Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 166, 1164 |
| AccI | GTMKAC | 1 cut(s) | 958 |
| AccII | CGCG | 2 cut(s) | 586, 1061 |
| AciI | CCGC | 7 cut(s) | 166, 584, 586, 651, 859, 1034, 1164 |
| AclI | AACGTT | 1 cut(s) | 1120 |
| AcsI | RAATTY | 1 cut(s) | 260 |
| AcuI | CTGAAG | 1 cut(s) | 336 |
| AfaI | GTAC | 4 cut(s) | 60, 1089, 1141, 1267 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 392, 1262, 1295, 1415, 1416 |
| AflIII | ACRYGT | 1 cut(s) | 1369 |
| AgeI | ACCGGT | 1 cut(s) | 1090 |
| AgsI | TTSAA | 4 cut(s) | 310, 617, 935, 1084 |
| AhlI | ACTAGT | 1 cut(s) | 1097 |
| AjiI | CACGTC | 1 cut(s) | 1217 |
| AluBI | AGCT | 2 cut(s) | 101, 703 |
| AluI | AGCT | 2 cut(s) | 101, 703 |
| Alw26I | GTCTC | 1 cut(s) | 647 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1010 |
| Ama87I | CYCGRG | 1 cut(s) | 544 |
| AoxI | GGCC | 1 cut(s) | 769 |
| ApeKI | GCWGC | 1 cut(s) | 337 |
| ApoI | RAATTY | 1 cut(s) | 260 |
| AsiGI | ACCGGT | 1 cut(s) | 1090 |
| AspLEI | GCGC | 1 cut(s) | 1403 |
| AspS9I | GGNCC | 2 cut(s) | 769, 819 |
| AsuC2I | CCSGG | 1 cut(s) | 408 |
| AsuHPI | GGTGA | 1 cut(s) | 619 |
| AvaI | CYCGRG | 1 cut(s) | 544 |
| AvaII | GGWCC | 1 cut(s) | 819 |
| AxyI | CCTNAGG | 1 cut(s) | 1257 |
| BamHI | GGATCC | 3 cut(s) | 403, 580, 1433 |
| BanII | GRGCYC | 1 cut(s) | 832 |
| BauI | CACGAG | 1 cut(s) | 176 |
| BbsI | GAAGAC | 3 cut(s) | 292, 327, 737 |
| BbvI | GCAGC | 1 cut(s) | 324 |
| BccI | CCATC | 4 cut(s) | 386, 394, 494, 1378 |
| BceAI | ACGGC | 1 cut(s) | 939 |
| BcnI | CCSGG | 1 cut(s) | 408 |
| BcoDI | GTCTC | 1 cut(s) | 647 |
| BcuI | ACTAGT | 1 cut(s) | 1097 |
| BfaI | CTAG | 4 cut(s) | 98, 330, 840, 1098 |
| BfmI | CTRYAG | 1 cut(s) | 387 |
| BglII | AGATCT | 1 cut(s) | 240 |
| BisI | GCNGC | 1 cut(s) | 338 |
| BlpI | GCTNAGC | 1 cut(s) | 162 |
| BlsI | GCNGC | 1 cut(s) | 339 |
| Bme1390I | CCNGG | 1 cut(s) | 408 |
| Bme18I | GGWCC | 1 cut(s) | 819 |
| BmeT110I | CYCGRG | 1 cut(s) | 544 |
| BmgBI | CACGTC | 1 cut(s) | 1217 |
| BmgT120I | GGNCC | 2 cut(s) | 769, 819 |
| BmiI | GGNNCC | 4 cut(s) | 384, 405, 582, 1435 |
| BmrFI | CCNGG | 1 cut(s) | 408 |
| BmsI | GCATC | 4 cut(s) | 237, 1010, 1021, 1431 |
| BpiI | GAAGAC | 3 cut(s) | 292, 327, 737 |
| BpmI | CTGGAG | 2 cut(s) | 143, 870 |
| Bpu10I | CCTNAGC | 1 cut(s) | 834 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 162 |
| BpuEI | CTTGAG | 1 cut(s) | 221 |
| BpuMI | CCSGG | 1 cut(s) | 408 |
| BsaBI | GATNNNNATC | 1 cut(s) | 117 |
| BsaJI | CCNNGG | 5 cut(s) | 252, 350, 407, 584, 815 |
| BsaWI | WCCGGW | 2 cut(s) | 1090, 1288 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 42, 72, 496, 526 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 392, 1262, 1295, 1415, 1416 |
| Bse118I | RCCGGY | 1 cut(s) | 1090 |
| Bse1I | ACTGG | 5 cut(s) | 378, 772, 853, 1015, 1147 |
| Bse21I | CCTNAGG | 1 cut(s) | 1257 |
| Bse3DI | GCAATG | 1 cut(s) | 1070 |
| Bse8I | GATNNNNATC | 1 cut(s) | 117 |
| BseDI | CCNNGG | 5 cut(s) | 252, 350, 407, 584, 815 |
| BseGI | GGATG | 9 cut(s) | 85, 115, 402, 505, 528, 751, 930, 1036, 1285 |
| BseJI | GATNNNNATC | 1 cut(s) | 117 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 392, 1262, 1295, 1415, 1416 |
| BseMI | GCAATG | 1 cut(s) | 1070 |
| BseMII | CTCAG | 4 cut(s) | 153, 825, 1202, 1283 |
| BseNI | ACTGG | 5 cut(s) | 378, 772, 853, 1015, 1147 |
| BseRI | GAGGAG | 1 cut(s) | 83 |
| BseXI | GCAGC | 1 cut(s) | 324 |
| BsgI | GTGCAG | 2 cut(s) | 44, 1413 |
| Bsh1236I | CGCG | 2 cut(s) | 586, 1061 |
| BshFI | GGCC | 1 cut(s) | 771 |
| BshTI | ACCGGT | 1 cut(s) | 1090 |
| BsiHKCI | CYCGRG | 1 cut(s) | 544 |
| BsiSI | CCGG | 3 cut(s) | 407, 1091, 1289 |
| BslFI | GGGAC | 3 cut(s) | 602, 1392, 1432 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 392, 1262, 1295, 1415, 1416 |
| BsmAI | GTCTC | 1 cut(s) | 647 |
| BsmFI | GGGAC | 3 cut(s) | 602, 1392, 1432 |
| BsmI | GAATGC | 1 cut(s) | 576 |
| BsnI | GGCC | 1 cut(s) | 771 |
| BsoBI | CYCGRG | 1 cut(s) | 544 |
| Bsp1286I | GDGCHC | 1 cut(s) | 832 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 162 |
| BspACI | CCGC | 7 cut(s) | 166, 584, 586, 651, 859, 1034, 1164 |
| BspANI | GGCC | 1 cut(s) | 771 |
| BspCNI | CTCAG | 4 cut(s) | 154, 826, 1201, 1282 |
| BspFNI | CGCG | 2 cut(s) | 586, 1061 |
| BspLI | GGNNCC | 4 cut(s) | 384, 405, 582, 1435 |
| BsrBI | CCGCTC | 2 cut(s) | 166, 1164 |
| BsrDI | GCAATG | 1 cut(s) | 1070 |
| BsrFI | RCCGGY | 1 cut(s) | 1090 |
| BsrI | ACTGG | 5 cut(s) | 378, 772, 853, 1015, 1147 |
| BssAI | RCCGGY | 1 cut(s) | 1090 |
| BssECI | CCNNGG | 5 cut(s) | 252, 350, 407, 584, 815 |
| BssSI | CACGAG | 1 cut(s) | 176 |
| BssT1I | CCWWGG | 2 cut(s) | 252, 350 |
| Bst2BI | CACGAG | 1 cut(s) | 176 |
| Bst4CI | ACNGT | 3 cut(s) | 136, 690, 816 |
| BstC8I | GCNNGC | 1 cut(s) | 1242 |
| BstDEI | CTNAG | 6 cut(s) | 162, 599, 834, 1188, 1257, 1269 |
| BstDSI | CCRYGG | 2 cut(s) | 584, 815 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1260 |
| BstF5I | GGATG | 9 cut(s) | 85, 115, 402, 505, 528, 751, 930, 1036, 1285 |
| BstFNI | CGCG | 2 cut(s) | 586, 1061 |
| BstHHI | GCGC | 1 cut(s) | 1403 |
| BstMAI | GTCTC | 1 cut(s) | 647 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 172, 1400 |
| BstNSI | RCATGY | 3 cut(s) | 1140, 1244, 1373 |
| BstSCI | CCNGG | 1 cut(s) | 406 |
| BstSFI | CTRYAG | 1 cut(s) | 387 |
| BstUI | CGCG | 2 cut(s) | 586, 1061 |
| BstV1I | GCAGC | 1 cut(s) | 324 |
| BstV2I | GAAGAC | 3 cut(s) | 292, 327, 737 |
| BstX2I | RGATCY | 5 cut(s) | 240, 403, 580, 785, 1433 |
| BstYI | RGATCY | 5 cut(s) | 240, 403, 580, 785, 1433 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1257 |
| BsuRI | GGCC | 1 cut(s) | 771 |
| BtgI | CCRYGG | 2 cut(s) | 584, 815 |
| BtrI | CACGTC | 1 cut(s) | 1217 |
| BtsCI | GGATG | 9 cut(s) | 85, 115, 402, 505, 528, 751, 930, 1036, 1285 |
| BtsI | GCAGTG | 2 cut(s) | 1185, 1401 |
| BtsIMutI | CAGTG | 3 cut(s) | 141, 1185, 1401 |
| Cac8I | GCNNGC | 1 cut(s) | 1242 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1010 |
| CfoI | GCGC | 1 cut(s) | 1403 |
| Cfr10I | RCCGGY | 1 cut(s) | 1090 |
| Cfr13I | GGNCC | 2 cut(s) | 769, 819 |
| Cfr42I | CCGCGG | 1 cut(s) | 587 |
| CseI | GACGC | 1 cut(s) | 234 |
| Csp6I | GTAC | 4 cut(s) | 59, 1088, 1140, 1266 |
| CspAI | ACCGGT | 1 cut(s) | 1090 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 797, 832 |
| CviAII | CATG | 7 cut(s) | 665, 706, 823, 1137, 1241, 1326, 1370 |
| CviQI | GTAC | 4 cut(s) | 59, 1088, 1140, 1266 |
| DdeI | CTNAG | 6 cut(s) | 162, 599, 834, 1188, 1257, 1269 |
| DraI | TTTAAA | 1 cut(s) | 474 |
| Eco130I | CCWWGG | 2 cut(s) | 252, 350 |
| Eco24I | GRGCYC | 1 cut(s) | 832 |
| Eco47I | GGWCC | 1 cut(s) | 819 |
| Eco57I | CTGAAG | 1 cut(s) | 336 |
| Eco81I | CCTNAGG | 1 cut(s) | 1257 |
| Eco88I | CYCGRG | 1 cut(s) | 544 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1260 |
| EcoT14I | CCWWGG | 2 cut(s) | 252, 350 |
| EcoT38I | GRGCYC | 1 cut(s) | 832 |
| ErhI | CCWWGG | 2 cut(s) | 252, 350 |
| FaeI | CATG | 7 cut(s) | 668, 709, 826, 1140, 1244, 1329, 1373 |
| FaqI | GGGAC | 3 cut(s) | 602, 1392, 1432 |
| FatI | CATG | 7 cut(s) | 664, 705, 822, 1136, 1240, 1325, 1369 |
| FauI | CCCGC | 2 cut(s) | 579, 852 |
| FblI | GTMKAC | 1 cut(s) | 958 |
| Fnu4HI | GCNGC | 1 cut(s) | 338 |
| FokI | GGATG | 9 cut(s) | 92, 122, 409, 512, 535, 758, 937, 1043, 1272 |
| FriOI | GRGCYC | 1 cut(s) | 832 |
| Fsp4HI | GCNGC | 1 cut(s) | 338 |
| FspBI | CTAG | 4 cut(s) | 98, 330, 840, 1098 |
| GlaI | GCGC | 1 cut(s) | 1402 |
| GluI | GCNGC | 1 cut(s) | 338 |
| GsuI | CTGGAG | 2 cut(s) | 143, 870 |
| HaeIII | GGCC | 1 cut(s) | 771 |
| HapII | CCGG | 3 cut(s) | 407, 1091, 1289 |
| HgaI | GACGC | 1 cut(s) | 234 |
| HhaI | GCGC | 1 cut(s) | 1403 |
| Hin1II | CATG | 7 cut(s) | 668, 709, 826, 1140, 1244, 1329, 1373 |
| Hin6I | GCGC | 1 cut(s) | 1401 |
| HinP1I | GCGC | 1 cut(s) | 1401 |
| HincII | GTYRAC | 3 cut(s) | 208, 249, 959 |
| HindII | GTYRAC | 3 cut(s) | 208, 249, 959 |
| HinfI | GANTC | 4 cut(s) | 215, 547, 1067, 1234 |
| HpaII | CCGG | 3 cut(s) | 407, 1091, 1289 |
| HphI | GGTGA | 1 cut(s) | 619 |
| Hpy166II | GTNNAC | 6 cut(s) | 139, 208, 249, 551, 959, 1057 |
| Hpy188III | TCNNGA | 7 cut(s) | 107, 122, 238, 422, 431, 439, 544 |
| Hpy8I | GTNNAC | 6 cut(s) | 139, 208, 249, 551, 959, 1057 |
| Hpy99I | CGWCG | 3 cut(s) | 96, 215, 960 |
| HpyAV | CCTTC | 7 cut(s) | 178, 196, 316, 689, 717, 736, 1207 |
| HpyCH4III | ACNGT | 3 cut(s) | 136, 690, 816 |
| HpyCH4IV | ACGT | 3 cut(s) | 210, 1120, 1216 |
| HpyCH4V | TGCA | 9 cut(s) | 25, 340, 574, 766, 1001, 1075, 1240, 1244, 1394 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 172, 1400 |
| HpyF3I | CTNAG | 6 cut(s) | 162, 599, 834, 1188, 1257, 1269 |
| HpySE526I | ACGT | 3 cut(s) | 210, 1120, 1216 |
| Hsp92II | CATG | 7 cut(s) | 668, 709, 826, 1140, 1244, 1329, 1373 |
| HspAI | GCGC | 1 cut(s) | 1401 |
| KspI | CCGCGG | 1 cut(s) | 587 |
| LmnI | GCTCC | 5 cut(s) | 862, 970, 1036, 1161, 1334 |
| Lsp1109I | GCAGC | 1 cut(s) | 324 |
| LweI | GCATC | 4 cut(s) | 237, 1010, 1021, 1431 |
| MaeI | CTAG | 4 cut(s) | 98, 330, 840, 1098 |
| MaeII | ACGT | 3 cut(s) | 210, 1120, 1216 |
| MaeIII | GTNAC | 4 cut(s) | 671, 774, 1093, 1100 |
| MbiI | CCGCTC | 2 cut(s) | 166, 1164 |
| MfeI | CAATTG | 1 cut(s) | 676 |
| MflI | RGATCY | 5 cut(s) | 240, 403, 580, 785, 1433 |
| MhlI | GDGCHC | 1 cut(s) | 832 |
| MluCI | AATT | 4 cut(s) | 260, 676, 881, 964 |
| MlyI | GAGTC | 1 cut(s) | 556 |
| MmeI | TCCRAC | 2 cut(s) | 558, 1280 |
| MseI | TTAA | 5 cut(s) | 473, 797, 963, 992, 1293 |
| MspA1I | CMGCKG | 1 cut(s) | 586 |
| MspI | CCGG | 3 cut(s) | 407, 1091, 1289 |
| MspR9I | CCNGG | 1 cut(s) | 408 |
| MunI | CAATTG | 1 cut(s) | 676 |
| Mva1269I | GAATGC | 1 cut(s) | 576 |
| MvnI | CGCG | 2 cut(s) | 586, 1061 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 172, 1400 |
| NciI | CCSGG | 1 cut(s) | 408 |
| NlaIII | CATG | 7 cut(s) | 668, 709, 826, 1140, 1244, 1329, 1373 |
| NlaIV | GGNNCC | 4 cut(s) | 384, 405, 582, 1435 |
| NspI | RCATGY | 3 cut(s) | 1140, 1244, 1373 |
| PaeI | GCATGC | 1 cut(s) | 1244 |
| PaeR7I | CTCGAG | 1 cut(s) | 544 |
| PciI | ACATGT | 1 cut(s) | 1369 |
| PctI | GAATGC | 1 cut(s) | 576 |
| PfeI | GAWTC | 3 cut(s) | 215, 1067, 1234 |
| PinAI | ACCGGT | 1 cut(s) | 1090 |
| PkrI | GCNGC | 1 cut(s) | 339 |
| PleI | GAGTC | 1 cut(s) | 555 |
| PpsI | GAGTC | 1 cut(s) | 555 |
| PscI | ACATGT | 1 cut(s) | 1369 |
| Psp1406I | AACGTT | 1 cut(s) | 1120 |
| PspN4I | GGNNCC | 4 cut(s) | 384, 405, 582, 1435 |
| PspPI | GGNCC | 2 cut(s) | 769, 819 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1010 |
| PsuI | RGATCY | 5 cut(s) | 240, 403, 580, 785, 1433 |
| RsaI | GTAC | 4 cut(s) | 60, 1089, 1141, 1267 |
| RsaNI | GTAC | 4 cut(s) | 59, 1088, 1140, 1266 |
| SacII | CCGCGG | 1 cut(s) | 587 |
| SalI | GTCGAC | 1 cut(s) | 957 |
| SaqAI | TTAA | 5 cut(s) | 473, 797, 963, 992, 1293 |
| SatI | GCNGC | 1 cut(s) | 338 |
| Sau96I | GGNCC | 2 cut(s) | 769, 819 |
| SchI | GAGTC | 1 cut(s) | 556 |
| ScrFI | CCNGG | 1 cut(s) | 408 |
| SduI | GDGCHC | 1 cut(s) | 832 |
| SfaNI | GCATC | 4 cut(s) | 237, 1010, 1021, 1431 |
| SfcI | CTRYAG | 1 cut(s) | 387 |
| Sfr274I | CTCGAG | 1 cut(s) | 544 |
| Sfr303I | CCGCGG | 1 cut(s) | 587 |
| SgrBI | CCGCGG | 1 cut(s) | 587 |
| SinI | GGWCC | 1 cut(s) | 819 |
| SlaI | CTCGAG | 1 cut(s) | 544 |
| SmlI | CTYRAG | 2 cut(s) | 236, 544 |
| SmoI | CTYRAG | 2 cut(s) | 236, 544 |
| SpeI | ACTAGT | 1 cut(s) | 1097 |
| SphI | GCATGC | 1 cut(s) | 1244 |
| Sse9I | AATT | 4 cut(s) | 260, 676, 881, 964 |
| SsiI | CCGC | 7 cut(s) | 166, 584, 586, 651, 859, 1034, 1164 |
| SspMI | CTAG | 4 cut(s) | 98, 330, 840, 1098 |
| StyD4I | CCNGG | 1 cut(s) | 406 |
| StyI | CCWWGG | 2 cut(s) | 252, 350 |
| TaaI | ACNGT | 3 cut(s) | 136, 690, 816 |
| TaiI | ACGT | 3 cut(s) | 213, 1123, 1219 |
| TaqI | TCGA | 7 cut(s) | 213, 266, 545, 740, 892, 947, 958 |
| TasI | AATT | 4 cut(s) | 260, 676, 881, 964 |
| TatI | WGTACW | 1 cut(s) | 1139 |
| TfiI | GAWTC | 3 cut(s) | 215, 1067, 1234 |
| Tru1I | TTAA | 5 cut(s) | 473, 797, 963, 992, 1293 |
| Tru9I | TTAA | 5 cut(s) | 473, 797, 963, 992, 1293 |
| TscAI | CASTG | 3 cut(s) | 141, 1185, 1401 |
| TseI | GCWGC | 1 cut(s) | 337 |
| TspDTI | ATGAA | 4 cut(s) | 636, 995, 1059, 1220 |
| TspGWI | ACGGA | 2 cut(s) | 5, 535 |
| TspRI | CASTG | 3 cut(s) | 141, 1185, 1401 |
| VpaK11BI | GGWCC | 1 cut(s) | 819 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1260 |
| XapI | RAATTY | 1 cut(s) | 260 |
| XceI | RCATGY | 3 cut(s) | 1140, 1244, 1373 |
| XhoI | CTCGAG | 1 cut(s) | 544 |
| XmiI | GTMKAC | 1 cut(s) | 958 |
| XspI | CTAG | 4 cut(s) | 98, 330, 840, 1098 |