Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Lectin_legB | PF00139 | 38 - 279 | 4.3e-63 | Legume lectin domain |
| Lectin_L-type_dom | PF18483 | 56 - 259 | 2.2e-06 | Legume lectin beta-barrel domain |
| Pkinase | PF00069 | 355 - 557 | 3.4e-46 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 357 - 557 | 1.5e-41 | Protein tyrosine and serine/threonine kinase |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 779, 1107 |
| Acc16I | TGCGCA | 1 cut(s) | 1263 |
| Acc36I | ACCTGC | 1 cut(s) | 209 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 466, 498 |
| AccII | CGCG | 1 cut(s) | 1519 |
| AciI | CCGC | 8 cut(s) | 110, 290, 402, 470, 515, 943, 1216, 1519 |
| AclWI | GGATC | 8 cut(s) | 497, 510, 533, 563, 576, 878, 1099, 1121 |
| AcoI | YGGCCR | 2 cut(s) | 18, 235 |
| AcsI | RAATTY | 2 cut(s) | 791, 1676 |
| AcuI | CTGAAG | 1 cut(s) | 103 |
| AfaI | GTAC | 3 cut(s) | 936, 1562, 1715 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 373, 466, 498, 521, 724, 927, 1347, 1432 |
| AgeI | ACCGGT | 1 cut(s) | 924 |
| AgsI | TTSAA | 9 cut(s) | 46, 206, 427, 811, 862, 1121, 1474, 1874, 1987 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 487 |
| AjnI | CCWGG | 3 cut(s) | 485, 497, 1083 |
| Alw21I | GWGCWC | 2 cut(s) | 1242, 1814 |
| Alw26I | GTCTC | 3 cut(s) | 9, 717, 1533 |
| Alw44I | GTGCAC | 2 cut(s) | 1238, 1810 |
| AlwI | GGATC | 8 cut(s) | 497, 510, 533, 563, 576, 878, 1099, 1121 |
| AoxI | GGCC | 8 cut(s) | 18, 235, 512, 754, 918, 1081, 1380, 1632 |
| ApaLI | GTGCAC | 2 cut(s) | 1238, 1810 |
| ApoI | RAATTY | 2 cut(s) | 791, 1676 |
| AsiGI | ACCGGT | 1 cut(s) | 924 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1187 |
| AspLEI | GCGC | 2 cut(s) | 178, 1264 |
| AspS9I | GGNCC | 3 cut(s) | 376, 489, 512 |
| AsuC2I | CCSGG | 2 cut(s) | 239, 719 |
| AsuHPI | GGTGA | 2 cut(s) | 179, 1499 |
| AvaII | GGWCC | 2 cut(s) | 376, 489 |
| BaeGI | GKGCMC | 2 cut(s) | 1242, 1814 |
| BalI | TGGCCA | 1 cut(s) | 20 |
| BamHI | GGATCC | 2 cut(s) | 502, 568 |
| BauI | CACGAG | 2 cut(s) | 957, 1403 |
| BbsI | GAAGAC | 2 cut(s) | 23, 174 |
| Bbv12I | GWGCWC | 2 cut(s) | 1242, 1814 |
| BbvCI | CCTCAGC | 1 cut(s) | 1929 |
| BccI | CCATC | 4 cut(s) | 114, 344, 548, 1245 |
| BceAI | ACGGC | 3 cut(s) | 163, 241, 953 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 152, 186 |
| BciT130I | CCWGG | 3 cut(s) | 487, 499, 1085 |
| BclI | TGATCA | 2 cut(s) | 136, 1768 |
| BcnI | CCSGG | 2 cut(s) | 239, 719 |
| BcoDI | GTCTC | 3 cut(s) | 9, 717, 1533 |
| BfaI | CTAG | 6 cut(s) | 416, 1079, 1127, 1332, 1581, 1980 |
| BfmI | CTRYAG | 3 cut(s) | 750, 1536, 1992 |
| BfoI | RGCGCY | 1 cut(s) | 179 |
| BfuAI | ACCTGC | 1 cut(s) | 209 |
| BglII | AGATCT | 2 cut(s) | 1123, 1185 |
| BlpI | GCTNAGC | 1 cut(s) | 1503 |
| Bme1390I | CCNGG | 5 cut(s) | 239, 487, 499, 719, 1085 |
| Bme18I | GGWCC | 2 cut(s) | 376, 489 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 487 |
| BmgT120I | GGNCC | 3 cut(s) | 376, 489, 512 |
| BmiI | GGNNCC | 5 cut(s) | 199, 504, 513, 570, 1951 |
| BmrFI | CCNGG | 5 cut(s) | 239, 487, 499, 719, 1085 |
| BmsI | GCATC | 6 cut(s) | 160, 808, 897, 1327, 1399, 1726 |
| BpiI | GAAGAC | 2 cut(s) | 23, 174 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 797, 829 |
| BpmI | CTGGAG | 3 cut(s) | 973, 1554, 1850 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1929 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1503 |
| BpuMI | CCSGG | 2 cut(s) | 239, 719 |
| BsaBI | GATNNNNATC | 5 cut(s) | 742, 869, 1190, 1317, 1767 |
| BsaI | GGTCTC | 1 cut(s) | 1533 |
| BsaJI | CCNNGG | 5 cut(s) | 497, 498, 1084, 1383, 1635 |
| BsaWI | WCCGGW | 3 cut(s) | 373, 924, 1946 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 263, 293, 1343, 1373, 1775, 1805 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 373, 466, 498, 521, 724, 927, 1347, 1432 |
| Bse118I | RCCGGY | 2 cut(s) | 404, 924 |
| Bse1I | ACTGG | 3 cut(s) | 990, 1044, 1737 |
| Bse3DI | GCAATG | 2 cut(s) | 1352, 1880 |
| Bse8I | GATNNNNATC | 5 cut(s) | 742, 869, 1190, 1317, 1767 |
| BseBI | CCWGG | 3 cut(s) | 487, 499, 1085 |
| BseDI | CCNNGG | 5 cut(s) | 497, 498, 1084, 1383, 1635 |
| BseGI | GGATG | 6 cut(s) | 106, 1136, 1256, 1414, 1741, 1816 |
| BseJI | GATNNNNATC | 5 cut(s) | 742, 869, 1190, 1317, 1767 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 373, 466, 498, 521, 724, 927, 1347, 1432 |
| BseMI | GCAATG | 2 cut(s) | 1352, 1880 |
| BseMII | CTCAG | 6 cut(s) | 561, 718, 1544, 1943, 1970, 1976 |
| BseNI | ACTGG | 3 cut(s) | 990, 1044, 1737 |
| BseRI | GAGGAG | 2 cut(s) | 535, 862 |
| BseSI | GKGCMC | 2 cut(s) | 1242, 1814 |
| BseYI | CCCAGC | 1 cut(s) | 564 |
| Bsh1236I | CGCG | 1 cut(s) | 1519 |
| BshFI | GGCC | 8 cut(s) | 20, 237, 514, 756, 920, 1083, 1382, 1634 |
| BshTI | ACCGGT | 1 cut(s) | 924 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1242, 1814 |
| BsiSI | CCGG | 6 cut(s) | 238, 374, 405, 719, 925, 1947 |
| BsiWI | CGTACG | 1 cut(s) | 934 |
| BslFI | GGGAC | 1 cut(s) | 1564 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 373, 466, 498, 521, 724, 927, 1347, 1432 |
| BsmAI | GTCTC | 3 cut(s) | 9, 717, 1533 |
| BsmFI | GGGAC | 1 cut(s) | 1564 |
| BsmI | GAATGC | 1 cut(s) | 1277 |
| BsnI | GGCC | 8 cut(s) | 20, 237, 514, 756, 920, 1083, 1382, 1634 |
| Bso31I | GGTCTC | 1 cut(s) | 1533 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1242, 1814 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1503 |
| BspACI | CCGC | 8 cut(s) | 110, 290, 402, 470, 515, 943, 1216, 1519 |
| BspANI | GGCC | 8 cut(s) | 20, 237, 514, 756, 920, 1083, 1382, 1634 |
| BspCNI | CTCAG | 6 cut(s) | 560, 717, 1543, 1942, 1969, 1975 |
| BspFNI | CGCG | 1 cut(s) | 1519 |
| BspLI | GGNNCC | 5 cut(s) | 199, 504, 513, 570, 1951 |
| BspMI | ACCTGC | 1 cut(s) | 209 |
| BspPI | GGATC | 8 cut(s) | 497, 510, 533, 563, 576, 878, 1099, 1121 |
| BspTNI | GGTCTC | 1 cut(s) | 1533 |
| BsrDI | GCAATG | 2 cut(s) | 1352, 1880 |
| BsrFI | RCCGGY | 2 cut(s) | 404, 924 |
| BsrI | ACTGG | 3 cut(s) | 990, 1044, 1737 |
| BssAI | RCCGGY | 2 cut(s) | 404, 924 |
| BssECI | CCNNGG | 5 cut(s) | 497, 498, 1084, 1383, 1635 |
| BssSI | CACGAG | 2 cut(s) | 957, 1403 |
| BssT1I | CCWWGG | 1 cut(s) | 1635 |
| Bst2BI | CACGAG | 2 cut(s) | 957, 1403 |
| Bst2UI | CCWGG | 3 cut(s) | 487, 499, 1085 |
| Bst4CI | ACNGT | 6 cut(s) | 167, 191, 584, 1002, 1304, 1993 |
| Bst6I | CTCTTC | 1 cut(s) | 1142 |
| BstC8I | GCNNGC | 5 cut(s) | 562, 823, 1277, 1597, 1904 |
| BstDEI | CTNAG | 8 cut(s) | 8, 547, 704, 1503, 1530, 1929, 1956, 1962 |
| BstF5I | GGATG | 6 cut(s) | 106, 1136, 1256, 1414, 1741, 1816 |
| BstFNI | CGCG | 1 cut(s) | 1519 |
| BstH2I | RGCGCY | 1 cut(s) | 179 |
| BstHHI | GCGC | 2 cut(s) | 178, 1264 |
| BstMAI | GTCTC | 3 cut(s) | 9, 717, 1533 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 248, 884 |
| BstNI | CCWGG | 3 cut(s) | 487, 499, 1085 |
| BstNSI | RCATGY | 3 cut(s) | 1279, 1297, 1906 |
| BstSCI | CCNGG | 5 cut(s) | 237, 485, 497, 717, 1083 |
| BstSFI | CTRYAG | 3 cut(s) | 750, 1536, 1992 |
| BstSLI | GKGCMC | 2 cut(s) | 1242, 1814 |
| BstUI | CGCG | 1 cut(s) | 1519 |
| BstV2I | GAAGAC | 2 cut(s) | 23, 174 |
| BstX2I | RGATCY | 4 cut(s) | 502, 568, 1123, 1185 |
| BstYI | RGATCY | 4 cut(s) | 502, 568, 1123, 1185 |
| BsuRI | GGCC | 8 cut(s) | 20, 237, 514, 756, 920, 1083, 1382, 1634 |
| BtsCI | GGATG | 6 cut(s) | 106, 1136, 1256, 1414, 1741, 1816 |
| BtsI | GCAGTG | 1 cut(s) | 1424 |
| BtsIMutI | CAGTG | 5 cut(s) | 589, 997, 998, 1424, 1989 |
| BveI | ACCTGC | 1 cut(s) | 209 |
| Cac8I | GCNNGC | 5 cut(s) | 562, 823, 1277, 1597, 1904 |
| CfoI | GCGC | 2 cut(s) | 178, 1264 |
| Cfr10I | RCCGGY | 2 cut(s) | 404, 924 |
| Cfr13I | GGNCC | 3 cut(s) | 376, 489, 512 |
| CseI | GACGC | 1 cut(s) | 657 |
| CsiI | ACCWGGT | 1 cut(s) | 485 |
| Csp6I | GTAC | 3 cut(s) | 935, 1561, 1714 |
| CspAI | ACCGGT | 1 cut(s) | 924 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 424, 459 |
| CviAII | CATG | 7 cut(s) | 557, 599, 786, 1259, 1276, 1294, 1903 |
| CviQI | GTAC | 3 cut(s) | 935, 1561, 1714 |
| DdeI | CTNAG | 8 cut(s) | 8, 547, 704, 1503, 1530, 1929, 1956, 1962 |
| DriI | GACNNNNNGTC | 1 cut(s) | 487 |
| EaeI | YGGCCR | 2 cut(s) | 18, 235 |
| Eam1104I | CTCTTC | 1 cut(s) | 1142 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 487 |
| EarI | CTCTTC | 1 cut(s) | 1142 |
| EciI | GGCGGA | 1 cut(s) | 391 |
| Eco130I | CCWWGG | 1 cut(s) | 1635 |
| Eco147I | AGGCCT | 1 cut(s) | 756 |
| Eco31I | GGTCTC | 1 cut(s) | 1533 |
| Eco32I | GATATC | 1 cut(s) | 1438 |
| Eco47I | GGWCC | 2 cut(s) | 376, 489 |
| Eco57I | CTGAAG | 1 cut(s) | 103 |
| EcoRI | GAATTC | 2 cut(s) | 791, 1676 |
| EcoRII | CCWGG | 3 cut(s) | 485, 497, 1083 |
| EcoRV | GATATC | 1 cut(s) | 1438 |
| EcoT14I | CCWWGG | 1 cut(s) | 1635 |
| EcoT22I | ATGCAT | 1 cut(s) | 1277 |
| ErhI | CCWWGG | 1 cut(s) | 1635 |
| FaeI | CATG | 7 cut(s) | 560, 602, 789, 1262, 1279, 1297, 1906 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1139, 1171, 1645, 1677 |
| FaqI | GGGAC | 1 cut(s) | 1564 |
| FatI | CATG | 7 cut(s) | 556, 598, 785, 1258, 1275, 1293, 1902 |
| FbaI | TGATCA | 2 cut(s) | 136, 1768 |
| FokI | GGATG | 6 cut(s) | 93, 1143, 1263, 1421, 1748, 1803 |
| FspBI | CTAG | 6 cut(s) | 416, 1079, 1127, 1332, 1581, 1980 |
| FspI | TGCGCA | 1 cut(s) | 1263 |
| GlaI | GCGC | 2 cut(s) | 177, 1263 |
| GsaI | CCCAGC | 1 cut(s) | 568 |
| GsuI | CTGGAG | 3 cut(s) | 973, 1554, 1850 |
| HaeII | RGCGCY | 1 cut(s) | 179 |
| HaeIII | GGCC | 8 cut(s) | 20, 237, 514, 756, 920, 1083, 1382, 1634 |
| HapII | CCGG | 6 cut(s) | 238, 374, 405, 719, 925, 1947 |
| HgaI | GACGC | 1 cut(s) | 657 |
| HhaI | GCGC | 2 cut(s) | 178, 1264 |
| Hin1II | CATG | 7 cut(s) | 560, 602, 789, 1262, 1279, 1297, 1906 |
| Hin6I | GCGC | 2 cut(s) | 176, 1262 |
| HinP1I | GCGC | 2 cut(s) | 176, 1262 |
| HindIII | AAGCTT | 1 cut(s) | 1505 |
| HinfI | GANTC | 6 cut(s) | 955, 974, 983, 1152, 1514, 1604 |
| HpaII | CCGG | 6 cut(s) | 238, 374, 405, 719, 925, 1947 |
| HphI | GGTGA | 2 cut(s) | 179, 1499 |
| Hpy166II | GTNNAC | 4 cut(s) | 322, 379, 1240, 1812 |
| Hpy188I | TCNGA | 8 cut(s) | 550, 707, 805, 817, 1168, 1533, 1609, 1625 |
| Hpy188III | TCNNGA | 9 cut(s) | 195, 859, 898, 1034, 1095, 1121, 1332, 1549, 1571 |
| Hpy8I | GTNNAC | 4 cut(s) | 322, 379, 1240, 1812 |
| Hpy99I | CGWCG | 3 cut(s) | 167, 673, 1673 |
| HpyAV | CCTTC | 8 cut(s) | 6, 127, 322, 370, 1068, 1436, 1580, 1647 |
| HpyCH4III | ACNGT | 6 cut(s) | 167, 191, 584, 1002, 1304, 1993 |
| HpyCH4IV | ACGT | 1 cut(s) | 774 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 248, 884 |
| HpyF3I | CTNAG | 8 cut(s) | 8, 547, 704, 1503, 1530, 1929, 1956, 1962 |
| HpySE526I | ACGT | 1 cut(s) | 774 |
| Hsp92II | CATG | 7 cut(s) | 560, 602, 789, 1262, 1279, 1297, 1906 |
| HspAI | GCGC | 2 cut(s) | 176, 1262 |
| Ksp22I | TGATCA | 2 cut(s) | 136, 1768 |
| LmnI | GCTCC | 2 cut(s) | 376, 1573 |
| LweI | GCATC | 6 cut(s) | 160, 808, 897, 1327, 1399, 1726 |
| MabI | ACCWGGT | 1 cut(s) | 485 |
| MaeI | CTAG | 6 cut(s) | 416, 1079, 1127, 1332, 1581, 1980 |
| MaeII | ACGT | 1 cut(s) | 774 |
| MaeIII | GTNAC | 3 cut(s) | 279, 727, 1968 |
| MfeI | CAATTG | 1 cut(s) | 732 |
| MflI | RGATCY | 4 cut(s) | 502, 568, 1123, 1185 |
| MhlI | GDGCHC | 2 cut(s) | 1242, 1814 |
| MlsI | TGGCCA | 1 cut(s) | 20 |
| MluNI | TGGCCA | 1 cut(s) | 20 |
| MlyI | GAGTC | 2 cut(s) | 949, 983 |
| MmeI | TCCRAC | 2 cut(s) | 516, 1780 |
| Mox20I | TGGCCA | 1 cut(s) | 20 |
| Mph1103I | ATGCAT | 1 cut(s) | 1277 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1187 |
| MscI | TGGCCA | 1 cut(s) | 20 |
| MseI | TTAA | 5 cut(s) | 330, 1523, 1793, 1857, 2002 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1407 |
| Msp20I | TGGCCA | 1 cut(s) | 20 |
| MspA1I | CMGCKG | 3 cut(s) | 564, 943, 1742 |
| MspI | CCGG | 6 cut(s) | 238, 374, 405, 719, 925, 1947 |
| MspR9I | CCNGG | 5 cut(s) | 239, 487, 499, 719, 1085 |
| MunI | CAATTG | 1 cut(s) | 732 |
| Mva1269I | GAATGC | 1 cut(s) | 1277 |
| MvaI | CCWGG | 3 cut(s) | 487, 499, 1085 |
| MvnI | CGCG | 1 cut(s) | 1519 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 248, 884 |
| NciI | CCSGG | 2 cut(s) | 239, 719 |
| NlaIII | CATG | 7 cut(s) | 560, 602, 789, 1262, 1279, 1297, 1906 |
| NlaIV | GGNNCC | 5 cut(s) | 199, 504, 513, 570, 1951 |
| NmeAIII | GCCGAG | 1 cut(s) | 1364 |
| NmuCI | GTSAC | 2 cut(s) | 279, 1968 |
| NsbI | TGCGCA | 1 cut(s) | 1263 |
| NsiI | ATGCAT | 1 cut(s) | 1277 |
| NspI | RCATGY | 3 cut(s) | 1279, 1297, 1906 |
| PaeI | GCATGC | 2 cut(s) | 1279, 1906 |
| PasI | CCCWGGG | 1 cut(s) | 498 |
| PceI | AGGCCT | 1 cut(s) | 756 |
| PctI | GAATGC | 1 cut(s) | 1277 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1187 |
| PfeI | GAWTC | 4 cut(s) | 983, 1152, 1514, 1604 |
| Pfl23II | CGTACG | 1 cut(s) | 934 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 466, 498 |
| PfoI | TCCNGGA | 1 cut(s) | 717 |
| PinAI | ACCGGT | 1 cut(s) | 924 |
| PleI | GAGTC | 2 cut(s) | 949, 982 |
| PpsI | GAGTC | 2 cut(s) | 949, 982 |
| PsiI | TTATAA | 2 cut(s) | 779, 1107 |
| Psp6I | CCWGG | 3 cut(s) | 485, 497, 1083 |
| PspFI | CCCAGC | 1 cut(s) | 564 |
| PspGI | CCWGG | 3 cut(s) | 485, 497, 1083 |
| PspLI | CGTACG | 1 cut(s) | 934 |
| PspN4I | GGNNCC | 5 cut(s) | 199, 504, 513, 570, 1951 |
| PspPI | GGNCC | 3 cut(s) | 376, 489, 512 |
| PsuI | RGATCY | 4 cut(s) | 502, 568, 1123, 1185 |
| PvuII | CAGCTG | 2 cut(s) | 564, 1742 |
| RsaI | GTAC | 3 cut(s) | 936, 1562, 1715 |
| RsaNI | GTAC | 3 cut(s) | 935, 1561, 1714 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1407 |
| SaqAI | TTAA | 5 cut(s) | 330, 1523, 1793, 1857, 2002 |
| Sau96I | GGNCC | 3 cut(s) | 376, 489, 512 |
| SchI | GAGTC | 2 cut(s) | 949, 983 |
| ScrFI | CCNGG | 5 cut(s) | 239, 487, 499, 719, 1085 |
| SduI | GDGCHC | 2 cut(s) | 1242, 1814 |
| SexAI | ACCWGGT | 1 cut(s) | 485 |
| SfaNI | GCATC | 6 cut(s) | 160, 808, 897, 1327, 1399, 1726 |
| SfcI | CTRYAG | 3 cut(s) | 750, 1536, 1992 |
| SinI | GGWCC | 2 cut(s) | 376, 489 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1407 |
| SphI | GCATGC | 2 cut(s) | 1279, 1906 |
| SseBI | AGGCCT | 1 cut(s) | 756 |
| SsiI | CCGC | 8 cut(s) | 110, 290, 402, 470, 515, 943, 1216, 1519 |
| SspMI | CTAG | 6 cut(s) | 416, 1079, 1127, 1332, 1581, 1980 |
| StuI | AGGCCT | 1 cut(s) | 756 |
| StyD4I | CCNGG | 5 cut(s) | 237, 485, 497, 717, 1083 |
| StyI | CCWWGG | 1 cut(s) | 1635 |
| TaaI | ACNGT | 6 cut(s) | 167, 191, 584, 1002, 1304, 1993 |
| TaiI | ACGT | 1 cut(s) | 777 |
| TaqI | TCGA | 3 cut(s) | 480, 671, 977 |
| TauI | GCSGC | 2 cut(s) | 517, 1218 |
| TfiI | GAWTC | 4 cut(s) | 983, 1152, 1514, 1604 |
| Tru1I | TTAA | 5 cut(s) | 330, 1523, 1793, 1857, 2002 |
| Tru9I | TTAA | 5 cut(s) | 330, 1523, 1793, 1857, 2002 |
| TscAI | CASTG | 5 cut(s) | 589, 997, 1005, 1424, 1996 |
| TseFI | GTSAC | 2 cut(s) | 279, 1968 |
| Tsp45I | GTSAC | 2 cut(s) | 279, 1968 |
| TspGWI | ACGGA | 3 cut(s) | 218, 619, 1686 |
| TspRI | CASTG | 5 cut(s) | 589, 997, 1005, 1424, 1996 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 466, 498 |
| VneI | GTGCAC | 2 cut(s) | 1238, 1810 |
| VpaK11BI | GGWCC | 2 cut(s) | 376, 489 |
| XapI | RAATTY | 2 cut(s) | 791, 1676 |
| XbaI | TCTAGA | 1 cut(s) | 1331 |
| XceI | RCATGY | 3 cut(s) | 1279, 1297, 1906 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1187 |
| XspI | CTAG | 6 cut(s) | 416, 1079, 1127, 1332, 1581, 1980 |
| Zsp2I | ATGCAT | 1 cut(s) | 1277 |