 187 |
| ClaI | ATCGAT | 1 cut(s) | 402 |
| CseI | GACGC | 1 cut(s) | 647 |
| Csp6I | GTAC | 1 cut(s) | 814 |
| CviAII | CATG | 5 cut(s) | 64, 351, 704, 713, 1449 |
| CviQI | GTAC | 1 cut(s) | 814 |
| DdeI | CTNAG | 5 cut(s) | 286, 566, 572, 614, 642 |
| EaeI | YGGCCR | 1 cut(s) | 700 |
| Eam1104I | CTCTTC | 2 cut(s) | 912, 1387 |
| EarI | CTCTTC | 2 cut(s) | 912, 1387 |
| Eco130I | CCWWGG | 2 cut(s) | 350, 1221 |
| Eco147I | AGGCCT | 1 cut(s) | 612 |
| Eco47I | GGWCC | 1 cut(s) | 187 |
| Eco81I | CCTNAGG | 1 cut(s) | 566 |
| Eco88I | CYCGRG | 1 cut(s) | 850 |
| EcoO109I | RGGNCCY | 1 cut(s) | 187 |
| EcoRII | CCWGG | 3 cut(s) | 105, 429, 729 |
| EcoT14I | CCWWGG | 2 cut(s) | 350, 1221 |
| ErhI | CCWWGG | 2 cut(s) | 350, 1221 |
| Esp3I | CGTCTC | 1 cut(s) | 936 |
| FaeI | CATG | 5 cut(s) | 67, 354, 707, 716, 1452 |
| FaqI | GGGAC | 1 cut(s) | 1278 |
| FatI | CATG | 5 cut(s) | 63, 350, 703, 712, 1448 |
| FauNDI | CATATG | 1 cut(s) | 838 |
| Fnu4HI | GCNGC | 2 cut(s) | 824, 1001 |
| FokI | GGATG | 4 cut(s) | 122, 329, 1196, 1448 |
| Fsp4HI | GCNGC | 2 cut(s) | 824, 1001 |
| FspBI | CTAG | 5 cut(s) | 122, 176, 332, 1176, 1296 |
| GlaI | GCGC | 1 cut(s) | 1004 |
| GluI | GCNGC | 2 cut(s) | 824, 1001 |
| HaeIII | GGCC | 3 cut(s) | 612, 702, 1109 |
| HapII | CCGG | 2 cut(s) | 407, 1340 |
| HgaI | GACGC | 1 cut(s) | 647 |
| HhaI | GCGC | 1 cut(s) | 1005 |
| Hin1II | CATG | 5 cut(s) | 67, 354, 707, 716, 1452 |
| Hin6I | GCGC | 1 cut(s) | 1003 |
| HinP1I | GCGC | 1 cut(s) | 1003 |
| HincII | GTYRAC | 4 cut(s) | 249, 585, 846, 924 |
| HindII | GTYRAC | 4 cut(s) | 249, 585, 846, 924 |
| HinfI | GANTC | 9 cut(s) | 168, 215, 346, 576, 925, 1049, 1209, 1247, 1316 |
| HpaI | GTTAAC | 2 cut(s) | 585, 846 |
| HpaII | CCGG | 2 cut(s) | 407, 1340 |
| HphI | GGTGA | 3 cut(s) | 419, 959, 1242 |
| Hpy166II | GTNNAC | 5 cut(s) | 249, 585, 799, 846, 924 |
| Hpy188I | TCNGA | 3 cut(s) | 545, 1054, 1413 |
| Hpy188III | TCNNGA | 2 cut(s) | 122, 881 |
| Hpy8I | GTNNAC | 5 cut(s) | 249, 585, 799, 846, 924 |
| HpyCH4III | ACNGT | 4 cut(s) | 136, 538, 947, 1422 |
| HpyCH4IV | ACGT | 2 cut(s) | 782, 1267 |
| HpyCH4V | TGCA | 5 cut(s) | 161, 340, 826, 987, 1445 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 337 |
| HpyF3I | CTNAG | 5 cut(s) | 286, 566, 572, 614, 642 |
| HpySE526I | ACGT | 2 cut(s) | 782, 1267 |
| Hsp92II | CATG | 5 cut(s) | 67, 354, 707, 716, 1452 |
| HspAI | GCGC | 1 cut(s) | 1003 |
| KspAI | GTTAAC | 2 cut(s) | 585, 846 |
| LguI | GCTCTTC | 1 cut(s) | 1387 |
| LmnI | GCTCC | 2 cut(s) | 883, 910 |
| Lsp1109I | GCAGC | 1 cut(s) | 810 |
| LweI | GCATC | 1 cut(s) | 1174 |
| MaeI | CTAG | 5 cut(s) | 122, 176, 332, 1176, 1296 |
| MaeII | ACGT | 2 cut(s) | 782, 1267 |
| MaeIII | GTNAC | 3 cut(s) | 751, 1144, 1248 |
| MbiI | CCGCTC | 1 cut(s) | 292 |
| MboII | GAAGA | 6 cut(s) | 211, 790, 929, 1270, 1374, 1441 |
| MfeI | CAATTG | 1 cut(s) | 929 |
| MflI | RGATCY | 2 cut(s) | 240, 529 |
| MhlI | GDGCHC | 2 cut(s) | 1140, 1418 |
| MlsI | TGGCCA | 1 cut(s) | 702 |
| MluCI | AATT | 8 cut(s) | 364, 495, 623, 724, 738, 884, 929, 988 |
| MluNI | TGGCCA | 1 cut(s) | 702 |
| MlyI | GAGTC | 4 cut(s) | 224, 355, 919, 1256 |
| MmeI | TCCRAC | 3 cut(s) | 58, 170, 557 |
| Mox20I | TGGCCA | 1 cut(s) | 702 |
| MscI | TGGCCA | 1 cut(s) | 702 |
| MseI | TTAA | 8 cut(s) | 207, 309, 584, 723, 845, 995, 1040, 1373 |
| Msp20I | TGGCCA | 1 cut(s) | 702 |
| MspA1I | CMGCKG | 1 cut(s) | 823 |
| MspI | CCGG | 2 cut(s) | 407, 1340 |
| MspR9I | CCNGG | 5 cut(s) | 107, 408, 431, 731, 1341 |
| MunI | CAATTG | 1 cut(s) | 929 |
| Mva1269I | GAATGC | 1 cut(s) | 333 |
| MvaI | CCWGG | 3 cut(s) | 107, 431, 731 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 337 |
| NciI | CCSGG | 2 cut(s) | 408, 1341 |
| NcoI | CCATGG | 1 cut(s) | 350 |
| NdeI | CATATG | 1 cut(s) | 838 |
| NheI | GCTAGC | 1 cut(s) | 1295 |
| NlaIII | CATG | 5 cut(s) | 67, 354, 707, 716, 1452 |
| NlaIV | GGNNCC | 5 cut(s) | 384, 531, 597, 879, 1117 |
| NmuCI | GTSAC | 1 cut(s) | 1248 |
| PceI | AGGCCT | 1 cut(s) | 612 |
| PciSI | GCTCTTC | 1 cut(s) | 1387 |
| PctI | GAATGC | 1 cut(s) | 333 |
| PfeI | GAWTC | 5 cut(s) | 168, 576, 1049, 1209, 1316 |
| PflFI | GACNNNGTC | 1 cut(s) | 784 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 2 cut(s) | 825, 1002 |
| PleI | GAGTC | 4 cut(s) | 223, 354, 919, 1255 |
| PpsI | GAGTC | 4 cut(s) | 223, 354, 919, 1255 |
| PpuMI | RGGWCCY | 1 cut(s) | 187 |
| PshBI | ATTAAT | 2 cut(s) | 723, 1040 |
| Psp5II | RGGWCCY | 1 cut(s) | 187 |
| Psp6I | CCWGG | 3 cut(s) | 105, 429, 729 |
| PspGI | CCWGG | 3 cut(s) | 105, 429, 729 |
| PspN4I | GGNNCC | 5 cut(s) | 384, 531, 597, 879, 1117 |
| PspPI | GGNCC | 1 cut(s) | 187 |
| PspPPI | RGGWCCY | 1 cut(s) | 187 |
| PsuI | RGATCY | 2 cut(s) | 240, 529 |
| PsyI | GACNNNGTC | 1 cut(s) | 784 |
| PvuII | CAGCTG | 1 cut(s) | 823 |
| RsaI | GTAC | 1 cut(s) | 815 |
| RsaNI | GTAC | 1 cut(s) | 814 |
| SapI | GCTCTTC | 1 cut(s) | 1387 |
| SaqAI | TTAA | 8 cut(s) | 207, 309, 584, 723, 845, 995, 1040, 1373 |
| SatI | GCNGC | 2 cut(s) | 824, 1001 |
| Sau96I | GGNCC | 1 cut(s) | 187 |
| SchI | GAGTC | 4 cut(s) | 224, 355, 919, 1256 |
| ScrFI | CCNGG | 5 cut(s) | 107, 408, 431, 731, 1341 |
| SduI | GDGCHC | 2 cut(s) | 1140, 1418 |
| SfaNI | GCATC | 1 cut(s) | 1174 |
| SfcI | CTRYAG | 1 cut(s) | 387 |
| SinI | GGWCC | 1 cut(s) | 187 |
| Sse9I | AATT | 8 cut(s) | 364, 495, 623, 724, 738, 884, 929, 988 |
| SseBI | AGGCCT | 1 cut(s) | 612 |
| SsiI | CCGC | 3 cut(s) | 292, 593, 1000 |
| SspI | AATATT | 1 cut(s) | 1038 |
| SspMI | CTAG | 5 cut(s) | 122, 176, 332, 1176, 1296 |
| StuI | AGGCCT | 1 cut(s) | 612 |
| StyD4I | CCNGG | 5 cut(s) | 105, 406, 429, 729, 1339 |
| StyI | CCWWGG | 2 cut(s) | 350, 1221 |
| TaaI | ACNGT | 4 cut(s) | 136, 538, 947, 1422 |
| TaiI | ACGT | 2 cut(s) | 785, 1270 |
| TaqI | TCGA | 6 cut(s) | 325, 402, 579, 663, 788, 978 |
| TasI | AATT | 8 cut(s) | 364, 495, 623, 724, 738, 884, 929, 988 |
| TatI | WGTACW | 1 cut(s) | 813 |
| TauI | GCSGC | 1 cut(s) | 1003 |
| TfiI | GAWTC | 5 cut(s) | 168, 576, 1049, 1209, 1316 |
| Tru1I | TTAA | 8 cut(s) | 207, 309, 584, 723, 845, 995, 1040, 1373 |
| Tru9I | TTAA | 8 cut(s) | 207, 309, 584, 723, 845, 995, 1040, 1373 |
| TseFI | GTSAC | 1 cut(s) | 1248 |
| TseI | GCWGC | 1 cut(s) | 823 |
| Tsp45I | GTSAC | 1 cut(s) | 1248 |
| TspDTI | ATGAA | 2 cut(s) | 684, 1206 |
| TspGWI | ACGGA | 4 cut(s) | 329, 542, 770, 1366 |
| Tth111I | GACNNNGTC | 1 cut(s) | 784 |
| VpaK11BI | GGWCC | 1 cut(s) | 187 |
| VspI | ATTAAT | 2 cut(s) | 723, 1040 |
| XapI | RAATTY | 1 cut(s) | 623 |
| XbaI | TCTAGA | 1 cut(s) | 121 |
| XspI | CTAG | 5 cut(s) | 122, 176, 332, 1176, 1296 |