Rw7G032200

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000022
Physical Location & Seq
Reverse (-)
46555500 .. 46562646
7147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G032200.1

Sequence Viewer

Length: 2250 bp
ATGGAAGAAGCCCTAGTTGATCTGACGAAAAGGTTGGCCATTGAGGATGTGGAGGATCTAAATGTTCTTCAGATTGAAGATCCTAAAGAGGTTATCGCTCAAAAGTTCTGGCTTGTAGGTAAGCTTTTGACGAACAAACCTTATTGCTTTGAAGCGCTGAGGAGTACTATGAAGCGGCTATGGGCTTTGAAAGAAGAGGTGACTATATTCCAATGGGAGGAGGCTGACCGGATACTCTTCTCCTTCGGTTCTGATGCAGATCGCGGAAAGGTATTGAAAGGAAGCCCTTGGACTTTTGATCGTGCACTACTTCTCCTCACTGCTTCAAATGGAACTGTTGATCCGAAATTGAGTCCACTAGAAGATCAAGCTTTCTGGATACGGGTAAGAGACATCAAACCTGCTTTCATAACTCCCAGATTGGAGGAACGCATTGGTCGTCAGTTGGGAATTTTCTATCTGGTGGGCGGTGGTTACGGAGAAGATTGTAGTGGGAGGTTTCTTCGCATTCGGGTTGGGCTGTCAGTCTCAAAACCCCTACAACGATGGATCAAGATTTCGTTGGCCACTGGATTATTACCAGAGAAATTCAGTTTGGAGTACGAACACTTGCCTTATTTCTGTCTCTTTTGTGGCAGATTAGACCATGTTAGCTCGGGTTGTGAGTTACATAAGGAGGGTCTAATCACAGACGAAAGATACGGTCGTTGGAAGACGATGTCAAGGGGAGTATTTTCAATTGACTGGGATGGCCAATTGCAAGAGGATGTTTTCTCTAGGACTGTTCGATCTCGGGCTGAGTTTGAAGAGGAAGTTCGAATTGGTACGGCAGAGATGGAGGTAGATGGGGGCGGAGCTAATTTAACGGAGATTCAATTGGCCAAGCGGCGCCGTCGGATGTCTGATGAGGTGGCAACTAATTCATCCCTACAATCAAGCTCTTCTAATTCGCGGGATTCTGACGGTGGAACTATGAGCCAGTGCACTTTTCCTAAAGATGTTGTTGGGTCCTCCTCCTTCCAGGCCCGAGTTTTAAAGTCAGTTGATGTAGTTGGGCCTGCCCCTGAGCCCAGATTATCAAACACGCTGGAAATTTCTCCATCTGGAGACATTAACGCAATCCCTAACTCTATTTTTGGGAAGACTGGAAAACTCGAGAGTAAGCATGGGGGTGACATTCGCTTGGGTTCTGAGGGGAGGTCAGAAGAGGGTGAGAGCAAGAGTAGAGGTGAGAGGAAGACTAGAGGCAAAAGCAATCGAGGTGGGCATAGTGGTGGTCGGAGGGATGGCCATTCAGGCAAGAACTTTGTGGATCCGATTCTGGAAACTGAGGCGGCGAAGGGTGCGCCTGGACCAACAGATGCACTTTCATCTGGGGGTTGTGTCAAAGGTAGTAAGGGGAGAAGAGGTTTTCCAGTGGGTAGGAGTGGGCGTGGGCGCAGGCGCAGCGGCAGCCGATGTGCGGTATCTCCTCCAAGTGATGTTGCTATCCTTGTTTCAGAAATGATAGGTGTTGGTTGGAATGTGAGGGGACTGGGGAACCCGCACACATTCCGAGCCTTAAAGAAGTTTCTTCGGGCAAAAGACCCTGACCTGGTCTTCCTGATGGAGACGAAGAAATCGAAAATGGAAATGGCTGATATTTGTTTCAATTTGGGATTCGCAGGATGTAGTACGGTTGGAAAGGTGGGTAGGAGTAGTGGCGGGCTTGCATTGTGTTGGAAGAGTAATCTGGTTGTCAGGCCTTTGGGATCTTCCATTGGTCACATTGACGTTGAGGTTCAGTTGGTTACGGGGCCAGTGAGGGAGGCTGCCGATTTATTTCCGTGCTTTCACGAGCTTCATGTGGATGCAGGGGCTTCTGATCATATCCCTATAGTAGTGTTTACGAATGGTCTCCCGAGTCAGAATGGGGATAGGAGAAAGGGTAGTAGGCGGTTCCAATTTGAAGCATTTTGGACTAAGAAAGAAAGTTGTGAAAAGATTGTTTCTGATGCTTGGGTAAAGGATGATAATGCGTTGGCAGTTGGGTCCAAATTAAACACGGTGTCTCAGGCCTTGTCGCAATGGAATAAAGATACATTTGGCAATATTCCAAAGCGGATTACTAAGTTGAATACTGAGGTACAGAGAACAACAACAACAATGGCGGTTTCCGGTGATCTGAAGATGAAGATCGTCAAAGGCGATGTCGGTTACGTCCTCGAAGATGTGCCTCATCTCGCCGATTACTTGCCGATCTTCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

749

Amino Acids

82.5

Weight (kDa)

8.9

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 35 - 107 1.3e-08 Domain of unknown function (DUF4283)
Exo_endo_phos PF03372 507 - 625 2.9e-08 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 409
AccB1I GGYRCC 1 cut(s) 888
AccII CGCG 2 cut(s) 264, 952
AclWI GGATC 7 cut(s) 63, 74, 335, 557, 1307, 1320, 1759
AcoI YGGCCR 5 cut(s) 36, 564, 751, 879, 1288
AcsI RAATTY 3 cut(s) 450, 587, 1092
AcuI CTGAAG 2 cut(s) 53, 2186
AcyI GRCGYC 1 cut(s) 889
AfaI GTAC 5 cut(s) 166, 602, 826, 1675, 2127
AfeI AGCGCT 1 cut(s) 156
AfiI CCNNNNNNNGG 3 cut(s) 217, 1462, 1594
AjnI CCWGG 3 cut(s) 1020, 1348, 1593
AjuI GAANNNNNNNTTGG 4 cut(s) 578, 610, 804, 836
AloI GAACNNNNNNTCC 2 cut(s) 325, 357
AluBI AGCT 6 cut(s) 124, 371, 654, 857, 939, 1840
AluI AGCT 6 cut(s) 124, 371, 654, 857, 939, 1840
Alw21I GWGCWC 2 cut(s) 307, 986
Alw26I GTCTC 7 cut(s) 384, 532, 629, 1101, 1604, 1901, 2055
Alw44I GTGCAC 2 cut(s) 303, 982
AlwI GGATC 7 cut(s) 63, 74, 335, 557, 1307, 1320, 1759
Ama87I CYCGRG 5 cut(s) 655, 792, 1026, 1154, 1900
Aor51HI AGCGCT 1 cut(s) 156
ApaLI GTGCAC 2 cut(s) 303, 982
ApeKI GCWGC 3 cut(s) 1446, 1452, 1811
ApoI RAATTY 3 cut(s) 450, 587, 1092
ArsI GACNNNNNNTTYG 2 cut(s) 2175, 2207
AspLEI GCGC 5 cut(s) 157, 891, 1348, 1440, 1446
AspS9I GGNCC 6 cut(s) 1008, 1024, 1055, 1352, 1796, 2031
AsuHPI GGTGA 5 cut(s) 211, 1184, 1223, 1241, 2171
AsuII TTCGAA 1 cut(s) 817
AvaI CYCGRG 5 cut(s) 655, 792, 1026, 1154, 1900
AvaII GGWCC 3 cut(s) 1008, 1352, 2031
BaeGI GKGCMC 2 cut(s) 307, 986
BaeI ACNNNNGTAYC 2 cut(s) 691, 724
BalI TGGCCA 5 cut(s) 38, 566, 753, 881, 1290
BamHI GGATCC 1 cut(s) 1312
BanI GGYRCC 1 cut(s) 888
BanII GRGCYC 1 cut(s) 1071
BauI CACGAG 1 cut(s) 1835
BbsI GAAGAC 4 cut(s) 719, 1148, 1244, 1591
Bbv12I GWGCWC 2 cut(s) 307, 986
BbvCI CCTCAGC 1 cut(s) 158
BbvI GCAGC 3 cut(s) 1458, 1464, 1798
BccI CCATC 7 cut(s) 540, 743, 829, 839, 1108, 1280, 1600
BceAI ACGGC 2 cut(s) 843, 876
BciT130I CCWGG 3 cut(s) 1022, 1350, 1595
BciVI GTATCC 2 cut(s) 225, 372
BclI TGATCA 1 cut(s) 1864
BcoDI GTCTC 7 cut(s) 384, 532, 629, 1101, 1604, 1901, 2055
BfaI CTAG 4 cut(s) 14, 359, 777, 1242
BfmI CTRYAG 1 cut(s) 1875
BfoI RGCGCY 2 cut(s) 158, 892
BfuAI ACCTGC 1 cut(s) 409
BfuI GTATCC 2 cut(s) 225, 372
BglI GCCNNNNNGGC 1 cut(s) 1296
BisI GCNGC 7 cut(s) 176, 887, 1335, 1447, 1450, 1453, 1812
BlsI GCNGC 7 cut(s) 177, 888, 1336, 1448, 1451, 1454, 1813
BmcAI AGTACT 1 cut(s) 166
Bme1390I CCNGG 3 cut(s) 1022, 1350, 1595
Bme18I GGWCC 3 cut(s) 1008, 1352, 2031
BmeT110I CYCGRG 5 cut(s) 655, 792, 1026, 1154, 1900
BmgT120I GGNCC 6 cut(s) 1008, 1024, 1055, 1352, 1796, 2031
BmiI GGNNCC 7 cut(s) 890, 1009, 1314, 1541, 1797, 1940, 2032
BmrFI CCNGG 3 cut(s) 1022, 1350, 1595
BmrI ACTGGG 2 cut(s) 754, 1544
BmsI GCATC 4 cut(s) 244, 1351, 1840, 1984
BmuI ACTGGG 2 cut(s) 754, 1544
BpiI GAAGAC 4 cut(s) 719, 1148, 1244, 1591
BpmI CTGGAG 1 cut(s) 1125
Bpu10I CCTNAGC 2 cut(s) 158, 1065
Bpu14I TTCGAA 1 cut(s) 817
BsaBI GATNNNNATC 2 cut(s) 258, 2174
BsaHI GRCGYC 1 cut(s) 889
BsaI GGTCTC 1 cut(s) 1901
BsaJI CCNNGG 1 cut(s) 287
BsaWI WCCGGW 2 cut(s) 228, 2156
BsaXI ACNNNNNCTCC 8 cut(s) 297, 327, 1393, 1417, 1423, 1447, 1912, 1942
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 1462, 1594
Bse1I ACTGG 7 cut(s) 574, 749, 979, 1150, 1415, 1539, 1799
Bse3DI GCAATG 1 cut(s) 2072
Bse8I GATNNNNATC 2 cut(s) 258, 2174
BseBI CCWGG 3 cut(s) 1022, 1350, 1595
BseDI CCNNGG 1 cut(s) 287
BseGI GGATG 9 cut(s) 52, 754, 772, 903, 923, 1291, 1673, 1855, 2014
BseJI GATNNNNATC 2 cut(s) 258, 2174
BseLI CCNNNNNNNGG 3 cut(s) 217, 1462, 1594
BseMI GCAATG 1 cut(s) 2072
BseMII CTCAG 7 cut(s) 149, 789, 1056, 1182, 1320, 2066, 2112
BseNI ACTGG 7 cut(s) 574, 749, 979, 1150, 1415, 1539, 1799
BseRI GAGGAG 5 cut(s) 175, 233, 305, 1003, 1461
BseSI GKGCMC 2 cut(s) 307, 986
BseXI GCAGC 3 cut(s) 1458, 1464, 1798
Bsh1236I CGCG 2 cut(s) 264, 952
Bsh1285I CGRYCG 1 cut(s) 706
BshNI GGYRCC 1 cut(s) 888
BsiEI CGRYCG 1 cut(s) 706
BsiHKAI GWGCWC 2 cut(s) 307, 986
BsiHKCI CYCGRG 5 cut(s) 655, 792, 1026, 1154, 1900
BsiSI CCGG 2 cut(s) 229, 2157
BslFI GGGAC 1 cut(s) 1545
BslI CCNNNNNNNGG 3 cut(s) 217, 1462, 1594
BsmAI GTCTC 7 cut(s) 384, 532, 629, 1101, 1604, 1901, 2055
BsmBI CGTCTC 1 cut(s) 1604
BsmFI GGGAC 1 cut(s) 1545
BsmI GAATGC 1 cut(s) 507
Bso31I GGTCTC 1 cut(s) 1901
BsoBI CYCGRG 5 cut(s) 655, 792, 1026, 1154, 1900
Bsp119I TTCGAA 1 cut(s) 817
Bsp1286I GDGCHC 3 cut(s) 307, 986, 1071
BspCNI CTCAG 7 cut(s) 150, 790, 1057, 1183, 1321, 2065, 2113
BspFNI CGCG 2 cut(s) 264, 952
BspLI GGNNCC 7 cut(s) 890, 1009, 1314, 1541, 1797, 1940, 2032
BspMI ACCTGC 1 cut(s) 409
BspPI GGATC 7 cut(s) 63, 74, 335, 557, 1307, 1320, 1759
BspQI GCTCTTC 1 cut(s) 946
BspT104I TTCGAA 1 cut(s) 817
BspT107I GGYRCC 1 cut(s) 888
BspTNI GGTCTC 1 cut(s) 1901
BsrDI GCAATG 1 cut(s) 2072
BsrI ACTGG 7 cut(s) 574, 749, 979, 1150, 1415, 1539, 1799
BssECI CCNNGG 1 cut(s) 287
BssNI GRCGYC 1 cut(s) 889
BssSI CACGAG 1 cut(s) 1835
BssT1I CCWWGG 1 cut(s) 287
Bst2BI CACGAG 1 cut(s) 1835
Bst2UI CCWGG 3 cut(s) 1022, 1350, 1595
Bst4CI ACNGT 6 cut(s) 337, 704, 784, 965, 1678, 2047
Bst6I CTCTTC 7 cut(s) 189, 242, 801, 946, 1200, 1399, 1718
BstACI GRCGYC 1 cut(s) 889
BstBI TTCGAA 1 cut(s) 817
BstC8I GCNNGC 4 cut(s) 1059, 1442, 1706, 1710
BstDEI CTNAG 9 cut(s) 158, 798, 1065, 1191, 1329, 1962, 2052, 2109, 2121
BstF5I GGATG 9 cut(s) 52, 754, 772, 903, 923, 1291, 1673, 1855, 2014
BstFNI CGCG 2 cut(s) 264, 952
BstH2I RGCGCY 2 cut(s) 158, 892
BstHHI GCGC 5 cut(s) 157, 891, 1348, 1440, 1446
BstMAI GTCTC 7 cut(s) 384, 532, 629, 1101, 1604, 1901, 2055
BstMCI CGRYCG 1 cut(s) 706
BstMWI GCNNNNNNNGC 4 cut(s) 1296, 1343, 1446, 1452
BstNI CCWGG 3 cut(s) 1022, 1350, 1595
BstSCI CCNGG 3 cut(s) 1020, 1348, 1593
BstSFI CTRYAG 1 cut(s) 1875
BstSLI GKGCMC 2 cut(s) 307, 986
BstUI CGCG 2 cut(s) 264, 952
BstV1I GCAGC 3 cut(s) 1458, 1464, 1798
BstV2I GAAGAC 4 cut(s) 719, 1148, 1244, 1591
BstX2I RGATCY 4 cut(s) 55, 79, 1312, 1751
BstYI RGATCY 4 cut(s) 55, 79, 1312, 1751
BsuI GTATCC 2 cut(s) 225, 372
BtgZI GCGATG 1 cut(s) 2202
BtsCI GGATG 9 cut(s) 52, 754, 772, 903, 923, 1291, 1673, 1855, 2014
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 5 cut(s) 318, 567, 986, 1422, 1806
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 4 cut(s) 1059, 1442, 1706, 1710
CfoI GCGC 5 cut(s) 157, 891, 1348, 1440, 1446
Cfr13I GGNCC 6 cut(s) 1008, 1024, 1055, 1352, 1796, 2031
CsiI ACCWGGT 1 cut(s) 1593
Csp6I GTAC 5 cut(s) 165, 601, 825, 1674, 2126
CspCI CAANNNNNGTGG 2 cut(s) 1243, 1278
CviAII CATG 3 cut(s) 647, 1166, 1844
CviQI GTAC 5 cut(s) 165, 601, 825, 1674, 2126
DdeI CTNAG 9 cut(s) 158, 798, 1065, 1191, 1329, 1962, 2052, 2109, 2121
DinI GGCGCC 1 cut(s) 890
DraI TTTAAA 1 cut(s) 1035
EaeI YGGCCR 5 cut(s) 36, 564, 751, 879, 1288
Eam1104I CTCTTC 7 cut(s) 189, 242, 801, 946, 1200, 1399, 1718
EarI CTCTTC 7 cut(s) 189, 242, 801, 946, 1200, 1399, 1718
EciI GGCGGA 1 cut(s) 867
Eco130I CCWWGG 1 cut(s) 287
Eco147I AGGCCT 2 cut(s) 1744, 2057
Eco24I GRGCYC 1 cut(s) 1071
Eco31I GGTCTC 1 cut(s) 1901
Eco47I GGWCC 3 cut(s) 1008, 1352, 2031
Eco47III AGCGCT 1 cut(s) 156
Eco57I CTGAAG 2 cut(s) 53, 2186
Eco88I CYCGRG 5 cut(s) 655, 792, 1026, 1154, 1900
EcoO109I RGGNCCY 1 cut(s) 1008
EcoRII CCWGG 3 cut(s) 1020, 1348, 1593
EcoT14I CCWWGG 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 1071
EgeI GGCGCC 1 cut(s) 890
EheI GGCGCC 1 cut(s) 890
ErhI CCWWGG 1 cut(s) 287
Esp3I CGTCTC 1 cut(s) 1604
FaeI CATG 3 cut(s) 650, 1169, 1847
FaqI GGGAC 1 cut(s) 1545
FatI CATG 3 cut(s) 646, 1165, 1843
FauI CCCGC 3 cut(s) 945, 1551, 1697
FbaI TGATCA 1 cut(s) 1864
Fnu4HI GCNGC 7 cut(s) 176, 887, 1335, 1447, 1450, 1453, 1812
FokI GGATG 9 cut(s) 59, 761, 779, 910, 910, 1298, 1680, 1862, 2021
FriOI GRGCYC 1 cut(s) 1071
Fsp4HI GCNGC 7 cut(s) 176, 887, 1335, 1447, 1450, 1453, 1812
FspBI CTAG 4 cut(s) 14, 359, 777, 1242
GlaI GCGC 5 cut(s) 156, 890, 1347, 1439, 1445
GluI GCNGC 7 cut(s) 176, 887, 1335, 1447, 1450, 1453, 1812
GsuI CTGGAG 1 cut(s) 1125
HaeII RGCGCY 2 cut(s) 158, 892
HapII CCGG 2 cut(s) 229, 2157
HhaI GCGC 5 cut(s) 157, 891, 1348, 1440, 1446
Hin1I GRCGYC 1 cut(s) 889
Hin1II CATG 3 cut(s) 650, 1169, 1847
Hin6I GCGC 5 cut(s) 155, 889, 1346, 1438, 1444
HinP1I GCGC 5 cut(s) 155, 889, 1346, 1438, 1444
HindIII AAGCTT 2 cut(s) 122, 369
HinfI GANTC 6 cut(s) 352, 871, 956, 1318, 1659, 1903
HpaII CCGG 2 cut(s) 229, 2157
HphI GGTGA 5 cut(s) 211, 1184, 1223, 1241, 2171
Hpy166II GTNNAC 4 cut(s) 305, 356, 984, 1887
Hpy188III TCNNGA 8 cut(s) 376, 553, 1104, 1156, 1322, 1603, 1835, 1900
Hpy8I GTNNAC 4 cut(s) 305, 356, 984, 1887
Hpy99I CGWCG 1 cut(s) 897
HpyAV CCTTC 3 cut(s) 253, 1027, 1333
HpyCH4III ACNGT 6 cut(s) 337, 704, 784, 965, 1678, 2047
HpyCH4IV ACGT 2 cut(s) 1773, 2199
HpyCH4V TGCA 7 cut(s) 257, 305, 760, 984, 1364, 1712, 1853
HpyF10VI GCNNNNNNNGC 4 cut(s) 1296, 1343, 1446, 1452
HpyF3I CTNAG 9 cut(s) 158, 798, 1065, 1191, 1329, 1962, 2052, 2109, 2121
HpySE526I ACGT 2 cut(s) 1773, 2199
Hsp92I GRCGYC 1 cut(s) 889
Hsp92II CATG 3 cut(s) 650, 1169, 1847
HspAI GCGC 5 cut(s) 155, 889, 1346, 1438, 1444
KasI GGCGCC 1 cut(s) 888
Ksp22I TGATCA 1 cut(s) 1864
LguI GCTCTTC 1 cut(s) 946
LmnI GCTCC 1 cut(s) 854
Lsp1109I GCAGC 3 cut(s) 1458, 1464, 1798
LweI GCATC 4 cut(s) 244, 1351, 1840, 1984
MabI ACCWGGT 1 cut(s) 1593
MaeI CTAG 4 cut(s) 14, 359, 777, 1242
MaeII ACGT 2 cut(s) 1773, 2199
MaeIII GTNAC 7 cut(s) 199, 473, 666, 1172, 1763, 1789, 2195
MfeI CAATTG 3 cut(s) 738, 755, 875
MflI RGATCY 4 cut(s) 55, 79, 1312, 1751
MhlI GDGCHC 3 cut(s) 307, 986, 1071
MlsI TGGCCA 5 cut(s) 38, 566, 753, 881, 1290
MluNI TGGCCA 5 cut(s) 38, 566, 753, 881, 1290
Mly113I GGCGCC 1 cut(s) 889
MlyI GAGTC 2 cut(s) 361, 1912
MmeI TCCRAC 6 cut(s) 689, 875, 1259, 1499, 1660, 1700
Mox20I TGGCCA 5 cut(s) 38, 566, 753, 881, 1290
MscI TGGCCA 5 cut(s) 38, 566, 753, 881, 1290
MseI TTAA 5 cut(s) 863, 1034, 1113, 1562, 2039
MslI CAYNNNNRTG 3 cut(s) 1170, 1272, 1848
Msp20I TGGCCA 5 cut(s) 38, 566, 753, 881, 1290
MspA1I CMGCKG 1 cut(s) 1449
MspI CCGG 2 cut(s) 229, 2157
MspR9I CCNGG 3 cut(s) 1022, 1350, 1595
MunI CAATTG 3 cut(s) 738, 755, 875
Mva1269I GAATGC 1 cut(s) 507
MvaI CCWGG 3 cut(s) 1022, 1350, 1595
MvnI CGCG 2 cut(s) 264, 952
MwoI GCNNNNNNNGC 4 cut(s) 1296, 1343, 1446, 1452
NarI GGCGCC 1 cut(s) 889
NlaIII CATG 3 cut(s) 650, 1169, 1847
NlaIV GGNNCC 7 cut(s) 890, 1009, 1314, 1541, 1797, 1940, 2032
NmuCI GTSAC 3 cut(s) 199, 1172, 1763
NspV TTCGAA 1 cut(s) 817
PaeR7I CTCGAG 1 cut(s) 1154
PceI AGGCCT 2 cut(s) 1744, 2057
PciSI GCTCTTC 1 cut(s) 946
PcsI WCGNNNNNNNCGW 3 cut(s) 436, 1619, 2184
PctI GAATGC 1 cut(s) 507
PfeI GAWTC 4 cut(s) 871, 956, 1318, 1659
PflFI GACNNNGTC 2 cut(s) 718, 1595
PkrI GCNGC 7 cut(s) 177, 888, 1336, 1448, 1451, 1454, 1813
PleI GAGTC 2 cut(s) 360, 1911
PluTI GGCGCC 1 cut(s) 892
PpsI GAGTC 2 cut(s) 360, 1911
PpuMI RGGWCCY 1 cut(s) 1008
Psp5II RGGWCCY 1 cut(s) 1008
Psp6I CCWGG 3 cut(s) 1020, 1348, 1593
PspGI CCWGG 3 cut(s) 1020, 1348, 1593
PspN4I GGNNCC 7 cut(s) 890, 1009, 1314, 1541, 1797, 1940, 2032
PspPI GGNCC 6 cut(s) 1008, 1024, 1055, 1352, 1796, 2031
PspPPI RGGWCCY 1 cut(s) 1008
PsuI RGATCY 4 cut(s) 55, 79, 1312, 1751
PsyI GACNNNGTC 2 cut(s) 718, 1595
RsaI GTAC 5 cut(s) 166, 602, 826, 1675, 2127
RsaNI GTAC 5 cut(s) 165, 601, 825, 1674, 2126
RseI CAYNNNNRTG 3 cut(s) 1170, 1272, 1848
SapI GCTCTTC 1 cut(s) 946
SaqAI TTAA 5 cut(s) 863, 1034, 1113, 1562, 2039
SatI GCNGC 7 cut(s) 176, 887, 1335, 1447, 1450, 1453, 1812
Sau96I GGNCC 6 cut(s) 1008, 1024, 1055, 1352, 1796, 2031
ScaI AGTACT 1 cut(s) 166
SchI GAGTC 2 cut(s) 361, 1912
ScrFI CCNGG 3 cut(s) 1022, 1350, 1595
SduI GDGCHC 3 cut(s) 307, 986, 1071
SexAI ACCWGGT 1 cut(s) 1593
SfaNI GCATC 4 cut(s) 244, 1351, 1840, 1984
SfcI CTRYAG 1 cut(s) 1875
SfoI GGCGCC 1 cut(s) 890
Sfr274I CTCGAG 1 cut(s) 1154
SfuI TTCGAA 1 cut(s) 817
SinI GGWCC 3 cut(s) 1008, 1352, 2031
SlaI CTCGAG 1 cut(s) 1154
SmiMI CAYNNNNRTG 3 cut(s) 1170, 1272, 1848
SmlI CTYRAG 1 cut(s) 1154
SmoI CTYRAG 1 cut(s) 1154
SseBI AGGCCT 2 cut(s) 1744, 2057
SspDI GGCGCC 1 cut(s) 888
SspI AATATT 1 cut(s) 2092
SspMI CTAG 4 cut(s) 14, 359, 777, 1242
StuI AGGCCT 2 cut(s) 1744, 2057
StyD4I CCNGG 3 cut(s) 1020, 1348, 1593
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 6 cut(s) 337, 704, 784, 965, 1678, 2047
TaiI ACGT 2 cut(s) 1776, 2202
TaqI TCGA 6 cut(s) 787, 817, 1155, 1258, 1622, 2205
TatI WGTACW 1 cut(s) 164
TauI GCSGC 4 cut(s) 178, 889, 1337, 1452
TfiI GAWTC 4 cut(s) 871, 956, 1318, 1659
Tru1I TTAA 5 cut(s) 863, 1034, 1113, 1562, 2039
Tru9I TTAA 5 cut(s) 863, 1034, 1113, 1562, 2039
TscAI CASTG 5 cut(s) 325, 574, 986, 1422, 1806
TseFI GTSAC 3 cut(s) 199, 1172, 1763
TseI GCWGC 3 cut(s) 1446, 1452, 1811
Tsp45I GTSAC 3 cut(s) 199, 1172, 1763
TspDTI ATGAA 6 cut(s) 185, 397, 912, 1359, 1832, 2186
TspGWI ACGGA 3 cut(s) 492, 881, 1815
TspRI CASTG 5 cut(s) 325, 574, 986, 1422, 1806
Tth111I GACNNNGTC 2 cut(s) 718, 1595
VneI GTGCAC 2 cut(s) 303, 982
VpaK11BI GGWCC 3 cut(s) 1008, 1352, 2031
XapI RAATTY 3 cut(s) 450, 587, 1092
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XhoI CTCGAG 1 cut(s) 1154
XspI CTAG 4 cut(s) 14, 359, 777, 1242
ZrmI AGTACT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.