Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 37 - 107 | 2.2e-12 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 68 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 329 |
| AclWI | GGATC | 4 cut(s) | 74, 267, 313, 335 |
| AcuI | CTGAAG | 1 cut(s) | 230 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 34, 214, 329 |
| AluBI | AGCT | 1 cut(s) | 366 |
| AluI | AGCT | 1 cut(s) | 366 |
| AlwI | GGATC | 4 cut(s) | 74, 267, 313, 335 |
| Ama87I | CYCGRG | 1 cut(s) | 344 |
| AsuC2I | CCSGG | 2 cut(s) | 345, 346 |
| AsuHPI | GGTGA | 2 cut(s) | 29, 121 |
| AvaI | CYCGRG | 1 cut(s) | 344 |
| BccI | CCATC | 2 cut(s) | 212, 323 |
| BcnI | CCSGG | 2 cut(s) | 345, 346 |
| BfaI | CTAG | 2 cut(s) | 59, 367 |
| Bme1390I | CCNGG | 2 cut(s) | 345, 346 |
| BmeT110I | CYCGRG | 1 cut(s) | 344 |
| BmrFI | CCNGG | 2 cut(s) | 345, 346 |
| BpuMI | CCSGG | 2 cut(s) | 345, 346 |
| BsaBI | GATNNNNATC | 1 cut(s) | 258 |
| BsaJI | CCNNGG | 3 cut(s) | 287, 344, 345 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 34, 214, 329 |
| Bse8I | GATNNNNATC | 1 cut(s) | 258 |
| BseDI | CCNNGG | 3 cut(s) | 287, 344, 345 |
| BseGI | GGATG | 4 cut(s) | 52, 82, 204, 270 |
| BseJI | GATNNNNATC | 1 cut(s) | 258 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 34, 214, 329 |
| BseRI | GAGGAG | 1 cut(s) | 20 |
| BsiHKCI | CYCGRG | 1 cut(s) | 344 |
| BsiSI | CCGG | 1 cut(s) | 345 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 34, 214, 329 |
| BsoBI | CYCGRG | 1 cut(s) | 344 |
| Bsp143I | GATC | 4 cut(s) | 79, 259, 318, 340 |
| BspPI | GGATC | 4 cut(s) | 74, 267, 313, 335 |
| BssECI | CCNNGG | 3 cut(s) | 287, 344, 345 |
| BssMI | GATC | 4 cut(s) | 79, 259, 318, 340 |
| Bst4CI | ACNGT | 2 cut(s) | 73, 309 |
| BstDSI | CCRYGG | 1 cut(s) | 287 |
| BstF5I | GGATG | 4 cut(s) | 52, 82, 204, 270 |
| BstKTI | GATC | 4 cut(s) | 82, 262, 321, 343 |
| BstMBI | GATC | 4 cut(s) | 79, 259, 318, 340 |
| BstSCI | CCNGG | 2 cut(s) | 343, 344 |
| BtgI | CCRYGG | 1 cut(s) | 287 |
| BtsCI | GGATG | 4 cut(s) | 52, 82, 204, 270 |
| BtsIMutI | CAGTG | 2 cut(s) | 78, 305 |
| Cfr9I | CCCGGG | 1 cut(s) | 344 |
| CviJI | RGCY | 3 cut(s) | 184, 285, 366 |
| CviKI_1 | RGCY | 3 cut(s) | 184, 285, 366 |
| DpnI | GATC | 4 cut(s) | 81, 261, 320, 342 |
| DpnII | GATC | 4 cut(s) | 79, 259, 318, 340 |
| Eco57I | CTGAAG | 1 cut(s) | 230 |
| Eco88I | CYCGRG | 1 cut(s) | 344 |
| FaiI | YATR | 3 cut(s) | 68, 181, 297 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 182, 214 |
| FokI | GGATG | 4 cut(s) | 59, 89, 191, 277 |
| FspBI | CTAG | 2 cut(s) | 59, 367 |
| HapII | CCGG | 1 cut(s) | 345 |
| HinfI | GANTC | 3 cut(s) | 105, 152, 352 |
| HpaII | CCGG | 1 cut(s) | 345 |
| HphI | GGTGA | 2 cut(s) | 29, 121 |
| Hpy188I | TCNGA | 2 cut(s) | 226, 264 |
| Hpy188III | TCNNGA | 1 cut(s) | 208 |
| Hpy99I | CGWCG | 1 cut(s) | 33 |
| HpyAV | CCTTC | 1 cut(s) | 133 |
| HpyCH4III | ACNGT | 2 cut(s) | 73, 309 |
| HpyCH4V | TGCA | 1 cut(s) | 277 |
| Kzo9I | GATC | 4 cut(s) | 79, 259, 318, 340 |
| LmnI | GCTCC | 1 cut(s) | 226 |
| LpnPI | CCDG | 5 cut(s) | 20, 29, 94, 221, 358 |
| MaeI | CTAG | 2 cut(s) | 59, 367 |
| MaeIII | GTNAC | 1 cut(s) | 17 |
| MalI | GATC | 4 cut(s) | 81, 261, 320, 342 |
| MboI | GATC | 4 cut(s) | 79, 259, 318, 340 |
| MboII | GAAGA | 1 cut(s) | 187 |
| MluCI | AATT | 2 cut(s) | 301, 360 |
| MlyI | GAGTC | 1 cut(s) | 161 |
| MnlI | CCTC | 3 cut(s) | 187, 250, 261 |
| MseI | TTAA | 1 cut(s) | 246 |
| MspI | CCGG | 1 cut(s) | 345 |
| MspR9I | CCNGG | 2 cut(s) | 345, 346 |
| NciI | CCSGG | 2 cut(s) | 345, 346 |
| NdeII | GATC | 4 cut(s) | 79, 259, 318, 340 |
| NmuCI | GTSAC | 1 cut(s) | 17 |
| PfeI | GAWTC | 2 cut(s) | 105, 352 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 329 |
| PleI | GAGTC | 1 cut(s) | 160 |
| PpsI | GAGTC | 1 cut(s) | 160 |
| PsiI | TTATAA | 1 cut(s) | 68 |
| SaqAI | TTAA | 1 cut(s) | 246 |
| Sau3AI | GATC | 4 cut(s) | 79, 259, 318, 340 |
| SchI | GAGTC | 1 cut(s) | 161 |
| ScrFI | CCNGG | 2 cut(s) | 345, 346 |
| SetI | ASST | 5 cut(s) | 12, 60, 144, 283, 368 |
| SmaI | CCCGGG | 1 cut(s) | 346 |
| Sse9I | AATT | 2 cut(s) | 301, 360 |
| SspMI | CTAG | 2 cut(s) | 59, 367 |
| StyD4I | CCNGG | 2 cut(s) | 343, 344 |
| TaaI | ACNGT | 2 cut(s) | 73, 309 |
| TasI | AATT | 2 cut(s) | 301, 360 |
| TfiI | GAWTC | 2 cut(s) | 105, 352 |
| Tru1I | TTAA | 1 cut(s) | 246 |
| Tru9I | TTAA | 1 cut(s) | 246 |
| TscAI | CASTG | 2 cut(s) | 78, 312 |
| TseFI | GTSAC | 1 cut(s) | 17 |
| Tsp45I | GTSAC | 1 cut(s) | 17 |
| TspMI | CCCGGG | 1 cut(s) | 344 |
| TspRI | CASTG | 2 cut(s) | 78, 312 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 329 |
| XmaI | CCCGGG | 1 cut(s) | 344 |
| XspI | CTAG | 2 cut(s) | 59, 367 |