ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 128 - 174 | 3.2e-08 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 415 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 971 |
| AccII | CGCG | 1 cut(s) | 511 |
| AciI | CCGC | 1 cut(s) | 511 |
| AclWI | GGATC | 3 cut(s) | 238, 564, 741 |
| AcuI | CTGAAG | 3 cut(s) | 162, 436, 923 |
| AfaI | GTAC | 1 cut(s) | 271 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 425, 431, 971 |
| AgsI | TTSAA | 3 cut(s) | 382, 749, 782 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 850, 952 |
| AjnI | CCWGG | 1 cut(s) | 424 |
| Alw26I | GTCTC | 4 cut(s) | 336, 429, 598, 800 |
| AlwI | GGATC | 3 cut(s) | 238, 564, 741 |
| AoxI | GGCC | 1 cut(s) | 663 |
| AspLEI | GCGC | 1 cut(s) | 405 |
| AsuC2I | CCSGG | 2 cut(s) | 365, 952 |
| AsuHPI | GGTGA | 2 cut(s) | 653, 671 |
| AxyI | CCTNAGG | 1 cut(s) | 276 |
| BanI | GGYRCC | 1 cut(s) | 415 |
| BccI | CCATC | 2 cut(s) | 901, 965 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 90, 124 |
| BciT130I | CCWGG | 1 cut(s) | 426 |
| BcnI | CCSGG | 2 cut(s) | 365, 952 |
| BcoDI | GTCTC | 4 cut(s) | 336, 429, 598, 800 |
| BfaI | CTAG | 3 cut(s) | 530, 573, 997 |
| BfmI | CTRYAG | 1 cut(s) | 346 |
| Bme1390I | CCNGG | 3 cut(s) | 365, 426, 952 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 850, 952 |
| BmiI | GGNNCC | 3 cut(s) | 177, 417, 503 |
| BmrFI | CCNGG | 3 cut(s) | 365, 426, 952 |
| BmrI | ACTGGG | 1 cut(s) | 598 |
| BmuI | ACTGGG | 1 cut(s) | 598 |
| BpmI | CTGGAG | 1 cut(s) | 973 |
| BpuMI | CCSGG | 2 cut(s) | 365, 952 |
| BsaJI | CCNNGG | 4 cut(s) | 179, 247, 424, 873 |
| BsaWI | WCCGGW | 1 cut(s) | 469 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 966, 996 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 425, 431, 971 |
| Bse1I | ACTGG | 2 cut(s) | 593, 990 |
| Bse21I | CCTNAGG | 1 cut(s) | 276 |
| BseBI | CCWGG | 1 cut(s) | 426 |
| BseDI | CCNNGG | 4 cut(s) | 179, 247, 424, 873 |
| BseGI | GGATG | 1 cut(s) | 834 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 425, 431, 971 |
| BseNI | ACTGG | 2 cut(s) | 593, 990 |
| BseRI | GAGGAG | 3 cut(s) | 242, 335, 566 |
| Bsh1236I | CGCG | 1 cut(s) | 511 |
| Bsh1285I | CGRYCG | 2 cut(s) | 110, 563 |
| BshFI | GGCC | 1 cut(s) | 665 |
| BshNI | GGYRCC | 1 cut(s) | 415 |
| BsiEI | CGRYCG | 2 cut(s) | 110, 563 |
| BsiSI | CCGG | 4 cut(s) | 364, 470, 652, 951 |
| BslFI | GGGAC | 3 cut(s) | 61, 239, 605 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 425, 431, 971 |
| BsmAI | GTCTC | 4 cut(s) | 336, 429, 598, 800 |
| BsmBI | CGTCTC | 1 cut(s) | 598 |
| BsmFI | GGGAC | 3 cut(s) | 61, 239, 605 |
| BsnI | GGCC | 1 cut(s) | 665 |
| Bsp143I | GATC | 4 cut(s) | 243, 556, 733, 772 |
| Bsp19I | CCATGG | 3 cut(s) | 179, 247, 873 |
| BspACI | CCGC | 1 cut(s) | 511 |
| BspANI | GGCC | 1 cut(s) | 665 |
| BspFNI | CGCG | 1 cut(s) | 511 |
| BspLI | GGNNCC | 3 cut(s) | 177, 417, 503 |
| BspMAI | CTGCAG | 1 cut(s) | 350 |
| BspPI | GGATC | 3 cut(s) | 238, 564, 741 |
| BspT107I | GGYRCC | 1 cut(s) | 415 |
| BsrI | ACTGG | 2 cut(s) | 593, 990 |
| BssECI | CCNNGG | 4 cut(s) | 179, 247, 424, 873 |
| BssMI | GATC | 4 cut(s) | 243, 556, 733, 772 |
| BssT1I | CCWWGG | 3 cut(s) | 179, 247, 873 |
| Bst2UI | CCWGG | 1 cut(s) | 426 |
| Bst4CI | ACNGT | 7 cut(s) | 82, 135, 269, 564, 609, 636, 928 |
| Bst6I | CTCTTC | 2 cut(s) | 18, 138 |
| BstC8I | GCNNGC | 2 cut(s) | 582, 767 |
| BstDEI | CTNAG | 1 cut(s) | 276 |
| BstDSI | CCRYGG | 3 cut(s) | 179, 247, 873 |
| BstEII | GGTNACC | 1 cut(s) | 465 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 423 |
| BstF5I | GGATG | 1 cut(s) | 834 |
| BstFNI | CGCG | 1 cut(s) | 511 |
| BstHHI | GCGC | 1 cut(s) | 405 |
| BstKTI | GATC | 4 cut(s) | 246, 559, 736, 775 |
| BstMAI | GTCTC | 4 cut(s) | 336, 429, 598, 800 |
| BstMBI | GATC | 4 cut(s) | 243, 556, 733, 772 |
| BstMCI | CGRYCG | 2 cut(s) | 110, 563 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 400 |
| BstNI | CCWGG | 1 cut(s) | 426 |
| BstPI | GGTNACC | 1 cut(s) | 465 |
| BstSCI | CCNGG | 3 cut(s) | 363, 424, 950 |
| BstSFI | CTRYAG | 1 cut(s) | 346 |
| BstUI | CGCG | 1 cut(s) | 511 |
| BstX2I | RGATCY | 1 cut(s) | 243 |
| BstYI | RGATCY | 1 cut(s) | 243 |
| Bsu36I | CCTNAGG | 1 cut(s) | 276 |
| BsuRI | GGCC | 1 cut(s) | 665 |
| BtgI | CCRYGG | 3 cut(s) | 179, 247, 873 |
| BtsCI | GGATG | 1 cut(s) | 834 |
| BtsI | GCAGTG | 2 cut(s) | 113, 355 |
| BtsIMutI | CAGTG | 3 cut(s) | 113, 131, 355 |
| Cac8I | GCNNGC | 2 cut(s) | 582, 767 |
| CfoI | GCGC | 1 cut(s) | 405 |
| CseI | GACGC | 1 cut(s) | 517 |
| Csp6I | GTAC | 1 cut(s) | 270 |
| CviAII | CATG | 6 cut(s) | 61, 154, 180, 248, 412, 874 |
| CviQI | GTAC | 1 cut(s) | 270 |
| DdeI | CTNAG | 1 cut(s) | 276 |
| DpnI | GATC | 4 cut(s) | 245, 558, 735, 774 |
| DpnII | GATC | 4 cut(s) | 243, 556, 733, 772 |
| DraI | TTTAAA | 1 cut(s) | 328 |
| DriI | GACNNNNNGTC | 2 cut(s) | 850, 952 |
| Eam1104I | CTCTTC | 2 cut(s) | 18, 138 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 850, 952 |
| EarI | CTCTTC | 2 cut(s) | 18, 138 |
| Eco130I | CCWWGG | 3 cut(s) | 179, 247, 873 |
| Eco57I | CTGAAG | 3 cut(s) | 162, 436, 923 |
| Eco81I | CCTNAGG | 1 cut(s) | 276 |
| Eco91I | GGTNACC | 1 cut(s) | 465 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 423 |
| EcoO65I | GGTNACC | 1 cut(s) | 465 |
| EcoRII | CCWGG | 1 cut(s) | 424 |
| EcoT14I | CCWWGG | 3 cut(s) | 179, 247, 873 |
| EcoT22I | ATGCAT | 1 cut(s) | 673 |
| ErhI | CCWWGG | 3 cut(s) | 179, 247, 873 |
| Esp3I | CGTCTC | 1 cut(s) | 598 |
| FaeI | CATG | 6 cut(s) | 64, 157, 183, 251, 415, 877 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 830, 862, 896, 928 |
| FaqI | GGGAC | 3 cut(s) | 61, 239, 605 |
| FatI | CATG | 6 cut(s) | 60, 153, 179, 247, 411, 873 |
| FokI | GGATG | 1 cut(s) | 841 |
| FspBI | CTAG | 3 cut(s) | 530, 573, 997 |
| GlaI | GCGC | 1 cut(s) | 404 |
| GsuI | CTGGAG | 1 cut(s) | 973 |
| HaeIII | GGCC | 1 cut(s) | 665 |
| HapII | CCGG | 4 cut(s) | 364, 470, 652, 951 |
| HgaI | GACGC | 1 cut(s) | 517 |
| HhaI | GCGC | 1 cut(s) | 405 |
| Hin1II | CATG | 6 cut(s) | 64, 157, 183, 251, 415, 877 |
| Hin6I | GCGC | 1 cut(s) | 403 |
| HinP1I | GCGC | 1 cut(s) | 403 |
| HincII | GTYRAC | 1 cut(s) | 541 |
| HindII | GTYRAC | 1 cut(s) | 541 |
| HinfI | GANTC | 8 cut(s) | 4, 55, 71, 146, 357, 704, 869, 920 |
| HpaII | CCGG | 4 cut(s) | 364, 470, 652, 951 |
| HphI | GGTGA | 2 cut(s) | 653, 671 |
| Hpy166II | GTNNAC | 1 cut(s) | 541 |
| Hpy188I | TCNGA | 2 cut(s) | 142, 151 |
| Hpy188III | TCNNGA | 4 cut(s) | 482, 521, 693, 917 |
| Hpy8I | GTNNAC | 1 cut(s) | 541 |
| Hpy99I | CGWCG | 1 cut(s) | 511 |
| HpyAV | CCTTC | 3 cut(s) | 460, 808, 826 |
| HpyCH4III | ACNGT | 7 cut(s) | 82, 135, 269, 564, 609, 636, 928 |
| HpyCH4V | TGCA | 9 cut(s) | 101, 118, 131, 284, 316, 348, 580, 671, 730 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 400 |
| HpyF3I | CTNAG | 1 cut(s) | 276 |
| Hsp92II | CATG | 6 cut(s) | 64, 157, 183, 251, 415, 877 |
| HspAI | GCGC | 1 cut(s) | 403 |
| Kzo9I | GATC | 4 cut(s) | 243, 556, 733, 772 |
| LmnI | GCTCC | 1 cut(s) | 175 |
| MaeI | CTAG | 3 cut(s) | 530, 573, 997 |
| MaeIII | GTNAC | 3 cut(s) | 263, 465, 518 |
| MalI | GATC | 4 cut(s) | 245, 558, 735, 774 |
| MboI | GATC | 4 cut(s) | 243, 556, 733, 772 |
| MboII | GAAGA | 6 cut(s) | 35, 155, 713, 731, 794, 916 |
| MflI | RGATCY | 1 cut(s) | 243 |
| MluCI | AATT | 5 cut(s) | 87, 102, 125, 444, 887 |
| MlyI | GAGTC | 4 cut(s) | 13, 80, 155, 863 |
| MmeI | TCCRAC | 1 cut(s) | 286 |
| Mph1103I | ATGCAT | 1 cut(s) | 673 |
| MseI | TTAA | 3 cut(s) | 240, 327, 882 |
| MspI | CCGG | 4 cut(s) | 364, 470, 652, 951 |
| MspR9I | CCNGG | 3 cut(s) | 365, 426, 952 |
| MvaI | CCWGG | 1 cut(s) | 426 |
| MvnI | CGCG | 1 cut(s) | 511 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 400 |
| NciI | CCSGG | 2 cut(s) | 365, 952 |
| NcoI | CCATGG | 3 cut(s) | 179, 247, 873 |
| NdeII | GATC | 4 cut(s) | 243, 556, 733, 772 |
| NlaIII | CATG | 6 cut(s) | 64, 157, 183, 251, 415, 877 |
| NlaIV | GGNNCC | 3 cut(s) | 177, 417, 503 |
| NmuCI | GTSAC | 1 cut(s) | 518 |
| NsiI | ATGCAT | 1 cut(s) | 673 |
| PfeI | GAWTC | 4 cut(s) | 55, 357, 704, 920 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 971 |
| PleI | GAGTC | 4 cut(s) | 12, 79, 154, 863 |
| PpsI | GAGTC | 4 cut(s) | 12, 79, 154, 863 |
| Psp6I | CCWGG | 1 cut(s) | 424 |
| PspEI | GGTNACC | 1 cut(s) | 465 |
| PspGI | CCWGG | 1 cut(s) | 424 |
| PspN4I | GGNNCC | 3 cut(s) | 177, 417, 503 |
| PstI | CTGCAG | 1 cut(s) | 350 |
| PsuI | RGATCY | 1 cut(s) | 243 |
| RsaI | GTAC | 1 cut(s) | 271 |
| RsaNI | GTAC | 1 cut(s) | 270 |
| SaqAI | TTAA | 3 cut(s) | 240, 327, 882 |
| Sau3AI | GATC | 4 cut(s) | 243, 556, 733, 772 |
| SchI | GAGTC | 4 cut(s) | 13, 80, 155, 863 |
| ScrFI | CCNGG | 3 cut(s) | 365, 426, 952 |
| SfcI | CTRYAG | 1 cut(s) | 346 |
| Sse9I | AATT | 5 cut(s) | 87, 102, 125, 444, 887 |
| SsiI | CCGC | 1 cut(s) | 511 |
| SspMI | CTAG | 3 cut(s) | 530, 573, 997 |
| StyD4I | CCNGG | 3 cut(s) | 363, 424, 950 |
| StyI | CCWWGG | 3 cut(s) | 179, 247, 873 |
| TaaI | ACNGT | 7 cut(s) | 82, 135, 269, 564, 609, 636, 928 |
| TaqI | TCGA | 2 cut(s) | 370, 559 |
| TaqII | GACCGA | 1 cut(s) | 96 |
| TasI | AATT | 5 cut(s) | 87, 102, 125, 444, 887 |
| TfiI | GAWTC | 4 cut(s) | 55, 357, 704, 920 |
| Tru1I | TTAA | 3 cut(s) | 240, 327, 882 |
| Tru9I | TTAA | 3 cut(s) | 240, 327, 882 |
| TscAI | CASTG | 3 cut(s) | 120, 138, 355 |
| TseFI | GTSAC | 1 cut(s) | 518 |
| Tsp45I | GTSAC | 1 cut(s) | 518 |
| TspDTI | ATGAA | 2 cut(s) | 696, 845 |
| TspGWI | ACGGA | 2 cut(s) | 251, 447 |
| TspRI | CASTG | 3 cut(s) | 120, 138, 355 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 971 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 423 |
| XspI | CTAG | 3 cut(s) | 530, 573, 997 |
| Zsp2I | ATGCAT | 1 cut(s) | 673 |